HHsearch alignment for GI: 254780270 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.00 E-value=2.1e-07 Score=74.81 Aligned_cols=217 Identities=27% Similarity=0.393 Sum_probs=141.3
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHC--------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC
Q ss_conf 665201168999999999999842--------444673599860565650279999997708824998618888888835
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRV--------IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~--------~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~ 409 (820)
T Consensus 540 W~diGGlee~kq~lreave-WPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anf--i~v~GPe~ls--- 613 (980)
T TIGR01243 540 WEDIGGLEEVKQELREAVE-WPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF--IAVRGPEILS--- 613 (980)
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCE--EEECCCHHHH---
T ss_conf 0014667899999987752-344405899860788997348746898616888887740145646--7740731223---
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHCCCCH----------HHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 63200145671289999983278873-999933155423117711----------5566554060016813320103523
Q gi|254780270|r 410 GHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDLRGDP----------SAALLEVLDPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 410 gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~~gdp----------~~allevldp~qn~~f~d~y~~~~~ 478 (820)
T Consensus 614 ----kWvGese~~ir~if~~arq~aP~~~f~deidaiaP~-rG~~~~~~~vtd~~~nqll~e~dG-------------~~ 675 (980)
T TIGR01243 614 ----KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA-RGASLDEKGVTDRIVNQLLTELDG-------------LE 675 (980)
T ss_pred ----HHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHC-------------CC
T ss_conf ----440324799999999864128737873021110541-244210010268999999986404-------------43
Q ss_pred CCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 644279999348655-44131-----172479982587868999899986089899862578131322899999997317
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
T Consensus 676 ~~~~vvvi~atnrPdi~dPallrPGr~dr~--i~vP~Pd~~ar~~ifk~ht~-----~~~l-~~dv~l--~~la~~teGy 745 (980)
T TIGR01243 676 ELSDVVVIAATNRPDILDPALLRPGRLDRL--ILVPAPDEEARLEIFKIHTR-----SMPL-AEDVDL--EELAKKTEGY 745 (980)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEE--EEECCCCHHHHHHHHHHHHC-----CCCC-CCCCCH--HHHHHHHCCC
T ss_conf 436658986158874236100488741216--86059855676767655311-----1353-013438--9998651687
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCEE--CCCHHHHHHHHC
Q ss_conf 7410234788879999898765421178-5201--279678675305
Q gi|254780270|r 553 THEAGVRSFERALMKIARKAVTKIVKNS-DTTV--SINENNLQDYLG 596 (820)
Q Consensus 553 t~EaGvR~l~r~i~~i~r~~~~~~~~~~-~~~~--~i~~~~l~~~lg 596 (820)
T Consensus 746 tGa--------di~a~~rea~~~~~r~~~~~~~~~~~~~~~~~~~~~ 784 (980)
T TIGR01243 746 TGA--------DIEAVVREAALAALREVVGKPWDIEVKLRELINYLQ 784 (980)
T ss_pred CCH--------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 632--------299999999999999973450245678999999998