HHsearch alignment for GI: 254780270 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=94.67 E-value=0.26 Score=28.75 Aligned_cols=260 Identities=17% Similarity=0.210 Sum_probs=119.0
Q ss_pred HHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCC------CE----
Q ss_conf 06889-9877665201168999999999999842444673599860565650279999997---7088------24----
Q gi|254780270|r 329 NLDFA-IRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK---ATGR------QY---- 394 (820)
Q Consensus 329 dl~~a-~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~---al~r------~f---- 394 (820)
T Consensus 335 ~~Q~hi~eve~~~~~~l~~~Qk~AL~--------~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd 406 (769)
T TIGR01448 335 DLQKHILEVEKKLRLKLSEEQKEALK--------TAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDD 406 (769)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH--------HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999998687506770688999999--------9860948998577888616899999999987168775531245677
Q ss_pred EEEECCCCCCH-----HHHCCCCCCC----CCCCCHHHHHH-HHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 99861888888-----8835632001----45671289999-98327887399993315542311771155665540600
Q gi|254780270|r 395 VRMSLGGVYDE-----ADIRGHRRTY----IGSMPGRIIQS-LKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPA 464 (820)
Q Consensus 395 ~~islgg~~d~-----~~i~gh~~ty----~ga~pg~ii~~-l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~ 464 (820)
T Consensus 407 ~~v~LaAPTGrAAkRl~E~TG~~a~TIHRLlG~~~~~~~~~k~~~~~~~~DL~IvDE~SM~Dt--------~L~~----- 473 (769)
T TIGR01448 407 LPVVLAAPTGRAAKRLAEVTGLEALTIHRLLGYGSDTKSENKNLEDPIDADLLIVDESSMVDT--------WLAS----- 473 (769)
T ss_pred CEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHH--------HHHH-----
T ss_conf 648873774378885110026212347786368988873211011347877699814621889--------9999-----
Q ss_pred CCCCEEEEEC-CCCCCCCCEEEEEECCCC-CCC--HHHCCCEEE-----EEECC-CCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1681332010-352364427999934865-544--131172479-----98258-7868999899986089899862578
Q gi|254780270|r 465 QNSSFVDHYL-EVEYDLSDVMFIMTANTL-NIP--LPLMDRMEI-----IRIAG-YTEEEKLQIAKNHLVKKVLTEHALK 534 (820)
Q Consensus 465 qn~~f~d~y~-~~~~dls~v~fi~tan~~-~i~--~~l~drme~-----i~~~~-y~~~ek~~i~~~~l~p~~~~~~~~~ 534 (820)
T Consensus 474 -------~lL~a~P~~-a~lllVGD~DQLPSV~pG~VL~DLi~s~~iP~~~LT~vyRQ~~~S~Ii~~A----h~~~~G~~ 541 (769)
T TIGR01448 474 -------SLLAAVPDH-ARLLLVGDADQLPSVGPGQVLKDLIQSKVIPVTRLTKVYRQAEGSSIITLA----HKILQGEA 541 (769)
T ss_pred -------HHHHHCCCC-CEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEECCCCHHHHHH----HHHHCCCC
T ss_conf -------998617977-779888376888988644089999846886612121112411366467888----98731788
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC----C-------CEECCCH----HHHHHHHCCCC
Q ss_conf 1313228999999973177410234788879999898765421178----5-------2012796----78675305200
Q gi|254780270|r 535 QEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNS----D-------TTVSINE----NNLQDYLGVPR 599 (820)
Q Consensus 535 ~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~----~-------~~~~i~~----~~l~~~lg~~~ 599 (820)
T Consensus 542 P--vlnss~~~~Df~~~~~~~s~~e~~~~~i~~~v~~~~~~a~~~Gi~~~dIQVLaPM~kG~~Gi~~LN~~Lq~~LNP~q 619 (769)
T TIGR01448 542 P--VLNSSSAKKDFKFLKLDRSEPEEAAKHIPLMVEKIVGAAKKKGIPGADIQVLAPMYKGELGIKALNQELQDLLNPKQ 619 (769)
T ss_pred C--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 7--52324467667777640010106667899999887789871798600001525898984017888899999708832
Q ss_pred C-CCCCHHC-------C----------------CCCCCCCEEEECCCC
Q ss_conf 0-3320002-------2----------------336500000000016
Q gi|254780270|r 600 Y-KYGKIEG-------E----------------DQVGIVTGLAWTEVG 623 (820)
Q Consensus 600 ~-~~~~~~~-------~----------------~~~G~v~GLa~t~~G 623 (820)
T Consensus 620 kG~~~~~~~~~~~~R~GDrV~Qt~Ndyn~e~FNGD~G~I~~i~~a~~~ 667 (769)
T TIGR01448 620 KGDQEVIELKEVEYRKGDRVMQTKNDYNKEVFNGDLGVIVEIEKAKEG 667 (769)
T ss_pred CCCCCEEEECCEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECHHCC
T ss_conf 378520651555446887246520076555336663044564002203