HHsearch alignment for GI: 254780270 and conserved domain: TIGR01448

>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=94.67  E-value=0.26  Score=28.75  Aligned_cols=260  Identities=17%  Similarity=0.210  Sum_probs=119.0

Q ss_pred             HHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCC------CE----
Q ss_conf             06889-9877665201168999999999999842444673599860565650279999997---7088------24----
Q gi|254780270|r  329 NLDFA-IRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK---ATGR------QY----  394 (820)
Q Consensus       329 dl~~a-~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~---al~r------~f----  394 (820)
T Consensus       335 ~~Q~hi~eve~~~~~~l~~~Qk~AL~--------~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd  406 (769)
T TIGR01448       335 DLQKHILEVEKKLRLKLSEEQKEALK--------TAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDD  406 (769)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH--------HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99999998687506770688999999--------9860948998577888616899999999987168775531245677


Q ss_pred             EEEECCCCCCH-----HHHCCCCCCC----CCCCCHHHHHH-HHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf             99861888888-----8835632001----45671289999-98327887399993315542311771155665540600
Q gi|254780270|r  395 VRMSLGGVYDE-----ADIRGHRRTY----IGSMPGRIIQS-LKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPA  464 (820)
Q Consensus       395 ~~islgg~~d~-----~~i~gh~~ty----~ga~pg~ii~~-l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~  464 (820)
T Consensus       407 ~~v~LaAPTGrAAkRl~E~TG~~a~TIHRLlG~~~~~~~~~k~~~~~~~~DL~IvDE~SM~Dt--------~L~~-----  473 (769)
T TIGR01448       407 LPVVLAAPTGRAAKRLAEVTGLEALTIHRLLGYGSDTKSENKNLEDPIDADLLIVDESSMVDT--------WLAS-----  473 (769)
T ss_pred             CEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHH--------HHHH-----
T ss_conf             648873774378885110026212347786368988873211011347877699814621889--------9999-----


Q ss_pred             CCCCEEEEEC-CCCCCCCCEEEEEECCCC-CCC--HHHCCCEEE-----EEECC-CCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             1681332010-352364427999934865-544--131172479-----98258-7868999899986089899862578
Q gi|254780270|r  465 QNSSFVDHYL-EVEYDLSDVMFIMTANTL-NIP--LPLMDRMEI-----IRIAG-YTEEEKLQIAKNHLVKKVLTEHALK  534 (820)
Q Consensus       465 qn~~f~d~y~-~~~~dls~v~fi~tan~~-~i~--~~l~drme~-----i~~~~-y~~~ek~~i~~~~l~p~~~~~~~~~  534 (820)
T Consensus       474 -------~lL~a~P~~-a~lllVGD~DQLPSV~pG~VL~DLi~s~~iP~~~LT~vyRQ~~~S~Ii~~A----h~~~~G~~  541 (769)
T TIGR01448       474 -------SLLAAVPDH-ARLLLVGDADQLPSVGPGQVLKDLIQSKVIPVTRLTKVYRQAEGSSIITLA----HKILQGEA  541 (769)
T ss_pred             -------HHHHHCCCC-CEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEECCCCHHHHHH----HHHHCCCC
T ss_conf             -------998617977-779888376888988644089999846886612121112411366467888----98731788


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC----C-------CEECCCH----HHHHHHHCCCC
Q ss_conf             1313228999999973177410234788879999898765421178----5-------2012796----78675305200
Q gi|254780270|r  535 QEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNS----D-------TTVSINE----NNLQDYLGVPR  599 (820)
Q Consensus       535 ~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~----~-------~~~~i~~----~~l~~~lg~~~  599 (820)
T Consensus       542 P--vlnss~~~~Df~~~~~~~s~~e~~~~~i~~~v~~~~~~a~~~Gi~~~dIQVLaPM~kG~~Gi~~LN~~Lq~~LNP~q  619 (769)
T TIGR01448       542 P--VLNSSSAKKDFKFLKLDRSEPEEAAKHIPLMVEKIVGAAKKKGIPGADIQVLAPMYKGELGIKALNQELQDLLNPKQ  619 (769)
T ss_pred             C--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             7--52324467667777640010106667899999887789871798600001525898984017888899999708832


Q ss_pred             C-CCCCHHC-------C----------------CCCCCCCEEEECCCC
Q ss_conf             0-3320002-------2----------------336500000000016
Q gi|254780270|r  600 Y-KYGKIEG-------E----------------DQVGIVTGLAWTEVG  623 (820)
Q Consensus       600 ~-~~~~~~~-------~----------------~~~G~v~GLa~t~~G  623 (820)
T Consensus       620 kG~~~~~~~~~~~~R~GDrV~Qt~Ndyn~e~FNGD~G~I~~i~~a~~~  667 (769)
T TIGR01448       620 KGDQEVIELKEVEYRKGDRVMQTKNDYNKEVFNGDLGVIVEIEKAKEG  667 (769)
T ss_pred             CCCCCEEEECCEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECHHCC
T ss_conf             378520651555446887246520076555336663044564002203