HHsearch alignment for GI: 254780270 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.39 E-value=0.0013 Score=46.27 Aligned_cols=131 Identities=28% Similarity=0.453 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-
Q ss_conf 3221068899877665201168999999999999842444673599860565650279999997708824998618888-
Q gi|254780270|r 325 KTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY- 403 (820)
Q Consensus 325 ~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~- 403 (820)
T Consensus 94 v~S~NiRIaRE~~G~A--------~~~~~yL----~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KV 161 (282)
T TIGR02858 94 VASLNIRIAREVLGAA--------DKILPYL----VDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKV 161 (282)
T ss_pred CCCCCEEEEEECCCCC--------HHHHHHH----HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 4642133020005775--------6668877----305894467888868898851048889888607854246899746
Q ss_pred ---CH-HHHCCC----------CCC-CCCCCCHHHHHHHHHC-CCCCE-EEEEECHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf ---88-883563----------200-1456712899999832-78873-9999331554231177115566554060016
Q gi|254780270|r 404 ---DE-ADIRGH----------RRT-YIGSMPGRIIQSLKRA-KRSNP-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQN 466 (820)
Q Consensus 404 ---d~-~~i~gh----------~~t-y~ga~pg~ii~~l~~~-~~~np-v~~ldeidk~~~~~~gdp~~allevldp~qn 466 (820)
T Consensus 162 givDERSEIAgC~~GvPQ~~vG~RtDVLD~CP--KAEGmMM~iRSMSP~Viv~DEIGr~-ED-----~~Al~eA~n---- 229 (282)
T TIGR02858 162 GIVDERSEIAGCVNGVPQLDVGIRTDVLDGCP--KAEGMMMLIRSMSPDVIVVDEIGRE-ED-----VEALLEALN---- 229 (282)
T ss_pred EEEECCHHHHHHCCCCCCCCCCCCEEECCCCC--HHHHHHHHHHCCCCCEEEEECCCCH-HH-----HHHHHHHHC----
T ss_conf 99843246565458824144676067517885--3789999997069857998148895-33-----899999861----
Q ss_pred CCEEEEECCCCCCCCCEEEEEECCCCC
Q ss_conf 813320103523644279999348655
Q gi|254780270|r 467 SSFVDHYLEVEYDLSDVMFIMTANTLN 493 (820)
Q Consensus 467 ~~f~d~y~~~~~dls~v~fi~tan~~~ 493 (820)
T Consensus 230 --------------aGV~~I~TaHg~~ 242 (282)
T TIGR02858 230 --------------AGVSVIATAHGRD 242 (282)
T ss_pred --------------CCCEEEEEECCCC
T ss_conf --------------6756887640488