HHsearch alignment for GI: 254780270 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.65 E-value=1.6e-06 Score=68.15 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=128.9
Q ss_pred HHCHHHHHHHHHHHHHHHHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEECCC
Q ss_conf 201168999999999999842---------444673599860565650279999997708----------8249986188
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRV---------IKNKGLILCFVGPPGVGKTSLAQSIAKATG----------RQYVRMSLGG 401 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~---------~~~~g~il~l~gppgvGKts~~~sia~al~----------r~f~~islgg 401 (820)
T Consensus 8 ~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ER----- 82 (261)
T TIGR02881 8 LVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVER----- 82 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE-----
T ss_conf 048889999999999999998888751011488447877427866843899999999985337567886788762-----
Q ss_pred CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH----HCCCCHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 8888883563200145671289999983278873999933155423----117711556655406001681332010352
Q gi|254780270|r 402 VYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS----DLRGDPSAALLEVLDPAQNSSFVDHYLEVE 477 (820)
Q Consensus 402 ~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~----~~~gdp~~allevldp~qn~~f~d~y~~~~ 477 (820)
T Consensus 83 ----ADLVG---EYIGHTAqkTRe~~kkA~--GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mE-d~~~~l-------- 144 (261)
T TIGR02881 83 ----ADLVG---EYIGHTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKAME-DQRNEL-------- 144 (261)
T ss_pred ----CCCCC---CCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-HCCCCE--------
T ss_conf ----22122---320300489999999863--880055777776148888766208889999876-156986--------
Q ss_pred CCCCCEEEEEECCC-----CCCCHHHCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH---
Q ss_conf 36442799993486-----554413117247-998258786899989998608989986257813132289999999---
Q gi|254780270|r 478 YDLSDVMFIMTANT-----LNIPLPLMDRME-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDI--- 548 (820)
Q Consensus 478 ~dls~v~fi~tan~-----~~i~~~l~drme-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~i--- 548 (820)
T Consensus 145 -----vlILAGY~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~R----------eY~Lt~~A~~~lr~~ 209 (261)
T TIGR02881 145 -----VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER----------EYKLTEEAKWKLREH 209 (261)
T ss_pred -----EEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHH----------HHCCCHHHHHHHHHH
T ss_conf -----89970876899998620779777665054188998889999999998646----------422578899999999
Q ss_pred HHCCC----CCC----HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 73177----410----2347888799998987654211785
Q gi|254780270|r 549 IRLFT----HEA----GVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 549 i~~Yt----~Ea----GvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
T Consensus 210 l~~~~~~~~~~~sNaR~vRN~---iE~AIR~QAvRlL~~~~ 247 (261)
T TIGR02881 210 LAKVDQLSSREFSNARYVRNI---IEKAIRRQAVRLLKKSD 247 (261)
T ss_pred HHHHHHHHHCCCCCCCHHHHH---HHHHHHHHHHHHHCCCC
T ss_conf 741244421005762012428---89999999987643464