HHsearch alignment for GI: 254780270 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.90 E-value=1.5e-19 Score=166.91 Aligned_cols=262 Identities=23% Similarity=0.370 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-CCCCCC--EEEEECCCCCCHHH
Q ss_conf 89999987654041587663221-068899877665201168999999999999842-444673--59986056565027
Q gi|254780270|r 306 SVVRNYLDWLLGVPWDKKSKTKK-NLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV-IKNKGL--ILCFVGPPGVGKTS 381 (820)
Q Consensus 306 ~v~r~Yld~~~~lPW~~~t~~~~-dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~-~~~~g~--il~l~gppgvGKts 381 (820)
T Consensus 531 ~~ia~vvs~~tgIPv~~~~~~e~~~L~~Le~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTE 610 (852)
T TIGR03346 531 EEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 610 (852)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH
T ss_conf 99999999996886676665479999878888998971709999999999999971888899974589986788776899
Q ss_pred HHHHHHHHH---CCCEEEEECCCCCC---HHHHCCCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHH
Q ss_conf 999999770---88249986188888---8883563200145671-2899999832788739999331554231177115
Q gi|254780270|r 382 LAQSIAKAT---GRQYVRMSLGGVYD---EADIRGHRRTYIGSMP-GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPS 454 (820)
Q Consensus 382 ~~~sia~al---~r~f~~islgg~~d---~~~i~gh~~ty~ga~p-g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~ 454 (820)
T Consensus 611 LAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr~--~PysVvL~DEIEKAh~----~V~ 684 (852)
T TIGR03346 611 LAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR--KPYSVVLFDEVEKAHP----DVF 684 (852)
T ss_pred HHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHHH--CCCEEEEECCHHHHCH----HHH
T ss_conf 9999999985585206984304430122477855899976776878742398981--9887998530543076----899
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC------------------------C-C-CCHHHCCCE-EEEEE
Q ss_conf 5665540600168133201035236442799993486------------------------5-5-441311724-79982
Q gi|254780270|r 455 AALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT------------------------L-N-IPLPLMDRM-EIIRI 507 (820)
Q Consensus 455 ~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~------------------------~-~-i~~~l~drm-e~i~~ 507 (820)
T Consensus 685 ~~lLQilD---~G~ltD~~-Gr~vdF~NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F 760 (852)
T TIGR03346 685 NVLLQVLD---DGRLTDGQ-GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVF 760 (852)
T ss_pred HHHHHHHC---CCEEECCC-CCEEEEEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE
T ss_conf 99998823---67430799-988853556898615406599974114555799999999999965899899637868983
Q ss_pred CCCCHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCHHHHHHHH-HCCCCCCHHHHHHHHHHHH-HHHHHHHHHCCC
Q ss_conf 5878689998999860--89899862578131322899999997-3177410234788879999-898765421178
Q gi|254780270|r 508 AGYTEEEKLQIAKNHL--VKKVLTEHALKQEECCISDGVLLDII-RLFTHEAGVRSFERALMKI-ARKAVTKIVKNS 580 (820)
Q Consensus 508 ~~y~~~ek~~i~~~~l--~p~~~~~~~~~~~~~~~~~~~i~~ii-~~Yt~EaGvR~l~r~i~~i-~r~~~~~~~~~~ 580 (820)
T Consensus 761 ~~L~~~~l~~I~~~~l~~l~~~l~~~~i---~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i~~~i~~~la~~iL~g~ 834 (852)
T TIGR03346 761 HPLGREQIARIVEIQLGRLRKRLAERKI---TLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGE 834 (852)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899999999999999999999997798---4998889999999848897747156999999998899999997488