HHsearch alignment for GI: 254780270 and conserved domain: TIGR03420

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.99  E-value=4.4e-08  Score=80.05  Aligned_cols=186  Identities=16%  Similarity=0.256  Sum_probs=119.5

Q ss_pred             HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             998424446735998605656502799999977088---24998618888888835632001456712899999832788
Q gi|254780270|r  357 VQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS  433 (820)
Q Consensus       357 v~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~  433 (820)
T Consensus        29 l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~------~--------~~~~l~~l----~~   90 (226)
T TIGR03420        29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ------A--------DPEVLEGL----EQ   90 (226)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHH------H--------HHHHHHHC----CC
T ss_conf             998764668886999899999889999999999862699579952999877------5--------39999727----44


Q ss_pred             CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCC---EEEE
Q ss_conf             7399993315542311771155665540600168133201035236442799993486----5544-131172---4799
Q gi|254780270|r  434 NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDR---MEII  505 (820)
Q Consensus       434 npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~dr---me~i  505 (820)
T Consensus        91 ~d~l~iDDi~~i~~~~--~~e~~lF~l~N~~~~~-------------~~-~ilits~~~p~~l~~~l~dL~SRl~~~~~~  154 (226)
T TIGR03420        91 ADLVCLDDVEAIAGQP--EWQEALFHLYNRVREA-------------GG-RLLIAGRAAPAQLPLRLPDLRTRLAWGLVF  154 (226)
T ss_pred             CCEEEEECHHHHCCCH--HHHHHHHHHHHHHHHH-------------CC-EEEEECCCCHHHCCCCHHHHHHHHHCCCEE
T ss_conf             8999996633343783--7899999999999865-------------28-289867888232032017799999688568


Q ss_pred             EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf             82587868999899986089899862578131322899999997317741023478887999989876542117852012
Q gi|254780270|r  506 RIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVS  585 (820)
Q Consensus       506 ~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~  585 (820)
T Consensus       155 ~I~~pdd~~~~~iL~k~~-----~~-----r~i~i~~~vi~yl~~r~~R~--~~~l~~~l~~Ld~~sl~~-------kr~  215 (226)
T TIGR03420       155 QLPPLSDEEKIAALQSRA-----AR-----RGLQLPDEVADYLLRHGSRD--MGSLMALLDALDRASLAA-------KRK  215 (226)
T ss_pred             ECCCCCHHHHHHHHHHHH-----HH-----CCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHH-------CCC
T ss_conf             527999999999999999-----98-----59988999999999863798--999999999999999980-------899


Q ss_pred             CCHHHHHHHH
Q ss_conf             7967867530
Q gi|254780270|r  586 INENNLQDYL  595 (820)
Q Consensus       586 i~~~~l~~~l  595 (820)
T Consensus       216 ITi~l~kevL  225 (226)
T TIGR03420       216 ITIPFVKEVL  225 (226)
T ss_pred             CCHHHHHHHH
T ss_conf             9999999984