HHsearch alignment for GI: 254780270 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.99 E-value=4.4e-08 Score=80.05 Aligned_cols=186 Identities=16% Similarity=0.256 Sum_probs=119.5
Q ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 998424446735998605656502799999977088---24998618888888835632001456712899999832788
Q gi|254780270|r 357 VQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS 433 (820)
Q Consensus 357 v~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~ 433 (820)
T Consensus 29 l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~------~--------~~~~l~~l----~~ 90 (226)
T TIGR03420 29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ------A--------DPEVLEGL----EQ 90 (226)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHH------H--------HHHHHHHC----CC
T ss_conf 998764668886999899999889999999999862699579952999877------5--------39999727----44
Q ss_pred CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCC---EEEE
Q ss_conf 7399993315542311771155665540600168133201035236442799993486----5544-131172---4799
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDR---MEII 505 (820)
Q Consensus 434 npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~dr---me~i 505 (820)
T Consensus 91 ~d~l~iDDi~~i~~~~--~~e~~lF~l~N~~~~~-------------~~-~ilits~~~p~~l~~~l~dL~SRl~~~~~~ 154 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP--EWQEALFHLYNRVREA-------------GG-RLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred CCEEEEECHHHHCCCH--HHHHHHHHHHHHHHHH-------------CC-EEEEECCCCHHHCCCCHHHHHHHHHCCCEE
T ss_conf 8999996633343783--7899999999999865-------------28-289867888232032017799999688568
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 82587868999899986089899862578131322899999997317741023478887999989876542117852012
Q gi|254780270|r 506 RIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVS 585 (820)
Q Consensus 506 ~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~ 585 (820)
T Consensus 155 ~I~~pdd~~~~~iL~k~~-----~~-----r~i~i~~~vi~yl~~r~~R~--~~~l~~~l~~Ld~~sl~~-------kr~ 215 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRA-----AR-----RGLQLPDEVADYLLRHGSRD--MGSLMALLDALDRASLAA-------KRK 215 (226)
T ss_pred ECCCCCHHHHHHHHHHHH-----HH-----CCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHH-------CCC
T ss_conf 527999999999999999-----98-----59988999999999863798--999999999999999980-------899
Q ss_pred CCHHHHHHHH
Q ss_conf 7967867530
Q gi|254780270|r 586 INENNLQDYL 595 (820)
Q Consensus 586 i~~~~l~~~l 595 (820)
T Consensus 216 ITi~l~kevL 225 (226)
T TIGR03420 216 ITIPFVKEVL 225 (226)
T ss_pred CCHHHHHHHH
T ss_conf 9999999984