HHsearch alignment for GI: 254780270 and conserved domain: TIGR03499

Probab=97.77  E-value=0.00015  Score=53.35  Aligned_cols=93  Identities=23%  Similarity=0.405  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf             04678999852224788578888899999998753110257899999876540415876632210688998776652011
Q gi|254780270|r  265 RDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGL  344 (820)
Q Consensus       265 ~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl  344 (820)
T Consensus       133 ~~~~~~l~~~L~~~gv~~~~~~~l~~~~~---~~~----~~~~~~~~---------------------------------  172 (282)
T TIGR03499       133 DPEGAKLYERLEEAGVSEELARELLEKLP---ERA----DAESAWRW---------------------------------  172 (282)
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HCC----CHHHHHHH---------------------------------
T ss_conf             86899999999986999999999999746---029----97899999---------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHC--CCCCCCEEEEECCCCCCHHHHHHHHH-H-HH--C-CCEEEEEC
Q ss_conf             68999999999999842--44467359986056565027999999-7-70--8-82499861
Q gi|254780270|r  345 EKVKERIIEYLAVQMRV--IKNKGLILCFVGPPGVGKTSLAQSIA-K-AT--G-RQYVRMSL  399 (820)
Q Consensus       345 ~~vK~rile~lav~~~~--~~~~g~il~l~gppgvGKts~~~sia-~-al--~-r~f~~isl  399 (820)
T Consensus       173 --l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~  232 (282)
T TIGR03499       173 --LREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITT  232 (282)
T ss_pred             --HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             --999999647778876554456727999778887578899999999999738996799980