HHsearch alignment for GI: 254780270 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.49 E-value=0.016 Score=38.00 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHH
Q ss_conf 59986056565027999999770---8824998618888888
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEA 406 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~ 406 (820)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~ 42 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 989998999989999999999987639979999866644899