HHsearch alignment for GI: 254780270 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.97  E-value=0.033  Score=35.53  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=20.8

Q ss_pred             EEECCCCCCHHHHHHHHH-HHH--CCCEEEEEC
Q ss_conf             986056565027999999-770--882499861
Q gi|254780270|r  370 CFVGPPGVGKTSLAQSIA-KAT--GRQYVRMSL  399 (820)
Q Consensus       370 ~l~gppgvGKts~~~sia-~al--~r~f~~isl  399 (820)
T Consensus         3 Li~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~   35 (187)
T cd01124           3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL   35 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             587689999999999999999876997899995