HHsearch alignment for GI: 254780270 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.97 E-value=0.033 Score=35.53 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=20.8
Q ss_pred EEECCCCCCHHHHHHHHH-HHH--CCCEEEEEC
Q ss_conf 986056565027999999-770--882499861
Q gi|254780270|r 370 CFVGPPGVGKTSLAQSIA-KAT--GRQYVRMSL 399 (820)
Q Consensus 370 ~l~gppgvGKts~~~sia-~al--~r~f~~isl 399 (820)
T Consensus 3 Li~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~ 35 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 587689999999999999999876997899995