HHsearch alignment for GI: 254780270 and conserved domain: cd01129

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.29  E-value=0.23  Score=29.10  Aligned_cols=98  Identities=24%  Similarity=0.394  Sum_probs=59.8

Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH--HCCCCCCC
Q ss_conf             6652011689999999999998424446735998605656502799999977088249986188888888--35632001
Q gi|254780270|r  338 DQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD--IRGHRRTY  415 (820)
Q Consensus       338 d~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~--i~gh~~ty  415 (820)
T Consensus        58 ~L~~LG~~~~~~~~l~-----~~~~~~~G-lilitGptGSGKtTtl~a~l~~~~~~~~~--i~tiEdPvE~~~~~~~Q~~  129 (264)
T cd01129          58 DLEKLGLKPENLEIFR-----KLLEKPHG-IILVTGPTGSGKTTTLYSALSELNTPEKN--IITVEDPVEYQIPGINQVQ  129 (264)
T ss_pred             CHHHHCCCHHHHHHHH-----HHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCCCCCEEE
T ss_conf             9879579999999999-----99708998-89997899997799999999864368850--8998676314568873576


Q ss_pred             CCCCCH-HHHHHHHHCCCCCE-EEEEECHH
Q ss_conf             456712-89999983278873-99993315
Q gi|254780270|r  416 IGSMPG-RIIQSLKRAKRSNP-LLLLDEID  443 (820)
Q Consensus       416 ~ga~pg-~ii~~l~~~~~~np-v~~ldeid  443 (820)
T Consensus       130 v~~~~g~~~~~~lr~~LR~dPDvi~igEiR  159 (264)
T cd01129         130 VNEKAGLTFARGLRAILRQDPDIIMVGEIR  159 (264)
T ss_pred             ECCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf             166668789999999855699988746889