HHsearch alignment for GI: 254780270 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.29 E-value=0.23 Score=29.10 Aligned_cols=98 Identities=24% Similarity=0.394 Sum_probs=59.8
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH--HCCCCCCC
Q ss_conf 6652011689999999999998424446735998605656502799999977088249986188888888--35632001
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD--IRGHRRTY 415 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~--i~gh~~ty 415 (820)
T Consensus 58 ~L~~LG~~~~~~~~l~-----~~~~~~~G-lilitGptGSGKtTtl~a~l~~~~~~~~~--i~tiEdPvE~~~~~~~Q~~ 129 (264)
T cd01129 58 DLEKLGLKPENLEIFR-----KLLEKPHG-IILVTGPTGSGKTTTLYSALSELNTPEKN--IITVEDPVEYQIPGINQVQ 129 (264)
T ss_pred CHHHHCCCHHHHHHHH-----HHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCCCCCEEE
T ss_conf 9879579999999999-----99708998-89997899997799999999864368850--8998676314568873576
Q ss_pred CCCCCH-HHHHHHHHCCCCCE-EEEEECHH
Q ss_conf 456712-89999983278873-99993315
Q gi|254780270|r 416 IGSMPG-RIIQSLKRAKRSNP-LLLLDEID 443 (820)
Q Consensus 416 ~ga~pg-~ii~~l~~~~~~np-v~~ldeid 443 (820)
T Consensus 130 v~~~~g~~~~~~lr~~LR~dPDvi~igEiR 159 (264)
T cd01129 130 VNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ECCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 166668789999999855699988746889