HHsearch alignment for GI: 254780270 and conserved domain: cd01856
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.30 E-value=0.03 Score=35.90 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHCHHHHHHHHHHHHHHHHHC----CCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 201168999999999999842----44467359986056565027999999
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRV----IKNKGLILCFVGPPGVGKTSLAQSIA 387 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~----~~~~g~il~l~gppgvGKts~~~sia 387 (820)
T Consensus 86 ~~g~~~l~~~i~~~~~~~~~~~~~~~~~~~~~v~ivG~PNVGKSSlIN~L~ 136 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLR 136 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 657899999999973544445551567777179997379876179999974