HHsearch alignment for GI: 254780270 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.56 E-value=0.01 Score=39.45 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=63.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHH--HHCCCC-CEEEEEE
Q ss_conf 4673599860565650279999997708824998618888888835632001456712899999--832788-7399993
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSL--KRAKRS-NPLLLLD 440 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l--~~~~~~-npv~~ld 440 (820)
T Consensus 24 ~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~--------~~i~y~~QLSgGqkqr~~la~al~~~p~iliLD 95 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCC--------CEEEEEHHCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 799999999899984999999984898898509999996--------089987007999999999999972599899995
Q ss_pred CHHHHHHHCCCCHHH--HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEE
Q ss_conf 315542311771155--665540600168133201035236442799993486554413117247998
Q gi|254780270|r 441 EIDKMGSDLRGDPSA--ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIR 506 (820)
Q Consensus 441 eidk~~~~~~gdp~~--allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~ 506 (820)
T Consensus 96 EP-----t~~LD~~~~~~i~~~l~----------------~~~~tii~vs-Hd~~~~~~~~drii~l~ 141 (144)
T cd03221 96 EP-----TNHLDLESIEALEEALK----------------EYPGTVILVS-HDRYFLDQVATKIIELE 141 (144)
T ss_pred CC-----CCCCCHHHHHHHHHHHH----------------HCCCEEEEEE-CCHHHHHHHCCEEEEEE
T ss_conf 77-----55589999999999999----------------7099999996-79899998799999992