HHsearch alignment for GI: 254780270 and conserved domain: cd03222

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.92  E-value=0.026  Score=36.32  Aligned_cols=69  Identities=26%  Similarity=0.364  Sum_probs=42.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCC---CCCHHHHH--HHHHCCCCCE-EE
Q ss_conf             467359986056565027999999770882499861888888883563200145---67128999--9983278873-99
Q gi|254780270|r  364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG---SMPGRIIQ--SLKRAKRSNP-LL  437 (820)
Q Consensus       364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~g---a~pg~ii~--~l~~~~~~np-v~  437 (820)
T Consensus        23 ~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g---------~~~~~~pq~~~LSGGqrQRv~iAral~~~p~ll   93 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG---------ITPVYKPQYIDLSGGELQRVAIAAALLRNATFY   93 (177)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECC---------CCEECCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             89989999899999999999999688678899466668---------612215551507989999999999982399999


Q ss_pred             EEEC
Q ss_conf             9933
Q gi|254780270|r  438 LLDE  441 (820)
Q Consensus       438 ~lde  441 (820)
T Consensus        94 lLDE   97 (177)
T cd03222          94 LFDE   97 (177)
T ss_pred             EECC
T ss_conf             9748