HHsearch alignment for GI: 254780270 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.91 E-value=0.036 Score=35.25 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
T Consensus 24 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~G 61 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61 (222)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999998599999999779889960999999