>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=94.67  E-value=0.045  Score=34.50  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=30.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             467359986056565027999999770882499861888
Q gi|254780270|r  364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV  402 (820)
Q Consensus       364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~  402 (820)
T Consensus        24 ~~Ge~~~ivGpSG~GKSTllr~i~Gl~~p~~G~I~~~g~   62 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE   62 (178)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf             899899999999983999999998599999639999999