HHsearch alignment for GI: 254780270 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.23 E-value=0.057 Score=33.76 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 467359986056565027999999770882
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
T Consensus 23 ~~GEiv~liGpNGaGKSTLlk~l~Gll~p~ 52 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPD 52 (246)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 579899999799976999999997787888