HHsearch alignment for GI: 254780270 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.97  E-value=0.044  Score=34.61  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             467359986056565027999999
Q gi|254780270|r  364 NKGLILCFVGPPGVGKTSLAQSIA  387 (820)
Q Consensus       364 ~~g~il~l~gppgvGKts~~~sia  387 (820)
T Consensus        19 ~~Ge~~~iiG~nGsGKSTLl~~~~   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             899899999999998999999888