HHsearch alignment for GI: 254780270 and conserved domain: cd03245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.79 E-value=0.019 Score=37.28 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
T Consensus 28 ~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 66 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGT 66 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 799999999999985999999996725478658999999