Query gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 820
No_of_seqs 267 out of 2355
Neff 5.8
Searched_HMMs 39220
Date Tue May 24 11:15:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780270.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00763 lon ATP-dependent pr 100.0 0 0 2345.2 61.2 759 29-787 1-941 (941)
2 PRK10787 DNA-binding ATP-depen 100.0 0 0 2210.9 83.7 777 22-798 5-782 (784)
3 COG0466 Lon ATP-dependent Lon 100.0 0 0 2183.2 76.4 769 27-795 9-781 (782)
4 KOG2004 consensus 100.0 0 0 1865.7 64.3 773 20-792 61-902 (906)
5 pfam05362 Lon_C Lon protease ( 100.0 0 0 554.3 21.6 204 585-788 1-204 (205)
6 TIGR02903 spore_lon_C ATP-depe 100.0 0 0 496.9 28.8 466 215-787 76-616 (616)
7 TIGR02902 spore_lonB ATP-depen 100.0 0 0 443.2 27.3 417 286-787 34-532 (532)
8 PRK13765 ATP-dependent proteas 100.0 0 0 382.3 31.1 352 411-793 214-608 (637)
9 COG1067 LonB Predicted ATP-dep 100.0 1.5E-38 3.9E-43 310.7 28.7 345 433-791 225-623 (647)
10 pfam02190 LON ATP-dependent pr 100.0 6.2E-30 1.6E-34 245.5 22.7 190 27-219 1-193 (193)
11 COG2802 Uncharacterized protei 99.9 1.9E-25 5E-30 211.4 20.0 198 23-223 7-210 (221)
12 TIGR00764 lon_rel ATP-dependen 99.9 1.9E-24 4.7E-29 204.0 14.6 383 388-792 204-652 (662)
13 TIGR03346 chaperone_ClpB ATP-d 99.9 1.5E-19 3.8E-24 166.9 29.0 262 306-580 531-834 (852)
14 TIGR03345 VI_ClpV1 type VI sec 99.9 7E-19 1.8E-23 161.8 28.0 434 121-578 332-837 (852)
15 PRK10865 protein disaggregatio 99.9 9.9E-19 2.5E-23 160.7 28.4 259 309-580 537-837 (857)
16 PRK11034 clpA ATP-dependent Cl 99.8 2.9E-17 7.3E-22 149.6 23.7 301 267-580 380-724 (758)
17 CHL00095 clpC Clp protease ATP 99.8 1.5E-16 3.9E-21 144.1 26.6 260 308-580 477-792 (823)
18 COG0542 clpA ATP-binding subun 99.8 1.6E-15 4.2E-20 136.3 25.7 263 312-589 463-775 (786)
19 PRK11823 DNA repair protein Ra 99.7 8.1E-17 2.1E-21 146.2 12.6 343 362-788 86-453 (454)
20 CHL00195 ycf46 Ycf46; Provisio 99.7 1.8E-14 4.7E-19 128.3 23.4 214 340-596 229-461 (491)
21 PRK03992 proteasome-activating 99.7 1.3E-15 3.2E-20 137.1 17.2 224 339-599 132-374 (390)
22 COG1750 Archaeal serine protea 99.7 5.7E-16 1.5E-20 139.8 11.7 166 623-795 48-216 (579)
23 TIGR02639 ClpA ATP-dependent C 99.7 6.4E-15 1.6E-19 131.8 16.5 294 270-579 407-762 (774)
24 pfam00004 AAA ATPase family as 99.7 2.8E-16 7.2E-21 142.1 8.9 119 369-508 1-130 (131)
25 PRK13342 recombination factor 99.7 4.7E-15 1.2E-19 132.8 15.0 193 363-604 34-230 (417)
26 pfam07724 AAA_2 AAA domain (Cd 99.7 6.9E-16 1.8E-20 139.1 10.1 115 368-492 5-126 (168)
27 PRK04195 replication factor C 99.6 4.1E-14 1E-18 125.7 17.2 189 318-561 2-200 (403)
28 TIGR02653 Lon_rel_chp conserve 99.6 3.5E-15 9E-20 133.7 11.5 180 607-787 493-674 (677)
29 PRK05201 hslU ATP-dependent pr 99.6 1.5E-13 3.9E-18 121.4 19.2 262 329-599 5-432 (442)
30 PRK05342 clpX ATP-dependent pr 99.6 3.7E-13 9.4E-18 118.5 20.4 254 330-594 63-401 (411)
31 PRK13341 recombination factor 99.6 1.3E-13 3.3E-18 121.9 16.0 190 367-602 53-251 (726)
32 CHL00176 ftsH cell division pr 99.6 4.6E-13 1.2E-17 117.7 18.1 218 335-594 173-413 (631)
33 COG0464 SpoVK ATPases of the A 99.6 1.3E-13 3.3E-18 121.9 15.3 221 340-597 243-482 (494)
34 pfam05496 RuvB_N Holliday junc 99.6 4.4E-13 1.1E-17 117.9 17.1 198 339-573 24-230 (234)
35 COG0714 MoxR-like ATPases [Gen 99.6 8E-14 2E-18 123.5 13.1 173 329-523 14-203 (329)
36 PRK00440 rfc replication facto 99.6 9.8E-13 2.5E-17 115.2 17.5 215 315-599 1-226 (318)
37 CHL00181 cbbX CbbX; Provisiona 99.5 3.7E-12 9.3E-17 110.9 19.1 227 327-591 11-271 (287)
38 pfam07728 AAA_5 AAA domain (dy 99.5 2.7E-14 7E-19 127.0 6.8 126 369-502 2-139 (139)
39 PRK00080 ruvB Holliday junctio 99.5 2.3E-12 6E-17 112.4 15.5 178 339-551 25-211 (328)
40 TIGR00382 clpX ATP-dependent C 99.5 3.1E-13 7.9E-18 119.1 10.7 274 288-595 65-447 (452)
41 PRK10733 hflB ATP-dependent me 99.5 5E-12 1.3E-16 109.9 16.7 217 337-594 150-388 (644)
42 KOG0731 consensus 99.5 9.7E-12 2.5E-16 107.7 16.6 167 336-528 308-500 (774)
43 PRK00411 cdc6 cell division co 99.5 8.7E-11 2.2E-15 100.5 20.7 222 344-595 35-279 (394)
44 COG1066 Sms Predicted ATP-depe 99.5 7.3E-12 1.9E-16 108.6 15.2 184 582-787 266-454 (456)
45 PRK12402 replication factor C 99.5 1.5E-12 3.9E-17 113.8 11.5 191 316-551 1-215 (337)
46 COG2256 MGS1 ATPase related to 99.4 7.3E-12 1.8E-16 108.7 14.4 184 368-600 50-240 (436)
47 COG1223 Predicted ATPase (AAA+ 99.4 1.1E-11 2.8E-16 107.4 14.7 250 304-599 92-356 (368)
48 cd00009 AAA The AAA+ (ATPases 99.4 1.2E-12 2.9E-17 114.7 9.6 132 358-507 11-149 (151)
49 PRK05563 DNA polymerase III su 99.4 1.1E-11 2.7E-16 107.4 13.8 213 339-598 16-244 (541)
50 COG2255 RuvB Holliday junction 99.4 4.3E-11 1.1E-15 102.8 16.4 179 338-551 25-212 (332)
51 PRK07270 DNA polymerase III su 99.4 1.6E-11 4E-16 106.1 13.0 189 339-568 15-223 (557)
52 pfam07726 AAA_3 ATPase family 99.4 1E-12 2.6E-17 115.1 6.7 117 369-502 2-129 (131)
53 KOG0738 consensus 99.4 1.9E-11 4.9E-16 105.5 13.2 228 339-596 212-467 (491)
54 PRK06647 DNA polymerase III su 99.4 1.9E-11 4.8E-16 105.6 12.6 213 339-598 16-244 (560)
55 PRK06305 DNA polymerase III su 99.4 1.9E-11 4.8E-16 105.5 12.0 211 340-598 18-246 (462)
56 PRK06674 DNA polymerase III su 99.4 2E-10 5.2E-15 97.7 17.3 209 339-598 16-244 (563)
57 PRK05896 DNA polymerase III su 99.3 1.8E-10 4.7E-15 98.1 16.7 212 339-597 16-243 (613)
58 KOG0730 consensus 99.3 2.2E-10 5.7E-15 97.4 15.7 221 337-596 432-672 (693)
59 KOG0736 consensus 99.3 1.8E-10 4.5E-15 98.2 14.5 147 365-527 430-580 (953)
60 PRK08451 DNA polymerase III su 99.3 6E-11 1.5E-15 101.7 11.4 208 339-597 14-241 (523)
61 PRK09862 putative ATP-dependen 99.3 8.1E-10 2.1E-14 93.2 17.1 225 340-600 192-494 (506)
62 PRK06645 DNA polymerase III su 99.3 9.1E-11 2.3E-15 100.3 12.0 215 340-598 22-256 (507)
63 PRK13407 bchI magnesium chelat 99.3 7.1E-10 1.8E-14 93.6 16.5 227 340-595 9-303 (334)
64 PRK07133 DNA polymerase III su 99.3 3.1E-10 7.9E-15 96.3 14.6 190 339-570 18-225 (718)
65 KOG0733 consensus 99.3 1.2E-10 3.1E-15 99.4 12.3 193 339-565 190-416 (802)
66 COG1220 HslU ATP-dependent pro 99.3 2.6E-09 6.5E-14 89.4 18.5 169 424-598 241-433 (444)
67 COG1219 ClpX ATP-dependent pro 99.3 1.5E-10 3.8E-15 98.8 11.9 259 330-599 52-395 (408)
68 KOG0745 consensus 99.2 6.4E-10 1.6E-14 93.9 14.9 216 369-592 229-528 (564)
69 COG1222 RPT1 ATP-dependent 26S 99.2 1.9E-10 4.8E-15 98.0 11.9 219 338-595 150-389 (406)
70 KOG1051 consensus 99.2 4.2E-09 1.1E-13 87.7 18.6 164 317-492 539-711 (898)
71 COG4930 Predicted ATP-dependen 99.2 1.4E-10 3.6E-15 99.0 10.7 196 586-784 475-678 (683)
72 CHL00081 chlI Mg-protoporyphyr 99.2 4E-09 1E-13 87.9 17.5 229 341-595 14-314 (347)
73 TIGR00635 ruvB Holliday juncti 99.2 1.9E-10 4.9E-15 97.9 10.0 178 340-552 5-191 (305)
74 TIGR01241 FtsH_fam ATP-depende 99.2 2.3E-11 5.9E-16 104.8 4.1 285 339-673 59-422 (505)
75 KOG0733 consensus 99.1 1.8E-09 4.5E-14 90.6 13.1 222 339-598 511-769 (802)
76 KOG4159 consensus 99.1 4.7E-10 1.2E-14 95.0 8.9 191 23-221 172-370 (398)
77 KOG0734 consensus 99.1 1.8E-08 4.7E-13 82.9 17.0 280 326-654 291-606 (752)
78 COG0470 HolB ATPase involved i 99.1 4.1E-09 1.1E-13 87.8 13.1 154 340-519 2-177 (325)
79 PRK11361 acetoacetate metaboli 99.1 2.1E-08 5.3E-13 82.5 16.2 205 363-596 164-391 (457)
80 PRK05022 anaerobic nitric oxid 99.1 1.2E-08 3E-13 84.4 14.6 208 363-591 207-435 (510)
81 KOG0989 consensus 99.1 3.7E-09 9.4E-14 88.2 11.6 166 364-569 55-235 (346)
82 TIGR00416 sms DNA repair prote 99.1 4.6E-10 1.2E-14 95.0 6.9 343 364-783 101-481 (481)
83 PRK10820 DNA-binding transcrip 99.1 2.3E-08 5.7E-13 82.2 15.2 184 362-568 224-426 (513)
84 KOG0651 consensus 99.0 1.7E-09 4.4E-14 90.7 9.4 185 348-560 138-353 (388)
85 COG1474 CDC6 Cdc6-related prot 99.0 5.7E-08 1.5E-12 79.2 17.0 204 360-594 37-261 (366)
86 pfam00493 MCM MCM2/3/5 family. 99.0 6.4E-09 1.6E-13 86.4 12.0 201 335-553 20-271 (327)
87 KOG2028 consensus 99.0 2.1E-08 5.3E-13 82.5 14.5 207 358-605 154-375 (554)
88 PRK07764 DNA polymerase III su 99.0 9E-09 2.3E-13 85.2 12.3 188 340-569 16-226 (775)
89 COG3480 SdrC Predicted secrete 99.0 8.1E-10 2.1E-14 93.2 6.7 97 687-785 230-337 (342)
90 TIGR01243 CDC48 AAA family ATP 99.0 2.1E-07 5.5E-12 74.8 18.5 217 338-596 540-784 (980)
91 PRK11608 pspF phage shock prot 99.0 3.6E-08 9.1E-13 80.7 14.3 190 362-569 26-237 (325)
92 PRK10923 glnG nitrogen regulat 99.0 2E-08 5E-13 82.7 12.9 202 363-594 159-384 (469)
93 TIGR03420 DnaA_homol_Hda DnaA 99.0 4.4E-08 1.1E-12 80.0 14.6 186 357-595 29-225 (226)
94 TIGR01242 26Sp45 26S proteasom 99.0 8.3E-09 2.1E-13 85.5 10.8 175 334-529 117-312 (364)
95 PRK05564 DNA polymerase III su 99.0 2.3E-08 6E-13 82.1 12.7 143 339-517 4-159 (313)
96 PRK10365 transcriptional regul 99.0 1.5E-08 3.7E-13 83.7 11.6 202 363-593 160-384 (441)
97 TIGR02397 dnaX_nterm DNA polym 99.0 2.6E-08 6.7E-13 81.7 12.6 193 361-598 31-244 (363)
98 KOG0743 consensus 99.0 1.7E-07 4.2E-12 75.7 16.5 176 368-572 237-435 (457)
99 KOG0737 consensus 99.0 6.4E-08 1.6E-12 78.8 14.4 203 340-577 93-312 (386)
100 PRK08853 DNA polymerase III su 98.9 2.2E-08 5.7E-13 82.2 11.7 173 358-562 30-218 (717)
101 pfam06068 TIP49 TIP49 C-termin 98.9 4.8E-08 1.2E-12 79.7 13.4 190 359-559 43-383 (395)
102 PRK11388 DNA-binding transcrip 98.9 6.2E-08 1.6E-12 78.9 13.6 203 363-595 346-568 (639)
103 COG0465 HflB ATP-dependent Zn 98.9 4.9E-08 1.2E-12 79.7 12.7 182 325-522 129-332 (596)
104 PRK11331 5-methylcytosine-spec 98.9 5.6E-08 1.4E-12 79.2 12.8 137 364-510 193-358 (459)
105 PRK09112 DNA polymerase III su 98.9 1.8E-08 4.6E-13 83.0 9.6 186 338-564 22-241 (352)
106 PRK08691 DNA polymerase III su 98.9 3E-08 7.5E-13 81.3 10.6 184 341-561 18-217 (704)
107 KOG0740 consensus 98.9 3.3E-08 8.3E-13 81.0 10.7 203 339-575 153-370 (428)
108 PTZ00112 origin recognition co 98.9 1.6E-07 4.1E-12 75.8 14.1 212 342-592 270-507 (650)
109 PRK09111 DNA polymerase III su 98.9 6.8E-08 1.7E-12 78.6 11.9 198 359-598 38-256 (600)
110 PRK06893 DNA replication initi 98.9 5.1E-07 1.3E-11 72.0 16.1 187 358-596 31-228 (229)
111 PRK07003 DNA polymerase III su 98.8 5.8E-08 1.5E-12 79.1 11.0 171 358-560 30-216 (816)
112 PRK07994 DNA polymerase III su 98.8 7E-08 1.8E-12 78.5 11.0 171 363-565 35-221 (643)
113 PRK05648 DNA polymerase III su 98.8 2.2E-07 5.7E-12 74.7 12.4 197 359-597 31-243 (705)
114 COG2812 DnaX DNA polymerase II 98.8 1.3E-07 3.3E-12 76.5 11.2 211 342-599 19-245 (515)
115 KOG0744 consensus 98.8 4.2E-08 1.1E-12 80.2 8.6 164 341-521 145-338 (423)
116 KOG0728 consensus 98.8 7.6E-08 1.9E-12 78.2 9.9 139 364-523 179-331 (404)
117 KOG0730 consensus 98.8 9.7E-07 2.5E-11 69.9 15.5 171 365-578 217-403 (693)
118 PRK08903 hypothetical protein; 98.8 6.6E-07 1.7E-11 71.1 14.3 178 363-598 39-226 (227)
119 smart00464 LON Found in ATP-de 98.8 1.7E-08 4.2E-13 83.2 5.9 91 27-216 1-92 (92)
120 PRK06872 DNA polymerase III su 98.7 3.3E-07 8.3E-12 73.4 12.2 167 358-560 30-216 (696)
121 PRK05642 DNA replication initi 98.7 1E-06 2.6E-11 69.7 14.4 179 365-596 44-233 (234)
122 KOG0727 consensus 98.7 3.5E-07 8.8E-12 73.2 11.9 216 339-593 155-391 (408)
123 PRK07471 DNA polymerase III su 98.7 1.5E-07 3.8E-12 76.0 10.0 154 339-517 17-205 (363)
124 KOG0739 consensus 98.7 1.6E-07 4E-12 75.8 10.1 154 340-508 134-297 (439)
125 smart00350 MCM minichromosome 98.7 4.4E-07 1.1E-11 72.4 12.3 170 336-523 200-400 (509)
126 TIGR02928 TIGR02928 orc1/cdc6 98.7 1.8E-06 4.7E-11 67.7 15.5 212 363-595 40-285 (383)
127 KOG0478 consensus 98.7 2.2E-07 5.7E-12 74.7 10.5 244 337-595 427-721 (804)
128 TIGR01243 CDC48 AAA family ATP 98.7 1.7E-07 4.3E-12 75.6 9.8 160 340-521 207-388 (980)
129 KOG0735 consensus 98.7 3.7E-07 9.5E-12 73.0 11.5 227 361-625 426-672 (952)
130 PRK12323 DNA polymerase III su 98.7 6.6E-07 1.7E-11 71.1 12.6 167 359-561 31-222 (721)
131 KOG0736 consensus 98.7 5.6E-07 1.4E-11 71.7 11.7 222 339-595 672-929 (953)
132 COG1239 ChlI Mg-chelatase subu 98.7 5.2E-07 1.3E-11 71.9 11.3 227 341-595 19-319 (423)
133 PRK08084 DNA replication initi 98.7 3E-06 7.6E-11 66.2 15.1 186 356-595 35-233 (235)
134 smart00763 AAA_PrkA PrkA AAA d 98.7 1.6E-06 4.2E-11 68.1 13.8 55 337-391 49-103 (361)
135 PHA02244 ATPase-like protein 98.7 2.9E-07 7.3E-12 73.9 9.8 178 369-571 122-322 (383)
136 COG1224 TIP49 DNA helicase TIP 98.7 5.3E-07 1.3E-11 71.9 11.1 189 360-559 59-399 (450)
137 TIGR00368 TIGR00368 Mg chelata 98.7 3E-07 7.6E-12 73.7 9.7 153 621-785 6-162 (505)
138 TIGR02881 spore_V_K stage V sp 98.7 1.6E-06 4.2E-11 68.2 13.4 200 341-581 8-247 (261)
139 KOG2170 consensus 98.6 7.7E-08 2E-12 78.2 6.6 159 325-502 68-237 (344)
140 PRK07399 DNA polymerase III su 98.6 1.8E-06 4.6E-11 67.8 12.9 161 339-524 4-196 (314)
141 COG2204 AtoC Response regulato 98.6 3.3E-06 8.4E-11 65.8 14.2 184 363-566 162-368 (464)
142 PRK07132 DNA polymerase III su 98.6 8.2E-07 2.1E-11 70.4 10.8 145 349-516 4-157 (303)
143 PRK08770 DNA polymerase III su 98.6 8E-07 2E-11 70.5 10.6 197 360-598 32-244 (663)
144 COG1241 MCM2 Predicted ATPase 98.6 2.2E-07 5.5E-12 74.8 7.5 197 337-553 284-539 (682)
145 pfam00158 Sigma54_activat Sigm 98.6 3.3E-07 8.5E-12 73.4 8.2 130 363-507 20-167 (168)
146 smart00382 AAA ATPases associa 98.6 2.2E-07 5.7E-12 74.7 7.3 127 365-502 1-138 (148)
147 PRK08058 DNA polymerase III su 98.6 2.9E-07 7.5E-12 73.8 7.8 133 359-516 21-175 (329)
148 KOG0652 consensus 98.6 6.6E-07 1.7E-11 71.1 9.4 161 340-522 172-354 (424)
149 PRK11034 clpA ATP-dependent Cl 98.6 1.9E-06 4.9E-11 67.6 11.7 178 341-552 188-385 (758)
150 COG5271 MDN1 AAA ATPase contai 98.6 1.5E-06 3.9E-11 68.4 11.1 146 368-525 1545-1704(4600)
151 KOG0991 consensus 98.5 2.8E-07 7.1E-12 74.0 6.9 218 316-599 13-238 (333)
152 KOG1969 consensus 98.5 2.6E-06 6.6E-11 66.7 11.7 161 365-560 325-506 (877)
153 PRK08727 hypothetical protein; 98.5 1.2E-05 2.9E-10 61.7 15.0 181 363-596 38-229 (233)
154 PRK07940 DNA polymerase III su 98.5 5.2E-07 1.3E-11 71.9 7.9 159 340-517 6-186 (395)
155 COG3829 RocR Transcriptional r 98.5 3.4E-06 8.6E-11 65.8 11.8 199 358-595 261-495 (560)
156 COG0606 Predicted ATPase with 98.5 6.7E-07 1.7E-11 71.1 8.1 142 340-511 180-380 (490)
157 pfam00308 Bac_DnaA Bacterial d 98.5 4.7E-07 1.2E-11 72.2 7.0 172 368-574 36-218 (219)
158 PRK09862 putative ATP-dependen 98.5 3.2E-06 8.3E-11 65.9 11.0 162 612-786 4-167 (506)
159 PTZ00111 DNA replication licen 98.4 1.5E-06 3.9E-11 68.4 8.4 164 337-527 449-666 (916)
160 PRK08769 DNA polymerase III su 98.4 2.6E-06 6.5E-11 66.7 9.2 147 344-517 9-179 (319)
161 TIGR03015 pepcterm_ATPase puta 98.4 0.00011 2.8E-09 54.3 17.4 199 365-595 42-263 (269)
162 CHL00095 clpC Clp protease ATP 98.4 9.5E-06 2.4E-10 62.3 11.8 174 341-550 181-375 (823)
163 PRK10865 protein disaggregatio 98.4 1.1E-05 2.8E-10 61.9 12.0 178 340-551 179-376 (857)
164 KOG0726 consensus 98.4 1.7E-07 4.4E-12 75.5 2.6 168 332-522 178-368 (440)
165 TIGR03346 chaperone_ClpB ATP-d 98.4 1.2E-05 3.2E-10 61.5 11.8 180 340-553 174-373 (852)
166 KOG0735 consensus 98.3 1.2E-05 3E-10 61.7 11.2 205 339-580 667-893 (952)
167 PRK05917 DNA polymerase III su 98.3 3E-06 7.8E-11 66.1 7.9 125 360-509 13-153 (290)
168 PRK04132 replication factor C 98.3 1.1E-06 2.9E-11 69.3 4.8 98 480-600 673-771 (863)
169 TIGR03345 VI_ClpV1 type VI sec 98.2 2.1E-05 5.3E-10 59.8 10.5 179 336-550 185-384 (852)
170 PRK09087 hypothetical protein; 98.2 0.00012 3E-09 54.1 14.1 173 362-596 40-220 (226)
171 PRK05707 DNA polymerase III su 98.2 4.7E-05 1.2E-09 57.1 12.1 133 366-517 22-172 (328)
172 COG3604 FhlA Transcriptional r 98.2 1.7E-05 4.2E-10 60.5 9.7 173 364-569 245-453 (550)
173 KOG0741 consensus 98.2 2E-05 5.1E-10 59.9 10.0 164 363-553 255-440 (744)
174 KOG0732 consensus 98.2 1.1E-05 2.8E-10 61.8 8.6 356 340-753 266-660 (1080)
175 PRK12422 chromosomal replicati 98.2 8.2E-06 2.1E-10 62.8 7.9 179 368-579 143-328 (455)
176 TIGR02880 cbbX_cfxQ CbbX prote 98.2 2.9E-05 7.4E-10 58.7 10.3 176 327-527 10-212 (284)
177 PRK08939 primosomal protein Dn 98.2 6E-05 1.5E-09 56.3 11.5 88 349-444 142-229 (306)
178 TIGR01817 nifA Nif-specific re 98.2 9.1E-06 2.3E-10 62.5 7.3 277 349-682 222-571 (574)
179 COG0542 clpA ATP-binding subun 98.1 5.3E-05 1.3E-09 56.7 11.1 174 340-549 171-366 (786)
180 pfam01078 Mg_chelatase Magnesi 98.1 6.2E-06 1.6E-10 63.8 6.1 151 340-511 4-203 (207)
181 TIGR00602 rad24 checkpoint pro 98.1 1.2E-05 3E-10 61.7 7.5 126 317-462 76-236 (670)
182 PRK06871 DNA polymerase III su 98.1 0.00013 3.3E-09 53.7 12.8 133 365-517 22-172 (324)
183 KOG2680 consensus 98.1 2.2E-05 5.7E-10 59.5 8.8 203 360-573 60-413 (454)
184 PRK00149 dnaA chromosomal repl 98.1 2.4E-05 6.1E-10 59.3 8.9 186 368-596 147-344 (447)
185 pfam01637 Arch_ATPase Archaeal 98.1 0.00024 6.1E-09 51.8 13.7 168 358-550 12-211 (223)
186 PRK06090 DNA polymerase III su 98.1 5.3E-05 1.4E-09 56.7 10.3 135 362-516 21-173 (319)
187 COG1221 PspF Transcriptional r 98.1 0.00034 8.6E-09 50.6 14.0 212 337-574 80-311 (403)
188 KOG0729 consensus 98.1 1.8E-05 4.6E-10 60.3 7.4 86 367-461 212-305 (435)
189 TIGR02173 cyt_kin_arch cytidyl 98.1 3.1E-06 7.9E-11 66.1 3.4 59 368-445 2-60 (173)
190 pfam03266 DUF265 Protein of un 98.1 5.4E-06 1.4E-10 64.2 4.6 121 369-508 2-156 (168)
191 KOG0742 consensus 98.1 7.3E-05 1.9E-09 55.7 10.4 199 306-529 303-534 (630)
192 PRK08116 hypothetical protein; 98.1 7.5E-05 1.9E-09 55.6 10.3 104 347-463 90-200 (262)
193 COG0593 DnaA ATPase involved i 98.1 5.3E-05 1.4E-09 56.7 9.5 177 365-574 112-296 (408)
194 KOG1514 consensus 98.0 0.00054 1.4E-08 49.1 14.3 181 363-579 419-630 (767)
195 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.8E-09 54.4 10.6 295 343-685 212-690 (774)
196 COG1484 DnaC DNA replication p 98.0 0.00015 3.9E-09 53.2 10.6 88 365-462 104-194 (254)
197 PRK13695 putative NTPase; Prov 97.9 1.4E-05 3.5E-10 61.1 4.9 94 368-465 5-130 (174)
198 PRK07276 DNA polymerase III su 97.9 6.7E-05 1.7E-09 55.9 8.3 162 344-537 3-180 (290)
199 KOG2227 consensus 97.9 0.00084 2.1E-08 47.6 13.9 210 364-621 173-413 (529)
200 COG0606 Predicted ATPase with 97.9 0.00033 8.3E-09 50.7 11.6 151 624-786 2-154 (490)
201 PRK07952 DNA replication prote 97.9 0.00023 6E-09 51.8 10.7 86 366-463 96-187 (242)
202 TIGR00678 holB DNA polymerase 97.9 0.00011 2.8E-09 54.4 8.8 144 358-521 6-191 (216)
203 PRK08699 DNA polymerase III su 97.9 7.8E-05 2E-09 55.4 8.1 134 364-517 19-179 (325)
204 pfam05673 DUF815 Protein of un 97.9 0.0014 3.6E-08 45.9 14.5 178 339-558 28-211 (248)
205 pfam03215 Rad17 Rad17 cell cyc 97.9 0.00036 9.1E-09 50.4 11.4 112 361-489 40-170 (490)
206 PRK13406 bchD magnesium chelat 97.9 0.00064 1.6E-08 48.5 12.6 191 356-568 16-223 (584)
207 TIGR02442 Cob-chelat-sub cobal 97.9 0.00029 7.5E-09 51.1 10.6 181 343-566 8-280 (688)
208 PRK08154 anaerobic benzoate ca 97.8 4.9E-05 1.2E-09 57.0 6.3 75 298-398 91-165 (304)
209 TIGR02640 gas_vesic_GvpN gas v 97.8 2.7E-05 6.9E-10 58.9 5.0 206 344-593 7-255 (265)
210 PRK06620 hypothetical protein; 97.8 0.0011 2.8E-08 46.7 12.8 164 366-595 44-213 (214)
211 TIGR02915 PEP_resp_reg putativ 97.8 0.00013 3.3E-09 53.8 7.6 256 251-592 90-386 (451)
212 TIGR03499 FlhF flagellar biosy 97.8 0.00015 3.7E-09 53.4 7.7 93 265-399 133-232 (282)
213 pfam06309 Torsin Torsin. This 97.8 0.00022 5.5E-09 52.1 8.4 77 327-403 13-95 (127)
214 PRK05703 flhF flagellar biosyn 97.7 0.00073 1.9E-08 48.1 10.7 129 264-440 150-295 (412)
215 PRK06995 flhF flagellar biosyn 97.7 0.0003 7.7E-09 51.0 8.5 81 365-450 175-268 (404)
216 KOG1968 consensus 97.7 0.00018 4.6E-09 52.7 7.0 182 337-552 319-521 (871)
217 PRK07993 DNA polymerase III su 97.7 0.00018 4.5E-09 52.8 6.9 139 361-518 19-175 (334)
218 pfam08298 AAA_PrkA PrkA AAA do 97.6 0.00017 4.4E-09 52.8 5.8 54 339-392 58-111 (358)
219 COG1618 Predicted nucleotide k 97.6 5.3E-05 1.4E-09 56.7 3.0 88 369-463 8-129 (179)
220 PRK00131 aroK shikimate kinase 97.6 6.9E-05 1.8E-09 55.8 3.6 33 364-396 2-34 (175)
221 COG3283 TyrR Transcriptional r 97.6 0.0053 1.3E-07 41.6 13.2 166 365-566 227-426 (511)
222 pfam01695 IstB IstB-like ATP b 97.6 8.5E-05 2.2E-09 55.1 4.0 105 349-466 32-139 (178)
223 TIGR00390 hslU heat shock prot 97.5 0.0002 5.2E-09 52.3 5.6 163 426-598 262-452 (463)
224 PRK13948 shikimate kinase; Pro 97.5 9.6E-05 2.4E-09 54.8 3.8 34 364-397 8-41 (182)
225 TIGR00390 hslU heat shock prot 97.5 0.0002 5.2E-09 52.3 5.5 88 335-436 8-105 (463)
226 PRK05057 aroK shikimate kinase 97.5 8.7E-05 2.2E-09 55.1 3.5 30 368-397 6-35 (172)
227 PRK12723 flagellar biosynthesi 97.5 0.0016 4.1E-08 45.5 10.0 45 344-388 147-196 (388)
228 PRK13947 shikimate kinase; Pro 97.5 9.1E-05 2.3E-09 54.9 3.5 29 369-397 4-32 (171)
229 PRK13946 shikimate kinase; Pro 97.5 0.00011 2.7E-09 54.4 3.5 38 360-397 14-51 (195)
230 cd00464 SK Shikimate kinase (S 97.5 0.00012 3E-09 54.1 3.5 29 369-397 2-30 (154)
231 COG0703 AroK Shikimate kinase 97.5 9.7E-05 2.5E-09 54.7 3.1 30 367-396 3-32 (172)
232 COG1373 Predicted ATPase (AAA+ 97.4 0.0065 1.7E-07 40.9 12.4 138 365-534 35-186 (398)
233 pfam00931 NB-ARC NB-ARC domain 97.4 0.001 2.6E-08 46.9 8.1 154 346-524 3-170 (285)
234 PRK13531 regulatory ATPase Rav 97.4 4.8E-05 1.2E-09 57.0 1.1 130 364-514 37-183 (498)
235 TIGR02858 spore_III_AA stage I 97.4 0.0013 3.2E-08 46.3 8.2 131 325-493 94-242 (282)
236 PRK03731 aroL shikimate kinase 97.4 0.00016 4.1E-09 53.1 3.5 29 369-397 5-33 (172)
237 KOG0480 consensus 97.4 0.0035 8.9E-08 42.9 10.4 157 336-521 342-540 (764)
238 PRK13949 shikimate kinase; Pro 97.4 0.00016 4.1E-09 53.0 3.5 29 369-397 4-32 (169)
239 PRK06964 DNA polymerase III su 97.4 0.00078 2E-08 47.8 6.9 139 362-519 17-200 (342)
240 PRK12377 putative replication 97.3 0.00067 1.7E-08 48.4 6.3 86 366-462 101-190 (248)
241 PRK00625 shikimate kinase; Pro 97.3 0.00019 4.9E-09 52.5 3.5 30 369-398 3-32 (173)
242 PRK06835 DNA replication prote 97.3 0.002 5E-08 44.8 8.7 90 366-464 183-275 (330)
243 KOG1970 consensus 97.3 0.00089 2.3E-08 47.4 6.8 177 344-544 91-296 (634)
244 KOG0741 consensus 97.3 0.0024 6.2E-08 44.1 9.0 85 349-445 517-610 (744)
245 PRK05818 DNA polymerase III su 97.3 0.0018 4.7E-08 45.0 8.3 173 364-571 6-198 (262)
246 KOG2035 consensus 97.3 0.01 2.7E-07 39.3 12.0 164 361-566 29-227 (351)
247 pfam01057 Parvo_NS1 Parvovirus 97.3 0.0054 1.4E-07 41.5 10.6 155 326-510 77-239 (271)
248 KOG1808 consensus 97.2 0.00092 2.4E-08 47.3 6.2 138 358-514 432-590 (1856)
249 pfam00910 RNA_helicase RNA hel 97.2 0.00033 8.4E-09 50.7 3.6 98 369-490 1-104 (105)
250 PRK09270 frcK putative fructos 97.2 0.0019 5E-08 44.9 7.3 43 361-403 29-76 (230)
251 PRK09183 transposase/IS protei 97.1 0.00024 6.2E-09 51.7 2.3 161 316-515 65-246 (258)
252 PRK06526 transposase; Provisio 97.1 0.0003 7.6E-09 51.0 2.7 135 350-512 84-236 (254)
253 PRK03839 putative kinase; Prov 97.1 0.00037 9.5E-09 50.3 3.0 29 368-396 2-30 (180)
254 PRK12724 flagellar biosynthesi 97.1 0.0037 9.4E-08 42.8 8.0 81 364-450 221-313 (432)
255 KOG0990 consensus 97.1 0.0045 1.1E-07 42.1 8.1 183 316-547 27-217 (360)
256 COG3854 SpoIIIAA ncharacterize 97.0 0.0012 3E-08 46.5 5.0 104 369-497 140-262 (308)
257 PRK06696 uridine kinase; Valid 97.0 0.0032 8.1E-08 43.2 7.1 49 360-409 21-72 (227)
258 PRK13951 bifunctional shikimat 97.0 0.00063 1.6E-08 48.5 3.5 29 369-397 3-31 (488)
259 PRK08181 transposase; Validate 97.0 0.00042 1.1E-08 49.9 2.5 126 365-516 105-248 (269)
260 KOG1400 consensus 97.0 0.0029 7.4E-08 43.5 6.6 106 24-136 62-175 (371)
261 PRK06921 hypothetical protein; 97.0 0.0016 4E-08 45.6 5.1 89 345-444 95-187 (265)
262 cd02020 CMPK Cytidine monophos 97.0 0.00098 2.5E-08 47.1 4.0 36 368-405 1-36 (147)
263 cd01882 BMS1 Bms1. Bms1 is an 97.0 0.0013 3.3E-08 46.2 4.5 107 363-492 36-145 (225)
264 COG1936 Predicted nucleotide k 96.9 0.00066 1.7E-08 48.4 2.7 28 367-395 1-28 (180)
265 KOG0482 consensus 96.9 0.0027 6.9E-08 43.8 5.7 155 339-507 342-521 (721)
266 pfam05729 NACHT NACHT domain. 96.8 0.0068 1.7E-07 40.8 7.5 141 368-523 2-162 (165)
267 PRK10416 cell division protein 96.8 0.022 5.7E-07 36.8 10.1 164 266-500 228-397 (499)
268 KOG4658 consensus 96.8 0.014 3.7E-07 38.3 9.1 48 342-395 161-211 (889)
269 KOG3347 consensus 96.8 0.0011 2.9E-08 46.6 3.3 36 363-398 4-39 (176)
270 KOG1051 consensus 96.8 0.013 3.2E-07 38.7 8.5 143 277-446 136-293 (898)
271 cd01428 ADK Adenylate kinase ( 96.8 0.0017 4.3E-08 45.4 4.0 56 369-433 2-57 (194)
272 COG5271 MDN1 AAA ATPase contai 96.7 0.059 1.5E-06 33.6 11.6 157 369-553 891-1062(4600)
273 PRK02496 adk adenylate kinase; 96.7 0.0025 6.3E-08 44.0 4.1 58 369-435 4-61 (185)
274 COG0552 FtsY Signal recognitio 96.6 0.05 1.3E-06 34.2 10.7 160 265-493 66-234 (340)
275 COG3284 AcoR Transcriptional a 96.6 0.0055 1.4E-07 41.4 5.8 164 365-567 336-535 (606)
276 pfam07693 KAP_NTPase KAP famil 96.6 0.032 8.1E-07 35.7 9.6 51 434-501 161-211 (301)
277 PRK12726 flagellar biosynthesi 96.6 0.02 5.1E-07 37.2 8.3 77 283-400 163-240 (407)
278 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.01 2.6E-07 39.4 6.7 113 364-506 24-141 (144)
279 pfam02367 UPF0079 Uncharacteri 96.6 0.0034 8.7E-08 43.0 4.3 31 363-393 12-42 (123)
280 PRK09435 arginine/ornithine tr 96.5 0.0067 1.7E-07 40.8 5.6 145 325-513 12-177 (325)
281 PRK00300 gmk guanylate kinase; 96.5 0.0034 8.6E-08 43.0 4.1 33 363-395 4-36 (208)
282 PRK06731 flhF flagellar biosyn 96.5 0.048 1.2E-06 34.3 9.9 39 363-401 72-110 (270)
283 cd03216 ABC_Carb_Monos_I This 96.5 0.01 2.6E-07 39.4 6.4 79 364-442 24-109 (163)
284 cd01120 RecA-like_NTPases RecA 96.5 0.016 4E-07 38.0 7.3 39 368-406 1-42 (165)
285 cd03114 ArgK-like The function 96.5 0.0083 2.1E-07 40.1 5.9 122 368-512 1-126 (148)
286 KOG0477 consensus 96.5 0.0067 1.7E-07 40.8 5.3 232 339-595 449-730 (854)
287 PRK04220 2-phosphoglycerate ki 96.5 0.079 2E-06 32.7 10.8 99 271-395 22-121 (306)
288 KOG1942 consensus 96.4 0.0028 7.2E-08 43.6 3.3 51 494-554 351-401 (456)
289 COG0563 Adk Adenylate kinase a 96.4 0.0027 6.9E-08 43.8 3.2 56 368-432 2-57 (178)
290 pfam01768 Birna_VP4 Birnavirus 96.4 0.0052 1.3E-07 41.6 4.7 65 680-750 179-244 (264)
291 TIGR00368 TIGR00368 Mg chelata 96.4 0.0015 3.9E-08 45.6 1.9 22 366-387 213-234 (505)
292 COG1072 CoaA Panthothenate kin 96.4 0.024 6E-07 36.6 7.9 76 351-429 70-159 (283)
293 PRK00771 signal recognition pa 96.4 0.1 2.6E-06 31.9 13.2 106 362-502 93-199 (433)
294 PRK07263 consensus 96.3 0.11 2.7E-06 31.7 12.1 41 361-401 198-242 (453)
295 TIGR03263 guanyl_kin guanylate 96.3 0.0059 1.5E-07 41.2 4.3 33 366-398 1-33 (180)
296 PRK07261 topology modulation p 96.3 0.0051 1.3E-07 41.7 3.9 29 369-397 3-31 (171)
297 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.0038 9.6E-08 42.7 3.1 78 364-442 23-107 (157)
298 COG2074 2-phosphoglycerate kin 96.2 0.0078 2E-07 40.3 4.6 42 354-395 77-118 (299)
299 COG1102 Cmk Cytidylate kinase 96.2 0.0047 1.2E-07 42.0 3.4 56 368-436 2-58 (179)
300 cd00227 CPT Chloramphenicol (C 96.2 0.014 3.5E-07 38.4 5.7 39 365-403 1-39 (175)
301 PRK04040 adenylate kinase; Pro 96.2 0.011 2.8E-07 39.2 5.1 44 366-409 2-56 (189)
302 PRK08118 topology modulation p 96.2 0.0057 1.5E-07 41.3 3.7 29 369-397 4-32 (167)
303 pfam03308 ArgK ArgK protein. T 96.2 0.012 2.9E-07 39.0 5.2 114 360-513 23-157 (267)
304 pfam03969 AFG1_ATPase AFG1-lik 96.1 0.051 1.3E-06 34.1 8.4 176 268-511 4-201 (361)
305 cd03227 ABC_Class2 ABC-type Cl 96.1 0.013 3.3E-07 38.6 5.2 91 365-462 20-129 (162)
306 PRK10646 putative ATPase; Prov 96.1 0.0092 2.3E-07 39.7 4.5 30 364-393 26-55 (153)
307 PRK13543 cytochrome c biogenes 96.1 0.0065 1.7E-07 40.9 3.7 40 364-403 35-74 (214)
308 PTZ00088 adenylate kinase 1; P 96.1 0.0089 2.3E-07 39.9 4.3 59 368-435 2-60 (225)
309 PRK00023 cmk cytidylate kinase 96.1 0.0079 2E-07 40.2 3.9 32 364-395 2-33 (225)
310 cd01130 VirB11-like_ATPase Typ 96.1 0.047 1.2E-06 34.4 7.9 100 349-462 12-122 (186)
311 COG2607 Predicted ATPase (AAA+ 96.1 0.14 3.7E-06 30.7 10.8 180 340-558 61-244 (287)
312 cd02030 NDUO42 NADH:Ubiquinone 96.1 0.0052 1.3E-07 41.6 3.0 28 368-395 1-28 (219)
313 PRK05636 replicative DNA helic 96.0 0.12 3.2E-06 31.2 10.0 39 362-400 263-305 (507)
314 COG1120 FepC ABC-type cobalami 96.0 0.0081 2.1E-07 40.2 3.7 39 364-402 26-64 (258)
315 cd02025 PanK Pantothenate kina 96.0 0.017 4.4E-07 37.6 5.4 35 368-402 1-40 (220)
316 cd03115 SRP The signal recogni 96.0 0.0058 1.5E-07 41.2 2.9 24 367-390 1-24 (173)
317 COG5192 BMS1 GTP-binding prote 95.9 0.0082 2.1E-07 40.1 3.6 16 124-139 291-306 (1077)
318 PRK09825 idnK D-gluconate kina 95.9 0.01 2.5E-07 39.5 4.0 32 364-395 1-32 (176)
319 PRK09361 radB DNA repair and r 95.9 0.015 3.9E-07 38.1 4.9 28 363-390 20-47 (224)
320 PRK09302 circadian clock prote 95.9 0.0072 1.8E-07 40.6 3.2 31 362-392 262-293 (501)
321 pfam00448 SRP54 SRP54-type pro 95.9 0.0065 1.7E-07 40.9 2.9 39 366-404 1-42 (196)
322 PRK04182 cytidylate kinase; Pr 95.9 0.0092 2.3E-07 39.7 3.7 28 368-395 2-29 (178)
323 pfam00437 GSPII_E Type II/IV s 95.9 0.044 1.1E-06 34.6 7.1 100 348-460 125-229 (283)
324 COG2766 PrkA Putative Ser prot 95.9 0.033 8.4E-07 35.5 6.5 195 339-546 76-363 (649)
325 PRK11545 gntK gluconate kinase 95.9 0.012 3E-07 39.0 4.1 33 363-395 5-37 (177)
326 PRK13477 bifunctional pantoate 95.9 0.011 2.7E-07 39.2 3.9 32 364-395 282-313 (512)
327 PRK00279 adk adenylate kinase; 95.8 0.0079 2E-07 40.3 3.1 55 369-432 3-57 (215)
328 COG0410 LivF ABC-type branched 95.8 0.0071 1.8E-07 40.6 2.8 39 364-402 27-65 (237)
329 PRK10070 glycine betaine trans 95.8 0.014 3.6E-07 38.3 4.2 126 632-788 236-365 (400)
330 COG4088 Predicted nucleotide k 95.8 0.008 2E-07 40.2 2.9 141 367-563 2-149 (261)
331 PRK05595 replicative DNA helic 95.8 0.19 4.8E-06 29.8 14.3 40 362-401 197-240 (444)
332 pfam00625 Guanylate_kin Guanyl 95.7 0.031 7.8E-07 35.8 5.8 29 367-395 2-30 (182)
333 PRK12727 flagellar biosynthesi 95.7 0.064 1.6E-06 33.4 7.5 58 342-399 320-386 (557)
334 pfam07931 CPT Chloramphenicol 95.7 0.014 3.6E-07 38.3 4.1 36 366-401 1-36 (174)
335 COG1855 ATPase (PilT family) [ 95.7 0.013 3.3E-07 38.6 3.9 70 308-392 217-289 (604)
336 COG0464 SpoVK ATPases of the A 95.7 0.023 5.9E-07 36.7 5.1 130 360-513 12-155 (494)
337 PRK04328 hypothetical protein; 95.7 0.017 4.3E-07 37.8 4.4 38 362-399 20-60 (250)
338 cd02021 GntK Gluconate kinase 95.7 0.011 2.7E-07 39.2 3.4 30 368-397 1-30 (150)
339 PRK05291 trmE tRNA modificatio 95.7 0.2 5E-06 29.7 10.7 44 344-387 193-237 (445)
340 cd01394 radB RadB. The archaea 95.7 0.027 6.8E-07 36.2 5.3 28 363-390 16-43 (218)
341 PRK07667 uridine kinase; Provi 95.7 0.038 9.6E-07 35.1 6.0 51 355-406 4-57 (190)
342 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.012 3.2E-07 38.7 3.5 39 364-402 28-66 (218)
343 pfam00406 ADK Adenylate kinase 95.6 0.011 2.9E-07 39.1 3.2 56 371-435 1-56 (186)
344 pfam06745 KaiC KaiC. This fami 95.6 0.021 5.3E-07 37.1 4.6 39 362-400 15-57 (231)
345 pfam05272 VirE Virulence-assoc 95.6 0.21 5.5E-06 29.4 10.1 159 314-509 1-169 (198)
346 cd00071 GMPK Guanosine monopho 95.6 0.013 3.4E-07 38.5 3.5 50 368-417 1-52 (137)
347 cd03294 ABC_Pro_Gly_Bertaine T 95.6 0.014 3.5E-07 38.4 3.6 38 364-401 48-85 (269)
348 pfam01745 IPT Isopentenyl tran 95.6 0.034 8.7E-07 35.5 5.6 77 368-447 3-89 (232)
349 PRK06904 replicative DNA helic 95.5 0.22 5.5E-06 29.4 9.5 42 361-402 216-261 (472)
350 COG3842 PotA ABC-type spermidi 95.5 0.016 4E-07 38.0 3.7 47 356-402 20-67 (352)
351 PRK11248 tauB taurine transpor 95.5 0.014 3.6E-07 38.4 3.4 39 364-402 25-63 (255)
352 PRK10851 sulfate/thiosulfate t 95.5 0.018 4.5E-07 37.6 3.9 39 364-402 26-64 (352)
353 TIGR03575 selen_PSTK_euk L-ser 95.5 0.018 4.7E-07 37.5 3.9 24 370-393 3-26 (340)
354 TIGR03265 PhnT2 putative 2-ami 95.5 0.018 4.5E-07 37.6 3.8 39 364-402 28-66 (353)
355 cd03223 ABCD_peroxisomal_ALDP 95.5 0.016 4.1E-07 37.9 3.6 27 364-390 25-51 (166)
356 PRK10418 nikD nickel transport 95.5 0.0031 8E-08 43.3 -0.0 29 364-392 27-55 (254)
357 PRK11860 bifunctional 3-phosph 95.5 0.033 8.3E-07 35.6 5.2 35 361-395 437-471 (662)
358 PRK00091 miaA tRNA delta(2)-is 95.5 0.015 3.8E-07 38.1 3.4 34 364-399 2-35 (304)
359 PRK13540 cytochrome c biogenes 95.4 0.018 4.6E-07 37.6 3.7 38 364-401 25-62 (200)
360 cd03299 ABC_ModC_like Archeal 95.4 0.02 5E-07 37.3 3.9 38 364-401 23-60 (235)
361 PRK05541 adenylylsulfate kinas 95.4 0.012 3.1E-07 38.8 2.9 33 361-393 2-34 (176)
362 cd03231 ABC_CcmA_heme_exporter 95.4 0.021 5.4E-07 37.0 4.1 39 364-402 24-62 (201)
363 PRK13808 adenylate kinase; Pro 95.4 0.023 5.9E-07 36.7 4.3 58 369-435 3-60 (297)
364 cd02023 UMPK Uridine monophosp 95.4 0.023 5.7E-07 36.8 4.1 34 368-401 1-35 (198)
365 pfam00006 ATP-synt_ab ATP synt 95.4 0.071 1.8E-06 33.0 6.6 36 358-393 7-42 (213)
366 cd03278 ABC_SMC_barmotin Barmo 95.4 0.021 5.4E-07 37.0 3.9 26 365-391 22-47 (197)
367 PRK11650 ugpC glycerol-3-phosp 95.3 0.021 5.3E-07 37.0 3.8 38 364-401 28-65 (358)
368 COG0802 Predicted ATPase or ki 95.3 0.017 4.4E-07 37.7 3.4 54 364-440 23-77 (149)
369 PRK13764 ATPase; Provisional 95.3 0.023 5.8E-07 36.8 4.0 46 336-392 239-285 (605)
370 cd02028 UMPK_like Uridine mono 95.3 0.024 6E-07 36.6 4.0 34 368-401 1-37 (179)
371 KOG2485 consensus 95.3 0.084 2.1E-06 32.5 6.8 76 364-456 141-218 (335)
372 cd01856 YlqF YlqF. Proteins o 95.3 0.03 7.6E-07 35.9 4.5 47 341-387 86-136 (171)
373 TIGR03574 selen_PSTK L-seryl-t 95.3 0.021 5.2E-07 37.1 3.6 72 369-442 2-76 (249)
374 PRK13538 cytochrome c biogenes 95.3 0.021 5.4E-07 37.0 3.7 38 364-401 25-62 (204)
375 PRK11124 artP arginine transpo 95.2 0.028 7.2E-07 36.1 4.2 38 364-401 26-63 (242)
376 PRK07004 replicative DNA helic 95.2 0.28 7E-06 28.6 13.0 41 361-401 208-252 (460)
377 PRK06762 hypothetical protein; 95.2 0.11 2.7E-06 31.7 7.2 105 366-479 2-107 (166)
378 PRK11432 fbpC ferric transport 95.2 0.024 6E-07 36.6 3.8 38 364-401 30-67 (351)
379 PRK01184 hypothetical protein; 95.2 0.022 5.7E-07 36.8 3.6 41 367-410 2-43 (183)
380 TIGR01351 adk adenylate kinase 95.2 0.016 4.1E-07 37.9 2.9 43 369-434 2-44 (232)
381 pfam01202 SKI Shikimate kinase 95.2 0.014 3.5E-07 38.4 2.5 23 375-397 1-23 (158)
382 PRK11000 maltose/maltodextrin 95.2 0.025 6.5E-07 36.4 3.8 39 364-402 27-65 (369)
383 PRK09302 circadian clock prote 95.2 0.039 1E-06 35.0 4.8 47 363-411 21-71 (501)
384 smart00487 DEXDc DEAD-like hel 95.1 0.2 5.1E-06 29.6 8.3 95 367-461 25-157 (201)
385 PRK11831 putative ABC transpor 95.1 0.023 5.9E-07 36.7 3.5 38 364-401 32-69 (269)
386 PRK10771 thiQ thiamine transpo 95.1 0.03 7.6E-07 35.9 4.0 39 364-402 23-61 (233)
387 COG4650 RtcR Sigma54-dependent 95.1 0.1 2.7E-06 31.8 6.8 213 364-601 207-446 (531)
388 TIGR02237 recomb_radB DNA repa 95.1 0.018 4.5E-07 37.6 2.8 40 364-403 10-53 (223)
389 cd03290 ABCC_SUR1_N The SUR do 95.1 0.024 6.1E-07 36.6 3.4 39 364-402 25-63 (218)
390 TIGR03600 phage_DnaB phage rep 95.1 0.12 3E-06 31.4 6.9 40 361-400 189-232 (421)
391 TIGR03415 ABC_choXWV_ATP choli 95.0 0.04 1E-06 34.9 4.5 44 347-390 26-74 (382)
392 PRK05480 uridine kinase; Provi 95.0 0.033 8.5E-07 35.5 4.1 38 364-401 4-42 (209)
393 PRK10247 putative ABC transpor 95.0 0.029 7.4E-07 35.9 3.8 38 364-401 31-68 (225)
394 cd03253 ABCC_ATM1_transporter 95.0 0.023 5.9E-07 36.7 3.3 39 364-402 25-63 (236)
395 PRK13768 GTPase; Provisional 95.0 0.038 9.8E-07 35.1 4.4 38 367-404 3-43 (253)
396 PRK08082 consensus 95.0 0.32 8.1E-06 28.1 13.9 40 362-401 199-242 (453)
397 cd00984 DnaB_C DnaB helicase C 95.0 0.043 1.1E-06 34.7 4.6 40 361-400 8-51 (242)
398 PRK11701 phnK phosphonates tra 95.0 0.027 6.8E-07 36.2 3.5 38 364-401 30-67 (258)
399 cd03297 ABC_ModC_molybdenum_tr 95.0 0.032 8.1E-07 35.7 3.9 39 363-401 20-58 (214)
400 pfam00519 PPV_E1_C Papillomavi 95.0 0.089 2.3E-06 32.3 6.2 45 351-395 245-291 (432)
401 TIGR03258 PhnT 2-aminoethylpho 95.0 0.033 8.4E-07 35.5 3.9 38 364-401 29-68 (362)
402 PRK10619 histidine/lysine/argi 95.0 0.031 7.8E-07 35.8 3.8 38 364-401 29-66 (257)
403 cd01123 Rad51_DMC1_radA Rad51_ 95.0 0.019 4.8E-07 37.4 2.7 31 363-393 16-46 (235)
404 cd03238 ABC_UvrA The excision 95.0 0.044 1.1E-06 34.6 4.6 24 364-387 19-42 (176)
405 cd01124 KaiC KaiC is a circadi 95.0 0.033 8.4E-07 35.5 3.9 30 370-399 3-35 (187)
406 pfam00485 PRK Phosphoribulokin 95.0 0.021 5.2E-07 37.1 2.8 28 368-395 1-28 (196)
407 PRK11231 fecE iron-dicitrate t 95.0 0.031 7.9E-07 35.7 3.7 39 364-402 26-64 (255)
408 PRK08006 replicative DNA helic 95.0 0.33 8.4E-06 28.0 13.5 41 361-401 219-263 (471)
409 PRK04132 replication factor C 94.9 0.12 3E-06 31.4 6.6 14 612-625 742-755 (863)
410 PRK10895 putative ABC transpor 94.9 0.028 7.2E-07 36.1 3.5 38 364-401 27-64 (241)
411 PRK13539 cytochrome c biogenes 94.9 0.022 5.7E-07 36.8 3.0 28 364-391 26-53 (206)
412 cd03222 ABC_RNaseL_inhibitor T 94.9 0.026 6.7E-07 36.3 3.3 69 364-441 23-97 (177)
413 cd03224 ABC_TM1139_LivF_branch 94.9 0.036 9.2E-07 35.2 4.0 38 364-401 24-61 (222)
414 PRK11264 putative amino-acid A 94.9 0.029 7.5E-07 35.9 3.5 39 364-402 25-63 (248)
415 cd03295 ABC_OpuCA_Osmoprotecti 94.9 0.037 9.3E-07 35.2 4.0 38 364-401 25-62 (242)
416 cd01859 MJ1464 MJ1464. This f 94.9 0.039 1E-06 35.0 4.1 43 339-386 79-121 (156)
417 PRK10253 iron-enterobactin tra 94.9 0.034 8.6E-07 35.5 3.7 38 364-401 31-68 (265)
418 PRK10575 iron-hydroxamate tran 94.8 0.034 8.8E-07 35.4 3.7 38 364-401 35-72 (265)
419 PRK11144 modC molybdate transp 94.8 0.039 9.9E-07 35.0 4.0 38 364-401 22-59 (352)
420 PRK13644 cbiO cobalt transport 94.8 0.031 7.9E-07 35.7 3.5 38 364-401 26-63 (274)
421 TIGR03410 urea_trans_UrtE urea 94.8 0.039 1E-06 35.0 3.9 38 364-401 24-61 (230)
422 TIGR03596 GTPase_YlqF ribosome 94.8 0.047 1.2E-06 34.4 4.3 53 366-441 117-170 (276)
423 PRK10419 nikE nickel transport 94.8 0.035 8.9E-07 35.4 3.6 38 364-401 36-73 (266)
424 cd03245 ABCC_bacteriocin_expor 94.8 0.019 5E-07 37.3 2.3 39 364-402 28-66 (220)
425 PRK10867 signal recognition pa 94.8 0.36 9.2E-06 27.7 13.6 105 365-502 99-205 (453)
426 COG0467 RAD55 RecA-superfamily 94.8 0.047 1.2E-06 34.4 4.3 39 363-401 20-61 (260)
427 COG1419 FlhF Flagellar GTP-bin 94.8 0.037 9.5E-07 35.1 3.8 39 365-403 202-245 (407)
428 cd03234 ABCG_White The White s 94.8 0.025 6.3E-07 36.5 2.9 27 364-390 31-57 (226)
429 PRK13548 hmuV hemin importer A 94.8 0.034 8.7E-07 35.4 3.5 39 364-402 26-64 (257)
430 cd03301 ABC_MalK_N The N-termi 94.7 0.042 1.1E-06 34.7 4.0 39 364-402 24-62 (213)
431 PRK12337 2-phosphoglycerate ki 94.7 0.37 9.5E-06 27.6 13.4 172 190-395 113-291 (492)
432 PRK05748 replicative DNA helic 94.7 0.37 9.5E-06 27.6 13.9 41 361-401 198-242 (448)
433 PRK09580 sufC cysteine desulfu 94.7 0.039 1E-06 35.0 3.8 25 364-388 25-49 (248)
434 PRK03846 adenylylsulfate kinas 94.7 0.043 1.1E-06 34.7 4.0 33 360-392 18-50 (198)
435 KOG3079 consensus 94.7 0.052 1.3E-06 34.0 4.4 66 363-436 5-70 (195)
436 cd03235 ABC_Metallic_Cations A 94.7 0.039 1E-06 35.0 3.8 38 364-401 23-60 (213)
437 PRK09165 replicative DNA helic 94.7 0.38 9.6E-06 27.5 18.3 28 361-388 200-227 (484)
438 COG0194 Gmk Guanylate kinase [ 94.7 0.05 1.3E-06 34.2 4.3 26 365-390 3-28 (191)
439 PRK10261 glutathione transport 94.7 0.034 8.6E-07 35.5 3.4 38 364-401 348-385 (623)
440 PRK13542 consensus 94.7 0.044 1.1E-06 34.6 4.0 39 364-402 42-80 (224)
441 PRK13631 cbiO cobalt transport 94.7 0.033 8.4E-07 35.6 3.3 41 364-404 50-90 (320)
442 TIGR03608 L_ocin_972_ABC putat 94.7 0.04 1E-06 34.9 3.7 38 364-401 22-59 (206)
443 cd01122 GP4d_helicase GP4d_hel 94.7 0.075 1.9E-06 32.9 5.1 42 360-401 24-69 (271)
444 CHL00131 ycf16 sulfate ABC tra 94.7 0.037 9.4E-07 35.2 3.5 25 364-388 30-54 (252)
445 PRK10789 putative multidrug tr 94.7 0.041 1E-06 34.9 3.8 38 365-402 340-377 (569)
446 TIGR01448 recD_rel helicase, R 94.7 0.26 6.6E-06 28.7 7.9 260 329-623 335-667 (769)
447 COG4240 Predicted kinase [Gene 94.7 0.26 6.6E-06 28.8 7.8 202 349-575 31-279 (300)
448 cd03229 ABC_Class3 This class 94.7 0.045 1.2E-06 34.5 4.0 39 364-402 24-62 (178)
449 pfam03029 ATP_bind_1 Conserved 94.7 0.032 8.2E-07 35.6 3.2 33 372-404 2-37 (234)
450 PRK13541 cytochrome c biogenes 94.6 0.043 1.1E-06 34.7 3.8 38 364-401 24-61 (195)
451 KOG0479 consensus 94.6 0.051 1.3E-06 34.1 4.2 159 334-511 296-509 (818)
452 KOG1803 consensus 94.6 0.036 9.2E-07 35.2 3.4 140 482-661 477-620 (649)
453 cd03257 ABC_NikE_OppD_transpor 94.6 0.039 1E-06 35.0 3.6 38 364-401 29-66 (228)
454 PRK10584 putative ABC transpor 94.6 0.05 1.3E-06 34.2 4.1 38 364-401 34-71 (228)
455 pfam01583 APS_kinase Adenylyls 94.6 0.035 8.9E-07 35.4 3.2 27 365-391 1-27 (157)
456 PRK13638 cbiO cobalt transport 94.6 0.048 1.2E-06 34.3 3.9 38 364-401 25-62 (271)
457 PRK09452 potA putrescine/sperm 94.6 0.049 1.2E-06 34.2 3.9 39 364-402 41-79 (378)
458 PRK09536 btuD corrinoid ABC tr 94.6 0.046 1.2E-06 34.5 3.8 39 364-402 26-64 (409)
459 cd03226 ABC_cobalt_CbiO_domain 94.6 0.042 1.1E-06 34.8 3.6 38 364-401 24-61 (205)
460 cd03261 ABC_Org_Solvent_Resist 94.5 0.044 1.1E-06 34.6 3.7 28 364-391 24-51 (235)
461 cd01673 dNK Deoxyribonucleosid 94.5 0.042 1.1E-06 34.7 3.6 33 368-400 1-33 (193)
462 KOG0964 consensus 94.5 0.41 1E-05 27.3 13.0 11 120-130 130-140 (1200)
463 cd03218 ABC_YhbG The ABC trans 94.5 0.051 1.3E-06 34.1 3.9 38 364-401 24-61 (232)
464 PRK13635 cbiO cobalt transport 94.5 0.04 1E-06 34.9 3.4 39 364-402 31-69 (279)
465 pfam03796 DnaB_C DnaB-like hel 94.5 0.061 1.6E-06 33.5 4.3 40 361-400 14-57 (186)
466 cd03291 ABCC_CFTR1 The CFTR su 94.5 0.044 1.1E-06 34.6 3.6 28 364-391 61-88 (282)
467 cd03225 ABC_cobalt_CbiO_domain 94.5 0.038 9.7E-07 35.1 3.3 38 364-401 25-62 (211)
468 PRK13544 consensus 94.5 0.047 1.2E-06 34.3 3.7 39 364-402 25-63 (208)
469 COG2425 Uncharacterized protei 94.5 0.42 1.1E-05 27.1 9.3 124 330-491 242-378 (437)
470 cd03289 ABCC_CFTR2 The CFTR su 94.5 0.053 1.4E-06 34.0 3.9 37 364-401 28-64 (275)
471 cd03214 ABC_Iron-Siderophores_ 94.4 0.051 1.3E-06 34.1 3.8 39 364-402 23-61 (180)
472 PRK09563 rbgA ribosomal biogen 94.4 0.057 1.5E-06 33.7 4.0 50 369-441 124-173 (282)
473 cd03296 ABC_CysA_sulfate_impor 94.4 0.054 1.4E-06 33.9 3.9 38 364-401 26-63 (239)
474 TIGR00064 ftsY signal recognit 94.4 0.3 7.7E-06 28.3 7.6 179 265-502 4-187 (284)
475 PRK04837 ATP-dependent RNA hel 94.4 0.33 8.4E-06 28.0 7.8 56 397-452 117-178 (423)
476 cd03269 ABC_putative_ATPase Th 94.4 0.033 8.4E-07 35.5 2.7 38 364-401 24-61 (210)
477 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.06 1.5E-06 33.6 4.0 39 364-402 32-70 (207)
478 cd03232 ABC_PDR_domain2 The pl 94.3 0.063 1.6E-06 33.4 4.1 25 364-388 31-55 (192)
479 COG1428 Deoxynucleoside kinase 94.3 0.048 1.2E-06 34.3 3.4 29 366-394 4-32 (216)
480 PRK13546 teichoic acids export 94.3 0.054 1.4E-06 34.0 3.7 28 364-391 48-75 (264)
481 cd01129 PulE-GspE PulE/GspE Th 94.3 0.23 6E-06 29.1 6.9 98 338-443 58-159 (264)
482 cd03247 ABCC_cytochrome_bd The 94.3 0.038 9.6E-07 35.1 2.8 45 364-409 26-70 (178)
483 TIGR03411 urea_trans_UrtD urea 94.3 0.065 1.7E-06 33.3 4.0 39 364-402 26-64 (242)
484 PRK11629 lolD lipoprotein tran 94.2 0.059 1.5E-06 33.6 3.8 27 364-390 33-59 (233)
485 cd01393 recA_like RecA is a b 94.2 0.051 1.3E-06 34.1 3.5 31 363-393 16-46 (226)
486 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.2 0.058 1.5E-06 33.7 3.7 39 364-402 27-65 (238)
487 cd03298 ABC_ThiQ_thiamine_tran 94.2 0.057 1.4E-06 33.8 3.7 39 364-402 22-60 (211)
488 cd03237 ABC_RNaseL_inhibitor_d 94.2 0.057 1.4E-06 33.8 3.7 30 364-393 23-52 (246)
489 PRK11147 ABC transporter ATPas 94.2 0.051 1.3E-06 34.1 3.4 28 364-391 343-370 (632)
490 PRK06067 flagellar accessory p 94.2 0.049 1.2E-06 34.3 3.3 37 362-398 28-67 (241)
491 PRK13642 cbiO cobalt transport 94.2 0.055 1.4E-06 33.9 3.6 29 364-392 31-59 (277)
492 cd04155 Arl3 Arl3 subfamily. 94.2 0.051 1.3E-06 34.1 3.4 31 358-388 6-36 (173)
493 PRK10744 phosphate transporter 94.2 0.033 8.5E-07 35.5 2.5 35 357-391 26-61 (257)
494 cd03256 ABC_PhnC_transporter A 94.2 0.067 1.7E-06 33.2 4.0 38 364-401 25-62 (241)
495 cd03254 ABCC_Glucan_exporter_l 94.2 0.026 6.6E-07 36.4 1.8 39 364-402 27-65 (229)
496 PRK13634 cbiO cobalt transport 94.1 0.063 1.6E-06 33.4 3.8 39 364-402 18-56 (276)
497 cd03259 ABC_Carb_Solutes_like 94.1 0.067 1.7E-06 33.2 3.9 38 364-401 24-61 (213)
498 PRK13547 hmuV hemin importer A 94.1 0.074 1.9E-06 32.9 4.1 27 364-390 25-51 (273)
499 cd03215 ABC_Carb_Monos_II This 94.1 0.044 1.1E-06 34.6 2.9 38 364-401 24-61 (182)
500 cd03281 ABC_MSH5_euk MutS5 hom 94.1 0.17 4.5E-06 30.1 6.0 109 366-476 29-156 (213)
No 1
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=100.00 E-value=0 Score=2345.15 Aligned_cols=759 Identities=51% Similarity=0.850 Sum_probs=739.2
Q ss_pred EEEEECCCEECCCEEEEEECC--CHHHHHHHHHHHHCCCEEE---EEECCCCCCCCC-----CHHHEECCCEEEEEEEEE
Q ss_conf 566317825688714306429--4899999999997298499---997368677788-----865602531489999979
Q gi|254780270|r 29 PLLPLRDIVVFPYMIVPLFVG--REKSVRALDEAMNSHKKII---LVTQMNSNDENP-----IASSVYRIGTIVDIVQIL 98 (820)
Q Consensus 29 PIlPLrn~VLFPG~vlPL~V~--eprsi~aIe~al~~d~~I~---vV~qkD~~~e~p-----~~edLy~VGTlakI~qi~ 98 (820)
|++|+|+.|||||+++||+|+ |++++++|++++..++.++ +|+|||.+.++| ..+|+|++||+|+|+++.
T Consensus 1 p~Lp~~~~~lFPg~~~~i~v~~D~~~~~~~i~~~~~~~~~~~G~~~f~~kd~~~~~~~~~i~~~~d~Y~~Gv~a~I~~~~ 80 (941)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIVVGSDREKSIKLIKEALRLKQPYLGIVVFLQKDDDNEEPKLVITEEDDIYSVGVVAQILEML 80 (941)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 95411782016844189986058789999999998721100102110010056667432014621100676215445420
Q ss_pred ECCC-----CEEEEEEEEEEEEEEEEEEE---------------------------------------------------
Q ss_conf 9889-----80999999754799998870---------------------------------------------------
Q gi|254780270|r 99 RLPD-----GTVKILVEGSVRARIVEYIE--------------------------------------------------- 122 (820)
Q Consensus 99 klpD-----G~~~ILVeGl~RvkI~ei~~--------------------------------------------------- 122 (820)
+++| ++++++++|++|++|.++++
T Consensus 81 ~~~~~~~~~~~~~~~v~Gl~R~~i~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~v~~eL~~~~~~e~~~~ 160 (941)
T TIGR00763 81 KLPDEKSGTATYKVVVEGLRRIRIKELVDPDEEVDPEEEEAEDARKPRDKKSASKKSPKLEDAEVESELSAKEPKEEKEE 160 (941)
T ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECHHHHCCCCCCCCCC
T ss_conf 26777656551689986033057743268887888766650113311013341777887244201503311367875568
Q ss_pred -----------CCCEEEEEEEEEC---CCC--CCCHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHC----CCCHH
Q ss_conf -----------7981999999804---888--8847899999999999999998545--577788876412----68867
Q gi|254780270|r 123 -----------REDFLEAITQVLP---DPT--EDPVELEALSRSVIAEFSNYIKLNK--KISPEVIGITSQ----IEGFS 180 (820)
Q Consensus 123 -----------~~pyl~A~Ve~l~---d~~--~d~~eleAL~~~L~e~f~eli~l~~--~i~~E~~~~l~~----iddp~ 180 (820)
+.+|+.|+|+.++ +.+ .++.+++|+.+.+++.|++++++++ +.+.+....... +++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~v~v~~l~m~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S~~v~~~P~ 240 (941)
T TIGR00763 161 ESEELPEITLQKEEYLVVRVDNLKMEKDEPFDKDDEEIKALTREIKETFRELISLSKLFREQPALLSALEDSANVIDEPG 240 (941)
T ss_pred CCCCCCCHHHHCCCEEEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 87544300110167558986421001024530002023478999999999998523120003777432544475104622
Q ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 8999988523589-89999987432479-99999999999865---5666777754333322233211221011110000
Q gi|254780270|r 181 KLADVIAANLSIK-VAERQKILEAVSVK-ERLEMLLVFMESEI---SVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQ 255 (820)
Q Consensus 181 ~LAD~IAs~L~l~-~eeKQeLLE~~Di~-eRLe~Ll~lL~~Ei---EilkLq~eI~~kVk~kidk~QREyyLREQLKaIq 255 (820)
+|||++|+.+.+. ..++|++||+.|+. +||++++.+|++|+ +.++|+++|.++|++||+++|||||||||||+||
T Consensus 241 ~LaD~~Aa~~~~~e~~e~Q~vLe~~n~~h~RL~k~l~l~~~E~Ghi~~~kl~~~I~~~V~~k~~~~QreYyL~EQLKaIk 320 (941)
T TIGR00763 241 RLADLVAASLQLKEIEELQEVLETVNIEHKRLKKALELLKKELGHIELLKLQNKIAKKVEEKMEKTQREYYLREQLKAIK 320 (941)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58889998632036268999987408525789999999886310467899999988999998777667888888999988
Q ss_pred H--HCCCCCCCCHHH-HHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC--CC
Q ss_conf 1--012466550467-89998522247--88578888899999998753110257899999876540415876632--21
Q gi|254780270|r 256 K--ELDNGEEGRDEI-SDFEARISKIR--LSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKT--KK 328 (820)
Q Consensus 256 k--ELGe~ed~~~Ei-~el~~Ki~~~~--lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~--~~ 328 (820)
+ |||+.+|.++++ ++|++||++++ ||+++++++++||+||++|+|+|+||+|+|||||||++|||+++|++ ++
T Consensus 321 kyhELG~~~d~~~~~~~~~~~kle~~~e~~P~~~~k~~~~El~kL~~l~~~SsE~~v~RnYLDwl~~lPW~~~S~~f~n~ 400 (941)
T TIGR00763 321 KYHELGIEKDDKDELIEKLKEKLEELKEFLPEEVKKVIEKELTKLELLEPSSSEFTVTRNYLDWLTDLPWGKYSKEFDNL 400 (941)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 87525899986478999999998740574774689999999987505883353046799999999837722147026652
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-----------HHCCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 068899877665201168999999999999-----------842444673-59986056565027999999770882499
Q gi|254780270|r 329 NLDFAIRILDQDHFGLEKVKERIIEYLAVQ-----------MRVIKNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYVR 396 (820)
Q Consensus 329 dl~~a~~iLd~~hyGl~~vK~rile~lav~-----------~~~~~~~g~-il~l~gppgvGKts~~~sia~al~r~f~~ 396 (820)
||.+|++|||+|||||++|||||||||||+ +|+++.+|| ||||||||||||||||+|||+||||+|+|
T Consensus 401 Dl~~A~~~LD~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR 480 (941)
T TIGR00763 401 DLKRAKEILDEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFVR 480 (941)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 18999998316788887730341358889899987640364447788887678720726954222789999996880499
Q ss_pred EECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHH--HHCCCCHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 86188888888356320014567128999998327887399993315542--3117711556655406001681332010
Q gi|254780270|r 397 MSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMG--SDLRGDPSAALLEVLDPAQNSSFVDHYL 474 (820)
Q Consensus 397 islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~--~~~~gdp~~allevldp~qn~~f~d~y~ 474 (820)
||||||+||||||||||||||||||||||||++|||+||||||||||||| +|+|||||||||||||||||++|.||||
T Consensus 481 ~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~LlDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYl 560 (941)
T TIGR00763 481 FSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLILLDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSDHYL 560 (941)
T ss_pred EEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCC
T ss_conf 95267220311278643203467257899987604158806862022001678865563788864128643604255300
Q ss_pred CCCCCCCCEE--EEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 3523644279--999348655-4413117247998258786899989998608989986257813132289999999731
Q gi|254780270|r 475 EVEYDLSDVM--FIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 475 ~~~~dls~v~--fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
|||||||+|| ||||||+++ ||+|||||||||+|||||.+||++||++||+||+++.|||+++++.|+|+||..||+.
T Consensus 561 dvp~DLS~V~CyFi~TAN~~d~IP~PLLDRMEvI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~ 640 (941)
T TIGR00763 561 DVPFDLSKVLCYFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKY 640 (941)
T ss_pred CCCCCHHHHHHHEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHH
T ss_conf 23400420021000244757677722137402452388876789999985471367987088813221268999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCC------------------C---------------------------------
Q ss_conf 7741023478887999989876542117------------------8---------------------------------
Q gi|254780270|r 552 FTHEAGVRSFERALMKIARKAVTKIVKN------------------S--------------------------------- 580 (820)
Q Consensus 552 Yt~EaGvR~l~r~i~~i~r~~~~~~~~~------------------~--------------------------------- 580 (820)
||||||||||+|+|++||||+|+++++. .
T Consensus 641 YtREaGVRNL~r~I~~i~RK~A~~~~~~~~~~~~P~~~~dp~ea~~~e~~~e~~~k~~~e~~~~~~~~~~~~~~~~~~~~ 720 (941)
T TIGR00763 641 YTREAGVRNLERQIEKICRKAAVKLVEQVKEEEEPAEAADPKEAEGGEKKKERTKKKTSEKSSDQESEKEKSEIQLKKSE 720 (941)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 51320213389999999999999998714633377634771120466655675546567656433457740001001376
Q ss_pred CCEECCCHHHHHHHHCCCCCCCC-CHHCCCCCCCCCEEEECCCCCEEEEEEEEEECC--------CCCEEECCCHHHHHH
Q ss_conf 52012796786753052000332-000223365000000000168079999999748--------997244325689999
Q gi|254780270|r 581 DTTVSINENNLQDYLGVPRYKYG-KIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPG--------KGEITITGNLKEIMK 651 (820)
Q Consensus 581 ~~~~~i~~~~l~~~lg~~~~~~~-~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~g--------~g~l~lTG~lg~vmk 651 (820)
..++.|+.++|++|||+|+|+.+ +.++...||||||||||++||++|+||++.+.| +|.|++|||||||||
T Consensus 721 ~~~~~i~~~~L~~ylG~p~F~~~E~~~~~~~pGvV~GLAWT~~GG~~L~iEt~~~~gq~Dl~~~kkG~L~lTGqLGDVMK 800 (941)
T TIGR00763 721 KESVEITEDNLKKYLGKPVFTSEERAYETTPPGVVMGLAWTPMGGDTLFIETTKVAGQKDLKGDKKGSLELTGQLGDVMK 800 (941)
T ss_pred CCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHH
T ss_conf 31378546788865289630645455457898568733223247713104479763740346688986677156525999
Q ss_pred HHHHHHHHHHHHHHHHCCCCH----HHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 999999999999888629985----5742078147448888478887306899999999983688875610663685030
Q gi|254780270|r 652 ESILAASSYVRSKATTFGIIP----SAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRG 727 (820)
Q Consensus 652 ES~~~A~s~~k~~~~~~~~~~----~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G 727 (820)
|||++|+||+|+++..+++++ +||+++||||||||||||||||||||||+|||+|++||+|||+|+||||||||||
T Consensus 801 ESA~~Alt~~r~~~~~~~i~~~~~l~ff~~~diH~HvPEGAtPKDGPSAG~tm~TaL~Sl~~~~~Vr~~~AMTGE~TLrG 880 (941)
T TIGR00763 801 ESAQIALTYVRSIAEDLGISPPKVLKFFEKADIHLHVPEGATPKDGPSAGITMATALLSLATGKPVRADVAMTGEITLRG 880 (941)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC
T ss_conf 99999999999999861888702342532265202137889898862479999999999970879885535510041023
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEECCHHHH-HHHHHCCHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 250006568999999970996998036775-507761488770979998193999888760
Q gi|254780270|r 728 RVLPIGGLKEKLLAALRAGVTKVLIPEENI-KDLMDIPENVKNGLEIIPVSFMGEVLKHAL 787 (820)
Q Consensus 728 ~VlpiGGi~eK~laA~raGi~~viiP~~N~-~d~~~ip~~~~~~l~~~~v~~~~evl~~al 787 (820)
+||||||||||++||||||||+||+|++|+ +||+|||++|+++|+||||+||+|||++||
T Consensus 881 ~VLpiGGlKEK~iAA~R~Gik~iilP~~N~e~Dl~elP~~v~e~L~~~~V~~~~ev~~~af 941 (941)
T TIGR00763 881 KVLPIGGLKEKTIAAKRAGIKTIILPEKNRERDLEELPENVKEGLEIHFVKHYDEVLKKAF 941 (941)
T ss_pred CEEEECCHHHHHHHHHHHCEEEEECCCHHHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHC
T ss_conf 5620050468888853505007774612001526620398872784110032789999829
No 2
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=0 Score=2210.86 Aligned_cols=777 Identities=58% Similarity=0.933 Sum_probs=764.8
Q ss_pred CCCCEEEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECC
Q ss_conf 67763675663178256887143064294899999999997298499997368677788865602531489999979988
Q gi|254780270|r 22 GADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLP 101 (820)
Q Consensus 22 ~~~~~~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~d~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klp 101 (820)
.+..+.||++||||+|+|||+++||+|+|++|+++++.|+++++.+++++|+|+..++|+.+|||+|||+|+|+|+.++|
T Consensus 5 ~~e~l~LPvLPLRd~VvFPgmviPL~VGR~kSI~AlE~A~~~d~~I~LVaQKD~~~deP~~eDLY~VGTlAkI~QviklP 84 (784)
T PRK10787 5 RSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLP 84 (784)
T ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEEEEEECC
T ss_conf 78862467998589102799205899688899999999996499799997568887999814522562799999967879
Q ss_pred CCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHH
Q ss_conf 98099999975479999887079819999998048888847899999999999999998545577788876412688678
Q gi|254780270|r 102 DGTVKILVEGSVRARIVEYIEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSK 181 (820)
Q Consensus 102 DG~~~ILVeGl~RvkI~ei~~~~pyl~A~Ve~l~d~~~d~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~iddp~~ 181 (820)
||+++|+|+|++||+|.++.+.+||+.|.+++++++..++.+.+++++.+++.|++|+++++.+++++...+.++++|++
T Consensus 85 DG~vkVLVeGl~RvkI~~~~~~~pyl~A~Ve~l~~~~~d~~E~EAL~r~li~~f~~~v~l~~~ip~E~l~~l~~iddp~k 164 (784)
T PRK10787 85 DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPAR 164 (784)
T ss_pred CCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHH
T ss_conf 99489999987789999997478968999998068888966899999999999999998576799999999983788899
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC
Q ss_conf 99998852358989999987432479999999999998655666777754333322233211221011110000101246
Q gi|254780270|r 182 LADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNG 261 (820)
Q Consensus 182 LAD~IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~lL~~EiEilkLq~eI~~kVk~kidk~QREyyLREQLKaIqkELGe~ 261 (820)
|+|++|++++++.++||++||+.|+.+|+++++.+|++|+++++++++|+++|+++|+++|||||||||||+||+|||++
T Consensus 165 LAD~IAs~L~ls~eeKQeLLE~~dvkeRLekll~lL~kElEileLe~kI~~kVkekm~K~QREyyLREQLkaIq~ELGe~ 244 (784)
T PRK10787 165 LADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM 244 (784)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 99998732799999999998638999999999999999999999999999999976406778999874102220220567
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 65504678999852224788578888899999998753110257899999876540415876632210688998776652
Q gi|254780270|r 262 EEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDH 341 (820)
Q Consensus 262 ed~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~h 341 (820)
++..+|+++|++||++++||+++++++.+|++||++|+|+||||+|+||||||+++|||+++|++.+||++|+++||+||
T Consensus 245 ~~~~~e~~~~~~ki~~~~~p~~~~~~~~~El~rl~~~~~~s~E~~v~r~YLd~l~~LPW~~~t~d~~dl~~A~~iLd~dH 324 (784)
T PRK10787 245 DDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDH 324 (784)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 64124899999999877999899999999999997189989418899999999975998888787569999999876543
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH
Q ss_conf 01168999999999999842444673599860565650279999997708824998618888888835632001456712
Q gi|254780270|r 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPG 421 (820)
Q Consensus 342 yGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg 421 (820)
|||+||||||||||||++++++.+||||||||||||||||||||||+||||+|+||||||||||||||||||||||||||
T Consensus 325 yGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampG 404 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPG 404 (784)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH
T ss_conf 06577999999999999862467787799646998772469999999858986998068878888825643343443683
Q ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCC
Q ss_conf 89999983278873999933155423117711556655406001681332010352364427999934865544131172
Q gi|254780270|r 422 RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDR 501 (820)
Q Consensus 422 ~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~dr 501 (820)
||||+|++|||+|||||||||||+|++|||||+||||||||||||++|+|||||+|||||+||||||||+++||+||+||
T Consensus 405 rii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~~ip~pLlDR 484 (784)
T PRK10787 405 KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDR 484 (784)
T ss_pred HHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCCCCCHHHHHH
T ss_conf 89999997489885665003555224558998899998459765564000322046452225899732767787677631
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 47998258786899989998608989986257813132289999999731774102347888799998987654211785
Q gi|254780270|r 502 MEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 502 me~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
||+|+++|||.+||++||++||+|||+++|||++.++.|++++|.+||++||||||||+|||+|++||||+|++++.++.
T Consensus 485 mE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~~~~~~~~~~ 564 (784)
T PRK10787 485 MEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKS 564 (784)
T ss_pred EEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 21554116767889999997453999998289965674399999998753365444251688999999999999970788
Q ss_pred -CEECCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHH
Q ss_conf -2012796786753052000332000223365000000000168079999999748997244325689999999999999
Q gi|254780270|r 582 -TTVSINENNLQDYLGVPRYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY 660 (820)
Q Consensus 582 -~~~~i~~~~l~~~lg~~~~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~ 660 (820)
.+++|+.+++.+|||+++|..+....+++||+|||||||++||++|+||++.+||+|++++||||||||||||++|+||
T Consensus 565 ~~~~~i~~~~l~~~lg~~~~~~~~~~~~~~~Gv~~GLawt~~GG~~l~iE~~~~~gkg~l~lTG~lg~vmkES~~~A~s~ 644 (784)
T PRK10787 565 LKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTV 644 (784)
T ss_pred CCCEEECHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 78558889999998299878812441368885799999815797689999998169886788624068999999999999
Q ss_pred HHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHH
Q ss_conf 99988862998557420781474488884788873068999999999836888756106636850302500065689999
Q gi|254780270|r 661 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLL 740 (820)
Q Consensus 661 ~k~~~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~l 740 (820)
+||++.+++++++||+++|||||||+||||||||||||||||||+|++|++|||+|+||||||||||+||||||||||++
T Consensus 645 ~r~~~~~~~i~~~~~~~~diHiH~P~Ga~pKDGPSAGit~~tal~S~~~~~~v~~~~amTGEitL~G~VlpiGG~keK~l 724 (784)
T PRK10787 645 VRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLL 724 (784)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECEEEEEECCHHHHHH
T ss_conf 99989985899430126754895799999898742899999999999869998999655565660202782078999999
Q ss_pred HHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9997099699803677550776148877097999819399988876027887655555
Q gi|254780270|r 741 AALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALLRMPDPLESEG 798 (820)
Q Consensus 741 aA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al~~~~~~~~~~~ 798 (820)
||+|+||++||||++|++|++|||++|+++|+||||+||+|||++||.+.|.+.+...
T Consensus 725 aA~r~gi~~vi~P~~N~~d~~~ip~~v~~~l~~~~v~~~~ev~~~al~~~p~~~~~~~ 782 (784)
T PRK10787 725 AAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVT 782 (784)
T ss_pred HHHHCCCCEEEECHHHHHHHHHCCHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCCCC
T ss_conf 9998499899945212355987499988698999939499999999756998861424
No 3
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=2183.19 Aligned_cols=769 Identities=62% Similarity=0.992 Sum_probs=756.3
Q ss_pred EEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECCCCEE
Q ss_conf 67566317825688714306429489999999999729-84999973686777888656025314899999799889809
Q gi|254780270|r 27 IYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSH-KKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTV 105 (820)
Q Consensus 27 ~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~d-~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klpDG~~ 105 (820)
.||++|||+.|+||+|++||+|+|++|+++++.++.++ ++|++++|+|...++|..+|+|+|||+|+|.|+.++|||++
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~~dly~vGt~a~I~q~~~lpdg~~ 88 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLYEVGTLAKILQILKLPDGTV 88 (782)
T ss_pred CCEEEEECCCEECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCE
T ss_conf 63068715852078851668727753799999997278877999981376657997011331200116345355799847
Q ss_pred EEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 99999754799998870798199999980488888-47899999999999999998545577788876412688678999
Q gi|254780270|r 106 KILVEGSVRARIVEYIEREDFLEAITQVLPDPTED-PVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLAD 184 (820)
Q Consensus 106 ~ILVeGl~RvkI~ei~~~~pyl~A~Ve~l~d~~~d-~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~iddp~~LAD 184 (820)
+|+++|++|++|.++...++|+.|.++.+++...+ ..+.+|+.+.+.+.|++|+++++.++++....+..+++|++|||
T Consensus 89 kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i~~~~klad 168 (782)
T COG0466 89 KVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPGKLAD 168 (782)
T ss_pred EEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf 99997641689875426777169998863777654326799999999999999998455789999977751564578999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCC
Q ss_conf 98852358989999987432479999999999998655666777754333322233211221011110000101246655
Q gi|254780270|r 185 VIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEG 264 (820)
Q Consensus 185 ~IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~lL~~EiEilkLq~eI~~kVk~kidk~QREyyLREQLKaIqkELGe~ed~ 264 (820)
++|++++++.+++|++||+.|+.+||++++.+|..|++.++++++|+++|+++|+|+|||||||||||+||+|||++++.
T Consensus 169 ~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~ 248 (782)
T COG0466 169 TIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDD 248 (782)
T ss_pred HHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99985778789999998718899999999999999999999999999999998778889999999999999985888654
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 04678999852224788578888899999998753110257899999876540415876632210688998776652011
Q gi|254780270|r 265 RDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGL 344 (820)
Q Consensus 265 ~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl 344 (820)
.+|+++|++||++..||++|++++++|++||++|+|+||||+|+||||||+++|||+++|+++.||++|+++||+|||||
T Consensus 249 ~~e~~~~~~kie~~~~p~evkek~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGL 328 (782)
T COG0466 249 KDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGL 328 (782)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 55899999997516999899999999999985079999168899899999982887655421322999998744355671
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHH
Q ss_conf 68999999999999842444673599860565650279999997708824998618888888835632001456712899
Q gi|254780270|r 345 EKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424 (820)
Q Consensus 345 ~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii 424 (820)
++|||||+|||||++++++.+||||||||||||||||||+|||+||||+|+|||||||||||||||||||||||||||||
T Consensus 329 ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIi 408 (782)
T COG0466 329 EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKII 408 (782)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHH
T ss_conf 16899999999999861467885799978998870118999999958977999547654277753553123356872899
Q ss_pred HHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE
Q ss_conf 999832788739999331554231177115566554060016813320103523644279999348655-4413117247
Q gi|254780270|r 425 QSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME 503 (820)
Q Consensus 425 ~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme 503 (820)
|+|++||++|||||||||||||+|||||||||||||||||||++|.|||+|+|||||+||||||||+++ ||+||+||||
T Consensus 409 Q~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME 488 (782)
T COG0466 409 QGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME 488 (782)
T ss_pred HHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCEE
T ss_conf 99998677687478640333167777886888886269765676122201676644325888603751329867843030
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99825878689998999860898998625781313228999999973177410234788879999898765421178520
Q gi|254780270|r 504 IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTT 583 (820)
Q Consensus 504 ~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~ 583 (820)
+|+++|||.+||++||++||+|+++++|||++.++.|+|+||.+||++||||||||+|+|+|++||||++++++.++.+.
T Consensus 489 iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~ 568 (782)
T COG0466 489 VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKS 568 (782)
T ss_pred EEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 56426888699999999844568999759982335565899999999876762103899999999999999997257566
Q ss_pred -ECCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf -1279678675305200033200022336500000000016807999999974899724432568999999999999999
Q gi|254780270|r 584 -VSINENNLQDYLGVPRYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVR 662 (820)
Q Consensus 584 -~~i~~~~l~~~lg~~~~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~~k 662 (820)
+.|+.++|++|||.++|++++..+.++||+|||||||++||++|+||++.+||+|++++||||||||||||++|+||+|
T Consensus 569 ~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gkg~l~lTG~LGdVMKESa~~A~s~vr 648 (782)
T COG0466 569 IVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGKGKLTLTGSLGDVMKESAQAALSYVR 648 (782)
T ss_pred CEEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 24427889999739863475311247887058544442478648999888716875079960579999999999999999
Q ss_pred HHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 98886299855742078147448888478887306899999999983688875610663685030250006568999999
Q gi|254780270|r 663 SKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAA 742 (820)
Q Consensus 663 ~~~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA 742 (820)
|++.+++++++||+++||||||||||||||||||||||||||+|++|++|||+++||||||||||+||||||+|||++||
T Consensus 649 s~a~~~~i~~~~fek~dIHiHVPeGAtPKDGPSAGitm~TAlvS~lt~~~V~~~vAMTGEITLrG~VLpIGGLKEKllAA 728 (782)
T COG0466 649 SRAEKLGIDPDFFEKRDIHIHVPEGATPKDGPSAGITMATALVSLLTGKPVRADVAMTGEITLRGRVLPIGGLKEKLLAA 728 (782)
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHH
T ss_conf 98987199833333451388789999999886158999999999973999888854124578630246225598999999
Q ss_pred HHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHCCCCCCCC
Q ss_conf 97099699803677550776148877097999819399988876027887655
Q gi|254780270|r 743 LRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALLRMPDPLE 795 (820)
Q Consensus 743 ~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al~~~~~~~~ 795 (820)
+|+|||+||+|++|++|++|||++|+++|+||||+||+|||++||+..|.+.+
T Consensus 729 ~R~GIk~viiP~~N~~DleeiP~~vk~~l~i~~V~~~deVlk~al~~~~~~~~ 781 (782)
T COG0466 729 HRGGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVGNPEPIS 781 (782)
T ss_pred HHCCCCEEECCCCCCCCHHHCCHHHHCCCEEEEECCHHHHHHHHHCCCCCCCC
T ss_conf 86598589646545014876779887497499925099999997168988777
No 4
>KOG2004 consensus
Probab=100.00 E-value=0 Score=1865.71 Aligned_cols=773 Identities=40% Similarity=0.648 Sum_probs=716.7
Q ss_pred CCCCCCEEEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCHH---------------
Q ss_conf 14677636756631782568871430642948999999999972-98499997368677788865---------------
Q gi|254780270|r 20 RCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNS-HKKIILVTQMNSNDENPIAS--------------- 83 (820)
Q Consensus 20 ~~~~~~~~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~-d~~I~vV~qkD~~~e~p~~e--------------- 83 (820)
.....+..+|++|++..|||||.++++.|..++.+++|++.+.. ..++|++..||...++....
T Consensus 61 ~~~~~~~~l~~Lpi~~~pLfPGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~ 140 (906)
T KOG2004 61 SVPDVPPRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKD 140 (906)
T ss_pred CCCCCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCC
T ss_conf 88655754524333677767772368882688899999999973086412143036777874044415331245412776
Q ss_pred ------HEECCCEE---EEEEEEEECCCCEEEEEEEEEEEEEEEEEEECCC--EEEEEEEEECCCC-CCCHHHHHHHHHH
Q ss_conf ------60253148---9999979988980999999754799998870798--1999999804888-8847899999999
Q gi|254780270|r 84 ------SVYRIGTI---VDIVQILRLPDGTVKILVEGSVRARIVEYIERED--FLEAITQVLPDPT-EDPVELEALSRSV 151 (820)
Q Consensus 84 ------dLy~VGTl---akI~qi~klpDG~~~ILVeGl~RvkI~ei~~~~p--yl~A~Ve~l~d~~-~d~~eleAL~~~L 151 (820)
-.|+.+.+ +.|.+-.+...+.+.+++.|.+|+++.+...+.+ .+...++.+.+.+ ..+.++.|+..++
T Consensus 141 ~~~~~l~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~~~~~~ka~~~ei 220 (906)
T KOG2004 141 KLRMVLYPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKKDEEIKALTSEI 220 (906)
T ss_pred CHHHHHHHHHEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 12333403330342221145544445666443235652124501210246677425653105677667653778999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH--CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999854557778887641--2688678999988523589899999874324799999999999986556667777
Q gi|254780270|r 152 IAEFSNYIKLNKKISPEVIGITS--QIEGFSKLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKR 229 (820)
Q Consensus 152 ~e~f~eli~l~~~i~~E~~~~l~--~iddp~~LAD~IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~lL~~EiEilkLq~e 229 (820)
...++++++.++.+.+....... ..++|.+|||+.|+....+..+.|++|++.|+.+||++.+.+|++|++..+|+++
T Consensus 221 ~~t~rdii~~n~l~r~~v~~~~~~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~k 300 (906)
T KOG2004 221 LKTLRDIIAVNSLFREQVATLSQLIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQK 300 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999752778999999998734467567889988885147789999987438788999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 5433332223321122101111000010124665504-678999852224788578888899999998753110257899
Q gi|254780270|r 230 IRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRD-EISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVV 308 (820)
Q Consensus 230 I~~kVk~kidk~QREyyLREQLKaIqkELGe~ed~~~-Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~ 308 (820)
|.+.|++++.+.||+|+||||||+|++|||...|.++ ..++|++|++...||+++.+++.+|+.||+.|+++||||+++
T Consensus 301 i~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvt 380 (906)
T KOG2004 301 IGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVT 380 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 53677766657789999999999988761777563166899999886211276999999999999874257556404389
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99987654041587663221068899877665201168999999999999842444673599860565650279999997
Q gi|254780270|r 309 RNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK 388 (820)
Q Consensus 309 r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~ 388 (820)
||||||+++||||++|.+++||.+|+++||+|||||++||+||||||||++|+++.+|+||||+|||||||||||||||+
T Consensus 381 rNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004 381 RNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 89999998488787873530379898763465301688999999999987514667883799868998773218999999
Q ss_pred HHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 70882499861888888883563200145671289999983278873999933155423117711556655406001681
Q gi|254780270|r 389 ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSS 468 (820)
Q Consensus 389 al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~ 468 (820)
||||+|+|+|+||++|+||||||||||||||||||||+|+++|+.|||||||||||+|++++|||||||||+||||||++
T Consensus 461 ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNan 540 (906)
T KOG2004 461 ALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNAN 540 (906)
T ss_pred HHCCCEEEEECCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCC
T ss_conf 84874699853663427764254211001488489999986177886588532234178877986899987439653553
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 3320103523644279999348655-441311724799825878689998999860898998625781313228999999
Q gi|254780270|r 469 FVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLD 547 (820)
Q Consensus 469 f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ 547 (820)
|.|||||||||||+|+||||||.++ ||+|||||||+|+++||+.+||++||++||+|++++.+||+++++.++++|+..
T Consensus 541 FlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~ 620 (906)
T KOG2004 541 FLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLA 620 (906)
T ss_pred HHHHCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHH
T ss_conf 45420266421110688985364456985664122322036722798999999841257898749987865862999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------------CCEECCCHHHHH
Q ss_conf 973177410234788879999898765421178-----------------------------------520127967867
Q gi|254780270|r 548 IIRLFTHEAGVRSFERALMKIARKAVTKIVKNS-----------------------------------DTTVSINENNLQ 592 (820)
Q Consensus 548 ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~-----------------------------------~~~~~i~~~~l~ 592 (820)
+|++||||||||||+|+|++||||+|++++++. ..++.|+.+||.
T Consensus 621 lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~ 700 (906)
T KOG2004 621 LIERYCREAGVRNLQKQIEKICRKVALKVVEGENSKEESAEKNGRESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQ 700 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHH
T ss_conf 99999888767789999999999999999986402335432232224432101344567544666677630365388999
Q ss_pred HHHCCCCCCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCC--CCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 530520003320002233650000000001680799999997489--972443256899999999999999998886299
Q gi|254780270|r 593 DYLGVPRYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGK--GEITITGNLKEIMKESILAASSYVRSKATTFGI 670 (820)
Q Consensus 593 ~~lg~~~~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~g~--g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~ 670 (820)
+|||+|.|+.++.++..+||||+|||||++||.+||||++.+.|. |.|++|||||||||||+++|+||+|+++.++.+
T Consensus 701 d~lG~P~f~~e~~y~~tp~GVvmGLaWT~mGG~~lyvEts~~~~~~~g~l~~TGqLGDVMKESa~iA~t~ar~~~~~~~p 780 (906)
T KOG2004 701 DILGPPVFTSERMYEVTPPGVVMGLAWTAMGGSTLYVETSLMRGLGDGSLEITGQLGDVMKESAQIAYTWARAFLSKKEP 780 (906)
T ss_pred HHHCCCCCCHHHHHCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87489722077775037983699878853787578999887315778856883303888999999999999999876482
Q ss_pred CHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEE
Q ss_conf 85574207814744888847888730689999999998368887561066368503025000656899999997099699
Q gi|254780270|r 671 IPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKV 750 (820)
Q Consensus 671 ~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~v 750 (820)
.+.||++.|||+|||+||||||||||||||+|||+|+++++|||+|+||||||||||+||||||||||++||+|+|+|+|
T Consensus 781 ~n~~l~~~~IHlH~PeGAtpKDGPSAGvTmvTsLlSLa~~kpVr~d~AMTGEvTLtG~VLpiGGiKEK~iAA~RsG~k~i 860 (906)
T KOG2004 781 ENKFLENSDIHLHVPEGATPKDGPSAGVTMVTALLSLALGKPVRQDLAMTGEVTLTGKVLPVGGIKEKTIAARRSGVKTI 860 (906)
T ss_pred CCCHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCEEE
T ss_conf 31001156258856899889998753078999999997099755554212357764446742763788999887288289
Q ss_pred ECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHCCCCC
Q ss_conf 803677550776148877097999819399988876027887
Q gi|254780270|r 751 LIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALLRMPD 792 (820)
Q Consensus 751 iiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al~~~~~ 792 (820)
|+|++|++|++++|++|+++|++|||++|+|||++||...+.
T Consensus 861 i~P~~N~~D~eelp~~vkegLev~~a~~yedv~~~aF~~~~~ 902 (906)
T KOG2004 861 IFPEANRRDFEELPENVKEGLEVHFAETYEDVFEAAFDDGPT 902 (906)
T ss_pred EECCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCH
T ss_conf 725643666987458887067066388899999997278850
No 5
>pfam05362 Lon_C Lon protease (S16) C-terminal proteolytic domain. The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
Probab=100.00 E-value=0 Score=554.26 Aligned_cols=204 Identities=68% Similarity=1.092 Sum_probs=201.9
Q ss_pred CCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 27967867530520003320002233650000000001680799999997489972443256899999999999999998
Q gi|254780270|r 585 SINENNLQDYLGVPRYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSK 664 (820)
Q Consensus 585 ~i~~~~l~~~lg~~~~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~~k~~ 664 (820)
+||+++|.+|||+|+|.++++++.++||+|||||||++||.+|+||++.+||+|++++||+||||||||+++|+||+|++
T Consensus 1 ti~~~~l~~~lG~~~~~~~~~~~~~~iG~vnGLa~t~~GG~il~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~~ks~ 80 (205)
T pfam05362 1 TITAKNLEKYLGVPRFRYEEAEKEDQVGVVTGLAWTEVGGDLLTIEATIMPGKGKLTLTGQLGDVMKESAQAALSYVRSR 80 (205)
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 94978999965997677753446898719999899279978899999995588840034755789999999999999999
Q ss_pred HHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHH
Q ss_conf 88629985574207814744888847888730689999999998368887561066368503025000656899999997
Q gi|254780270|r 665 ATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALR 744 (820)
Q Consensus 665 ~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~r 744 (820)
+.+++++.++|+++|||||||+||+||||||||+||+|||+|+++++||++++||||||||+|+|+||||++||++||+|
T Consensus 81 ~~~~~~~~~~~~~~diHih~p~Ga~pkDGPSAGiai~~Ai~S~l~~~pV~~~iAmTGEIsL~G~VlpIGGv~eKi~aA~r 160 (205)
T pfam05362 81 AEELGIDPDFFEKKDIHIHVPEGATPKDGPSAGVTMATALVSALTGIPVRKDVAMTGEITLRGRVLPIGGLKEKLLAAHR 160 (205)
T ss_pred HHHHCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEEECCHHHHHHHHHH
T ss_conf 99808993246614599972466667777630389999999999488767887996033135679984899999999999
Q ss_pred CCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHC
Q ss_conf 09969980367755077614887709799981939998887602
Q gi|254780270|r 745 AGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALL 788 (820)
Q Consensus 745 aGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al~ 788 (820)
+|+|+||||++|++|++|+|++++++++|+||+|++|||++||+
T Consensus 161 aGik~ViiP~~N~~dl~~ip~~i~~~i~i~~V~~i~evl~~al~ 204 (205)
T pfam05362 161 AGIKTVIIPKENEKDLEEIPENVREGLEIIPVEHVDEVLKHALV 204 (205)
T ss_pred HCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC
T ss_conf 39988997477766799834999769999996939999999747
No 6
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=100.00 E-value=0 Score=496.85 Aligned_cols=466 Identities=30% Similarity=0.519 Sum_probs=344.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99998655666777754333322233211221011-11000010124665504678999852224788578888899999
Q gi|254780270|r 215 VFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHE-QMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQ 293 (820)
Q Consensus 215 ~lL~~EiEilkLq~eI~~kVk~kidk~QREyyLRE-QLKaIqkELGe~ed~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~ 293 (820)
+++..-+..--++++|.++|+.+|.+.|-+|| +| ++-+|+++-|- +...-+++| +||++
T Consensus 76 ~~iad~~A~R~v~~~iE~~ve~~l~erq~~Yl-~Eir~~vlk~~~g~--En~sTLKkl-~~Le~---------------- 135 (616)
T TIGR02903 76 DHIADILARRTVENEIERKVEKKLQERQNKYL-EEIRLQVLKEEKGP--ENSSTLKKL-ERLEK---------------- 135 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCC--CHHHHHHHH-HHHHH----------------
T ss_conf 99999886433567889999999887666899-99988775205788--616788999-98752----------------
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 998753110257899999876540415876632210688998776652011689--999999999998424446735998
Q gi|254780270|r 294 KLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKV--KERIIEYLAVQMRVIKNKGLILCF 371 (820)
Q Consensus 294 rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~v--K~rile~lav~~~~~~~~g~il~l 371 (820)
|++..-+.+=.+.+| |-. +.++ .||-|.-| ..--.+.-++.+.|
T Consensus 136 -Lek~kl~~s~~slLR---------P~~----------------------f~EiVGQerAI~aL--laK~aSPfPQHiiL 181 (616)
T TIGR02903 136 -LEKKKLAKSIQSLLR---------PRA----------------------FSEIVGQERAIKAL--LAKLASPFPQHIIL 181 (616)
T ss_pred -HHHHHHHHHHHHHCC---------CCC----------------------CCCCCCHHHHHHHH--HHHHCCCCCCCEEE
T ss_conf -447889999998628---------766----------------------76433346899999--97631888660785
Q ss_pred ECCCCCCHHHHHHHH---HHHHCC-------CEEEEE---------------CCCCCCHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 605656502799999---977088-------249986---------------1888888883563200145671289999
Q gi|254780270|r 372 VGPPGVGKTSLAQSI---AKATGR-------QYVRMS---------------LGGVYDEADIRGHRRTYIGSMPGRIIQS 426 (820)
Q Consensus 372 ~gppgvGKts~~~si---a~al~r-------~f~~is---------------lgg~~d~~~i~gh~~ty~ga~pg~ii~~ 426 (820)
+||||||||+.||-. ||-|+. +|+-+. ||.||| | |.|+
T Consensus 182 YGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHD---------------P--IYQG 244 (616)
T TIGR02903 182 YGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---------------P--IYQG 244 (616)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC---------------C--CCCC
T ss_conf 5733884789999987621368744761137857515762667741014776776257---------------6--5567
Q ss_pred HHH----CCCCCE-----------EEEEECHHHHHHHCCCCH--HHHHHHHC------------CCCCCC--CEEEEEC-
Q ss_conf 983----278873-----------999933155423117711--55665540------------600168--1332010-
Q gi|254780270|r 427 LKR----AKRSNP-----------LLLLDEIDKMGSDLRGDP--SAALLEVL------------DPAQNS--SFVDHYL- 474 (820)
Q Consensus 427 l~~----~~~~np-----------v~~ldeidk~~~~~~gdp--~~allevl------------dp~qn~--~f~d~y~- 474 (820)
-++ +|+..| |.++|||.-| || .+-||-|| ||.-.+ .|.-..|
T Consensus 245 a~RDLAE~GvPEPk~GLVT~AHGGvLFIDEIGEL------D~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lFe 318 (616)
T TIGR02903 245 ARRDLAETGVPEPKLGLVTDAHGGVLFIDEIGEL------DPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLFE 318 (616)
T ss_pred CCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHH------HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHC
T ss_conf 6401104787989898710047756765021122------2787632444322643665321248753786558888522
Q ss_pred -CCCCCCCCEEEE---EECCCC-CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf -352364427999---934865-544131172479982587868999899986089899862578131322899999997
Q gi|254780270|r 475 -EVEYDLSDVMFI---MTANTL-NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDII 549 (820)
Q Consensus 475 -~~~~dls~v~fi---~tan~~-~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii 549 (820)
+-|-| || ||--+- +|.++||.|---|.+.+.|.+|=..|..+ .-+ +-++.+.++ +..+|
T Consensus 319 ~GAPAD-----FvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~Iv~~-----AA~-----klnv~L~~g-V~e~I 382 (616)
T TIGR02903 319 EGAPAD-----FVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEIVLN-----AAE-----KLNVKLAEG-VEELI 382 (616)
T ss_pred CCCCCC-----EEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHHHHH-----HHH-----HCCCCCCCC-HHHHH
T ss_conf 688825-----68726615882440512330143132179887899999999-----888-----617700036-48787
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCCEECCCHHHHHHHHCCCCC---CCCCHHCCCCCCCCCEEEECCCCC
Q ss_conf 317741023478887999989876542117--852012796786753052000---332000223365000000000168
Q gi|254780270|r 550 RLFTHEAGVRSFERALMKIARKAVTKIVKN--SDTTVSINENNLQDYLGVPRY---KYGKIEGEDQVGIVTGLAWTEVGG 624 (820)
Q Consensus 550 ~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~--~~~~~~i~~~~l~~~lg~~~~---~~~~~~~~~~~G~v~GLa~t~~GG 624 (820)
..||-| | |.-=-.|+..+..+-.+-... ...+++|+.+++.+.++..|. ...+...+..||.|.||++..+=|
T Consensus 383 a~YTie-G-RkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~sRl~Py~~~~~~~~~EvG~vFGLGV~gy~G 460 (616)
T TIGR02903 383 ARYTIE-G-RKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQISRLSPYEKVKASDTYEVGHVFGLGVSGYLG 460 (616)
T ss_pred HHCCCC-C-HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEECCCCCCCC
T ss_conf 214713-1-12223465467676530455567777426618677767753045750112468886304687042121002
Q ss_pred EEEEEEEEEE----CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCC-CCCCCCCHHHH
Q ss_conf 0799999997----489972443256899999999999999998886299855742078147448888-47888730689
Q gi|254780270|r 625 EILTVEGVIM----PGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGA-TPKDGPSAGIA 699 (820)
Q Consensus 625 ~~l~IE~~~~----~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga-~pKDGPSAGi~ 699 (820)
++|.||+..+ ||+|.+.+.-..|.+.|.|+..|.|.+| .++..++.+|||||+|=.|+ + ||||||.|
T Consensus 461 S~lEIEa~aF~A~~~GkG~~RfNdTAGSMaKDSvFNAasviR------k~T~~D~~~yD~HVNViGGG~I--DGPSAG~A 532 (616)
T TIGR02903 461 SVLEIEAVAFEAKEKGKGTVRFNDTAGSMAKDSVFNAASVIR------KITGKDLKDYDIHVNVIGGGRI--DGPSAGAA 532 (616)
T ss_pred CEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH------HHCCCCCCCCCEEEEEECCCCC--CCCCHHHH
T ss_conf 333555044237789950588615655303577898899986------5304683416517888527701--75325799
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCH
Q ss_conf 99999999836888756106636850302500065689999999709969980367755077614887709799981939
Q gi|254780270|r 700 MATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFM 779 (820)
Q Consensus 700 i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~ 779 (820)
|+.||+||++++||||||||||||||+|+|.|||||.|||.||+|+||++|+||++|.|| +|..+ .+|++.+|+++
T Consensus 533 i~~~~~SA~~~~p~rQDvAiTGEiS~~G~ikpVGGi~EKIYGAk~~gi~~V~~P~~N~kd---vPqg~-~~I~v~~v~~i 608 (616)
T TIGR02903 533 ITLCIISAILDKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAKRAGIKTVVIPEDNLKD---VPQGL-KGIEVKAVKTI 608 (616)
T ss_pred HHHHHHHHHCCCCCEEEEEEEEEEEEECEEEECCCCCCCCHHHHHCCCCEEECCCCCCCC---CCCCC-CCCEEEEECCH
T ss_conf 999999987089830225651038860216512663333214553474354367300213---56678-87158970518
Q ss_pred HHHHHHHH
Q ss_conf 99888760
Q gi|254780270|r 780 GEVLKHAL 787 (820)
Q Consensus 780 ~evl~~al 787 (820)
+|++++++
T Consensus 609 EE~~~iv~ 616 (616)
T TIGR02903 609 EELLEIVF 616 (616)
T ss_pred HHHHHHHC
T ss_conf 98998609
No 7
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=100.00 E-value=0 Score=443.19 Aligned_cols=417 Identities=33% Similarity=0.477 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC-CCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC-
Q ss_conf 888999999987531102578999998765404158766-32210-688998776652011689999999999998424-
Q gi|254780270|r 286 EKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKS-KTKKN-LDFAIRILDQDHFGLEKVKERIIEYLAVQMRVI- 362 (820)
Q Consensus 286 ~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t-~~~~d-l~~a~~iLd~~hyGl~~vK~rile~lav~~~~~- 362 (820)
+.-+|||++|.+|-.=+ |+-|-.+.| +.++| |.- -| + ..+.|+-
T Consensus 34 kESkKEl~kLn~mR~I~-------------Lt~PL~Ek~RP~SF~EIiG-----------Qe---~------GI~ALKAA 80 (532)
T TIGR02902 34 KESKKELDKLNKMRAIR-------------LTEPLSEKTRPKSFDEIIG-----------QE---E------GIKALKAA 80 (532)
T ss_pred ECCHHHHHHHHCCCEEE-------------CCCCCCCCCCCCCCCCCCC-----------CH---H------HHHHHHHH
T ss_conf 04768998761114341-------------6788774667776332567-----------35---5------68999986
Q ss_pred --CCCCCEEEEECCCCCCHHHHHHHH-HHHHCC---------CEEEEE---------------CCCCCCHHHHCCCCCCC
Q ss_conf --446735998605656502799999-977088---------249986---------------18888888835632001
Q gi|254780270|r 363 --KNKGLILCFVGPPGVGKTSLAQSI-AKATGR---------QYVRMS---------------LGGVYDEADIRGHRRTY 415 (820)
Q Consensus 363 --~~~g~il~l~gppgvGKts~~~si-a~al~r---------~f~~is---------------lgg~~d~~~i~gh~~ty 415 (820)
-.+.+..-++||||||||--||=+ -.|-.- +||-|. +|.|||. =|
T Consensus 81 LCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~RFDERGIADPLIGSVHDP--------IY 152 (532)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTARFDERGIADPLIGSVHDP--------IY 152 (532)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--------CC
T ss_conf 0686896389878869617899999999865087537898866898505103602146666567761585--------33
Q ss_pred CCCCCHHHHHHHHHCCCCCE-----------EEEEECHHHHHHHCCCCHHHHHHHHC---------------CCCCCCCE
Q ss_conf 45671289999983278873-----------99993315542311771155665540---------------60016813
Q gi|254780270|r 416 IGSMPGRIIQSLKRAKRSNP-----------LLLLDEIDKMGSDLRGDPSAALLEVL---------------DPAQNSSF 469 (820)
Q Consensus 416 ~ga~pg~ii~~l~~~~~~np-----------v~~ldeidk~~~~~~gdp~~allevl---------------dp~qn~~f 469 (820)
=||-| |=.||---| |.++|||--+-.- -++-||-|| ||+==+.-
T Consensus 153 QGAGp------lG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~----~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI 222 (532)
T TIGR02902 153 QGAGP------LGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPV----QMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHI 222 (532)
T ss_pred CCCCC------CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH----HHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHH
T ss_conf 37654------578855758777632025865512124665824----35314113302220000123587778654278
Q ss_pred EEEEC-CCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 32010-35236442799993486554413117247998258786899989998608989986257813132289999999
Q gi|254780270|r 470 VDHYL-EVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDI 548 (820)
Q Consensus 470 ~d~y~-~~~~dls~v~fi~tan~~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~i 548 (820)
+|=|= ++|-|+= -.==+|-|--.||++||.|-=-|..-+.-.+|=.+|||+ .-+ +-.++++.+|++.
T Consensus 223 ~dIFqnGlPADFR-LiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~-----Aae-----KIg~~l~~~Al~~- 290 (532)
T TIGR02902 223 RDIFQNGLPADFR-LIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKN-----AAE-----KIGLNLEKEALDL- 290 (532)
T ss_pred HHHHCCCCCCCEE-CCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHH-----HHH-----HCCCCCCHHHHHH-
T ss_conf 9972067873401-213336987767834650522677168887899999876-----565-----3046547547999-
Q ss_pred HHCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCCC---CCCHHCCCCCCCCCEEEECCC
Q ss_conf 73177---410234788879999898765421178520127967867530520003---320002233650000000001
Q gi|254780270|r 549 IRLFT---HEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRYK---YGKIEGEDQVGIVTGLAWTEV 622 (820)
Q Consensus 549 i~~Yt---~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~~---~~~~~~~~~~G~v~GLa~t~~ 622 (820)
|..|| ||| | || +- .|--++-++. .-.|..++++...-.-.|+ ..++..+|+||.|||||++.-
T Consensus 291 I~~Ya~nGREA-v-N~-------~Q-LAaG~a~~E~-Rk~I~~~DieWV~~~G~y~Pk~~~k~~~~P~iG~VNGLaV~Gp 359 (532)
T TIGR02902 291 IAKYASNGREA-V-NL-------VQ-LAAGIALGEN-RKRILAEDIEWVIESGNYHPKPEIKLSSEPQIGLVNGLAVYGP 359 (532)
T ss_pred HHHHHCCCCHH-H-HH-------HH-HHHHHEECCC-CCEECHHHHHHHHHHCCCCCCCCEEECCCCCEEEEECCEECCC
T ss_conf 99874054067-7-89-------99-9731401288-7612054644555304787743402078885356655446067
Q ss_pred C-CEEEEEEEEEEC---C-CCCEEECCCH--------------HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEE
Q ss_conf 6-807999999974---8-9972443256--------------8999999999999999988862998557420781474
Q gi|254780270|r 623 G-GEILTVEGVIMP---G-KGEITITGNL--------------KEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVH 683 (820)
Q Consensus 623 G-G~~l~IE~~~~~---g-~g~l~lTG~l--------------g~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih 683 (820)
- |.+|.||+++.+ + .|++.+||=. ....|=|+..++|.+|+. +++++ ++|||||+
T Consensus 360 n~G~vl~~E~~a~~a~~~~qG~i~vtGIiEEE~~gg~~~~~~rKS~a~gSvENV~~Vl~~~---~~i~p---~~YDIHiN 433 (532)
T TIGR02902 360 NSGAVLEVEVTAERAENKRQGSINVTGIIEEEEIGGSGKSVRRKSSAKGSVENVLAVLKSV---FNINP---KDYDIHIN 433 (532)
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEEEECEECCCCCEEEHHHHHHHHHHHHHHHHHHH---HCCCC---CCCCEEEE
T ss_conf 7551302343776601148842899888710001798961520022443088999999988---47882---12647885
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHC
Q ss_conf 48888478887306899999999983688875610663685030250006568999999970996998036775507761
Q gi|254780270|r 684 VPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDI 763 (820)
Q Consensus 684 ~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~i 763 (820)
|| |.+|-|||||||||++|++||+++.||++.+||||||||+|.|.|||||..||-||+|||.|+||||++|.....
T Consensus 434 Fp-GG~PvDGPSAG~aiA~aiySA~~~~PIdn~vAmTGEISL~G~VKPVGGV~~Ki~AA~~AGak~ViIP~eNwqe~~-- 510 (532)
T TIGR02902 434 FP-GGIPVDGPSAGVAIAVAIYSAIKKVPIDNKVAMTGEISLNGLVKPVGGVVSKIEAAKKAGAKKVIIPYENWQESF-- 510 (532)
T ss_pred CC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCCEEECCCCHHHHHH--
T ss_conf 48-788422600899999999998717888772111333864010520178612689999749726534752078999--
Q ss_pred CHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 488770979998193999888760
Q gi|254780270|r 764 PENVKNGLEIIPVSFMGEVLKHAL 787 (820)
Q Consensus 764 p~~~~~~l~~~~v~~~~evl~~al 787 (820)
+. -++|++++|++++|||+.+|
T Consensus 511 -~~-~~~I~vipVk~~~E~l~~~l 532 (532)
T TIGR02902 511 -ES-ISGIKVIPVKNIDEVLEVAL 532 (532)
T ss_pred -HH-HCCEEEEECCCHHHHHHHHC
T ss_conf -85-52715863263899998839
No 8
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=100.00 E-value=0 Score=382.30 Aligned_cols=352 Identities=28% Similarity=0.418 Sum_probs=257.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEE--EE-------E---CCCCC
Q ss_conf 320014567128999998327887399993315542311771155665540600168133--20-------1---03523
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFV--DH-------Y---LEVEY 478 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~--d~-------y---~~~~~ 478 (820)
|.|-.-||.. +..-.|.++|||+-+.... ..+||.+| ||..|. ++ - -.+|.
T Consensus 214 h~Rv~aGAiH----------kA~gGvL~IDei~~L~~~~----q~~Ll~al---q~~k~~I~g~~e~SsgA~v~tepvP~ 276 (637)
T PRK13765 214 HERVEAGAIH----------KAHKGVLFIDEINTLRLES----QQSLLTAM---QEKKYPITGQSERSSGAMVRTEPVPC 276 (637)
T ss_pred EEEECCCHHH----------HCCCCEEEEEHHHHCCHHH----HHHHHHHH---HCCCEECCCCCCCCCCCCCCCCCCCE
T ss_conf 1000266121----------1358569984456479889----99999999---65915323688666776257898661
Q ss_pred CCCCEEEEEECCCC-CCCHHHCCCE----EEEEECCCCHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 64427999934865-5441311724----799825878689998999860--8989986257813132289999999731
Q gi|254780270|r 479 DLSDVMFIMTANTL-NIPLPLMDRM----EIIRIAGYTEEEKLQIAKNHL--VKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 479 dls~v~fi~tan~~-~i~~~l~drm----e~i~~~~y~~~ek~~i~~~~l--~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
|+ +++-.|+.+++ ++.++|++|. .-+.+.... ++--+..++|+ +-+..++.|.- -.|+.+|+..||++
T Consensus 277 Df-~lV~aGn~d~~~~m~palrsri~g~gyev~~~~~m-~dt~enr~k~arfiaqev~~dg~i---Phfdr~AVaeII~e 351 (637)
T PRK13765 277 DF-IMVAAGNLDAIENMHPALRSRIRGYGYEVYMNDTM-EDTPENRKKLVRFVAQEVKRDGKI---PHFDREAVEEIIRE 351 (637)
T ss_pred EE-EEEEECCHHHHHHCCHHHHHHHHCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHH
T ss_conf 36-99995372766643998886510477499823567-787889999999999999743888---99998999999999
Q ss_pred CCCCCHHHH---HH-HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCCC---------------CCCHHCCCCCC
Q ss_conf 774102347---88-879999898765421178520127967867530520003---------------32000223365
Q gi|254780270|r 552 FTHEAGVRS---FE-RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRYK---------------YGKIEGEDQVG 612 (820)
Q Consensus 552 Yt~EaGvR~---l~-r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~~---------------~~~~~~~~~~G 612 (820)
..|-||-++ |+ |.|+.++|.+.---..+. .-.|+.+++.+.+...+.. .-.....+++|
T Consensus 352 A~R~AG~k~kLTLrLReL~~LIReAgdiA~~eg--~~~Vta~hV~~A~~~~~~~e~qi~d~~~e~~k~~~l~~~~G~~VG 429 (637)
T PRK13765 352 ARRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG--ADLVTAEHVLEAKKISRSIEQQIADRYIERRKDYELFVTEGSEVG 429 (637)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEE
T ss_conf 997405456630528988749999889999759--996649999999998887999999999876536168853886678
Q ss_pred CCCEEEECC-CCCEEEEEEEEEE----CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCC
Q ss_conf 000000000-1680799999997----48997244325689999999999999999888629985574207814744888
Q gi|254780270|r 613 IVTGLAWTE-VGGEILTVEGVIM----PGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEG 687 (820)
Q Consensus 613 ~v~GLa~t~-~GG~~l~IE~~~~----~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~G 687 (820)
.|||||+.. .+|.+++|++..+ .|+|.++.||.+|++-++|+++..+|+|.++.+ + ..++|+||.|..-
T Consensus 430 qVNGLAV~G~~~G~~~pI~a~vt~~~~~g~g~vi~tg~lg~Ia~~aV~~vsa~lkk~~~~---~---~~~~~~~I~FeQs 503 (637)
T PRK13765 430 RVNGLAVMGGDSGIVLPIMAEVTPAQSKGEGKIIATGKLKEIAKEAVQNVSAIIKKFTGK---D---ISNYDIHIQFVGT 503 (637)
T ss_pred EEEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC---C---CCCCCEEEEEEEC
T ss_conf 986689965888860115789986556888608972410677898887899999998557---8---7666179998305
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHH
Q ss_conf 84788873068999999999836888756106636850302500065689999999709969980367755077614887
Q gi|254780270|r 688 ATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENV 767 (820)
Q Consensus 688 a~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~ 767 (820)
.-+-||+||++|++||++|++++.||+|++||||+++++|+|+|||||.|||.||.++|+++||||+.|..|+. |.++.
T Consensus 504 Y~gVeGDSAS~Ae~~AliSAL~~iPi~Q~~AvTGSl~q~G~VqpIGGVneKIEaa~~~G~k~ViIP~sN~~dv~-~~~~~ 582 (637)
T PRK13765 504 YEGVEGDSASVSIATAVISALENIPVDQSVAMTGSLSVRGDVLPVGGVTYKIEAAAEAGIKKVIIPKSNEKDVL-IEKEY 582 (637)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHCCCCEEEECCCHHHHHH-HHHHH
T ss_conf 78867860789999999998747984244357764236773454367079999999808866872400034343-20765
Q ss_pred HCCCEEEECCCHHHHHHHHHCCCCCC
Q ss_conf 70979998193999888760278876
Q gi|254780270|r 768 KNGLEIIPVSFMGEVLKHALLRMPDP 793 (820)
Q Consensus 768 ~~~l~~~~v~~~~evl~~al~~~~~~ 793 (820)
.+.++|+||+|++|||++||+..+..
T Consensus 583 ~~~i~iipv~~i~evl~~al~~~~~~ 608 (637)
T PRK13765 583 EDKIEIIPVSTISEVLEHALVGEPEK 608 (637)
T ss_pred CCCEEEEECCCHHHHHHHHHCCCCHH
T ss_conf 08469997373999999874488017
No 9
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=310.67 Aligned_cols=345 Identities=24% Similarity=0.324 Sum_probs=255.3
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHH--HCCCCCCCCEEEEEC---CCCCCCCCEEEEEECCCC-CCCHHHCCCEEE--
Q ss_conf 873999933155423117711556655--406001681332010---352364427999934865-544131172479--
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLE--VLDPAQNSSFVDHYL---EVEYDLSDVMFIMTANTL-NIPLPLMDRMEI-- 504 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~alle--vldp~qn~~f~d~y~---~~~~dls~v~fi~tan~~-~i~~~l~drme~-- 504 (820)
.-.|.++||++-++.-..-.---||++ -.+..||..+.--=+ .+|.|+ ++.-++...++ ++-+|+.||.+-
T Consensus 225 ngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~-klI~~Gn~~~l~~l~~~~~~r~~g~~ 303 (647)
T COG1067 225 NGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDL-KLILAGNREDLEDLHEPDRSRIEGFG 303 (647)
T ss_pred CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEECCHHHHHHHCCCCHHHHHHCC
T ss_conf 58479997566328398999999998244566576740248615788855654-89940889999765534777884055
Q ss_pred --EEECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH---HH-HHHHHHHHHHHHHHH
Q ss_conf --98258786-899989998608989986257813132289999999731774102347---88-879999898765421
Q gi|254780270|r 505 --IRIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS---FE-RALMKIARKAVTKIV 577 (820)
Q Consensus 505 --i~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~---l~-r~i~~i~r~~~~~~~ 577 (820)
.++..+.. .+.-....=-.+-+.+.+.| .-..++.+|+..||.+--|.||-|+ |. |.|+.++| .|-.++
T Consensus 304 y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~---~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~-~A~~ia 379 (647)
T COG1067 304 YEAEFEDTMPITDANRSKLVQFYVQELARDG---NIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVR-EAGDIA 379 (647)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHH-HHHHHH
T ss_conf 6899768889986899999999999998628---999888899999999999861656502148999999999-866888
Q ss_pred CCCCCEECCCHHHHHHHHCCCCCCC---------CC-------HHCCCCCCCCCEEEECCCCCE-E----EEEEEEEECC
Q ss_conf 1785201279678675305200033---------20-------002233650000000001680-7----9999999748
Q gi|254780270|r 578 KNSDTTVSINENNLQDYLGVPRYKY---------GK-------IEGEDQVGIVTGLAWTEVGGE-I----LTVEGVIMPG 636 (820)
Q Consensus 578 ~~~~~~~~i~~~~l~~~lg~~~~~~---------~~-------~~~~~~~G~v~GLa~t~~GG~-~----l~IE~~~~~g 636 (820)
..+..+ .|+.+++.+.+....... +. ....+.+|.||||++...+|. . --|-++...|
T Consensus 380 ~~~~~~-~I~ae~Ve~a~~~~~~~e~~l~e~~~~~~~~~~~li~t~G~~VG~ingLsV~~~~~~~~~g~p~~is~~~~~g 458 (647)
T COG1067 380 VSEGRK-LITAEDVEEALQKRELREGQLAERYIEDIKGGQILIETEGERVGQINGLSVIEVPGHHAFGEPARISCAVHKG 458 (647)
T ss_pred HCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEECC
T ss_conf 537866-4769999999987466789999998998755658986536220046015898517864356203787777517
Q ss_pred CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCC------CCCCCHHHHHHHHHHHHHHC
Q ss_conf 997244325689999999999999999888629985574207814744888847------88873068999999999836
Q gi|254780270|r 637 KGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATP------KDGPSAGIAMATAIVSIMTC 710 (820)
Q Consensus 637 ~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~p------KDGPSAGi~i~tal~S~~~~ 710 (820)
+|.+.-++..++.- +|++.+-+.++.. +..+ ..++|+||.|+.+.+= -|||||++|++|||+||+++
T Consensus 459 ~g~i~d~er~~~la-g~I~~k~~mI~~~---~~~~---~~~~d~~i~fs~s~~~eqsy~~vDGDSAS~A~~~aliSAl~~ 531 (647)
T COG1067 459 DGEIVDIERKAELA-GNIHNKGMMIKQA---FLMS---ILNYDIHIPFSASLVFEQSYGEVDGDSASLAEACALISALSK 531 (647)
T ss_pred CCCEEEHHHHHHHH-HHHHHHHHHHHHH---HCCC---CCCCCEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 88513213455555-6677889999998---5577---435855667766898875236666864889999999999854
Q ss_pred CCCCCCCEEEEEEEECCEEEEECCHHHHHH-------HHHHCCCCEEECCHHHHHHHHHCCHHHH-----CCCEEEECCC
Q ss_conf 888756106636850302500065689999-------9997099699803677550776148877-----0979998193
Q gi|254780270|r 711 IPVYKNVAMTGELTLRGRVLPIGGLKEKLL-------AALRAGVTKVLIPEENIKDLMDIPENVK-----NGLEIIPVSF 778 (820)
Q Consensus 711 ~~v~~~iAmTGEitl~G~VlpiGGi~eK~l-------aA~raGi~~viiP~~N~~d~~~ip~~~~-----~~l~~~~v~~ 778 (820)
.||+|++||||+|+++|+|+|||||.|||. ||.++|.+.||||+.|.+|+. +.+++. ..++|++|+|
T Consensus 532 ~Pv~Q~iAiTGsi~q~G~VqpVGGV~eKIEgf~~~c~~~~~~G~q~ViIP~~N~~~l~-l~~~v~~av~~g~f~I~~V~~ 610 (647)
T COG1067 532 IPVDQDIAITGSIDQFGEVQPVGGVNEKIEGFFRVCQAAGLTGEQGVIIPKANVKDLS-LSEDVVKAVKEGKFEIWPVET 610 (647)
T ss_pred CCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH-CCHHHHHHHHCCCEEEEEECC
T ss_conf 8875634678633367724544773053000488888876158854883313186640-238788775448469999572
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9998887602788
Q gi|254780270|r 779 MGEVLKHALLRMP 791 (820)
Q Consensus 779 ~~evl~~al~~~~ 791 (820)
++||++++|.+.+
T Consensus 611 i~eal~~~~~~~~ 623 (647)
T COG1067 611 IDEALELLLGKGE 623 (647)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999827874
No 10
>pfam02190 LON ATP-dependent protease La (LON) domain.
Probab=99.98 E-value=6.2e-30 Score=245.49 Aligned_cols=190 Identities=37% Similarity=0.613 Sum_probs=159.9
Q ss_pred EEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECCCCEEE
Q ss_conf 67566317825688714306429489999999999729849999736867778886560253148999997998898099
Q gi|254780270|r 27 IYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVK 106 (820)
Q Consensus 27 ~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~d~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klpDG~~~ 106 (820)
.||+|||+++|+|||+++||+||||||++|+++|+++++.++++... +..+++..+++|+|||+|+|.++.++|||+++
T Consensus 1 ~lPl~pl~~~vlfPg~~~pl~i~e~r~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~vG~~~~I~~~~~~~dg~~~ 79 (193)
T pfam02190 1 ELPLLPLRNVVLFPGMVLPLHVFEPRYIAAIEEALESDRPFFGLVLV-SQKDPPSPDDLYEVGTLARIIQIVKLPDGRLK 79 (193)
T ss_pred CCCEEECCCCEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCCHHHEEEEEEEEEEEECCCCEEE
T ss_conf 98889748900179966747989789999999998459978999984-67788884334227689999996506997299
Q ss_pred EEEEEEEEEEEEEEE-ECCCEEEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 999975479999887-0798199999980488888--4789999999999999999854557778887641268867899
Q gi|254780270|r 107 ILVEGSVRARIVEYI-EREDFLEAITQVLPDPTED--PVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLA 183 (820)
Q Consensus 107 ILVeGl~RvkI~ei~-~~~pyl~A~Ve~l~d~~~d--~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~iddp~~LA 183 (820)
|+++|.+||+|.++. +++||+.|+|++.++...+ ..+..++...+.+.+..+... ..+.+....+.+.++++.|+
T Consensus 80 v~v~G~~R~kI~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 157 (193)
T pfam02190 80 ILVEGLERFRILELEEQEEPYLVAEVEDLPEEESEELEEALEALVKELIELLKELLPL--LLPLELLLKIDNIEDPGRLA 157 (193)
T ss_pred EEEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCHHHHH
T ss_conf 9999899899988750578708999986577787545799999999999999997342--69888998776658999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998852358989999987432479999999999998
Q gi|254780270|r 184 DVIAANLSIKVAERQKILEAVSVKERLEMLLVFMES 219 (820)
Q Consensus 184 D~IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~lL~~ 219 (820)
|++|++++++.++||+|||+.|+.+|+++++++|++
T Consensus 158 ~~~a~~l~~~~~~kq~lLe~~~~~~Rl~~l~~~L~~ 193 (193)
T pfam02190 158 DLIASLLPLSPEEKQELLETLDVKERLEKLLELLKR 193 (193)
T ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 999983898999999988479999999999999678
No 11
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=211.44 Aligned_cols=198 Identities=21% Similarity=0.300 Sum_probs=159.0
Q ss_pred CCCEEEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCCCCCCCHHHEECCCEEEEEEEEEECC
Q ss_conf 7763675663178256887143064294899999999997298499997-368677788865602531489999979988
Q gi|254780270|r 23 ADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVT-QMNSNDENPIASSVYRIGTIVDIVQILRLP 101 (820)
Q Consensus 23 ~~~~~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~d~~I~vV~-qkD~~~e~p~~edLy~VGTlakI~qi~klp 101 (820)
..+..||+|||++.|+|||..+||+|||+||+.|+++|+++++.||++. +++.+...+....+..|||+|+|+++..++
T Consensus 7 ~~p~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~~~~~ 86 (221)
T COG2802 7 DLPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGREVGGGLPPELSDVGCLARITEFEELG 86 (221)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCEEEEEEEEEECC
T ss_conf 76523331346661036898772655269999999998734885147874256444678865011045047886735758
Q ss_pred CCEEEEEEEEEEEEEEEEEEE-CCCEEEEEEEEECCCCCCCHHHHHHHHH----HHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 980999999754799998870-7981999999804888884789999999----99999999985455777888764126
Q gi|254780270|r 102 DGTVKILVEGSVRARIVEYIE-REDFLEAITQVLPDPTEDPVELEALSRS----VIAEFSNYIKLNKKISPEVIGITSQI 176 (820)
Q Consensus 102 DG~~~ILVeGl~RvkI~ei~~-~~pyl~A~Ve~l~d~~~d~~eleAL~~~----L~e~f~eli~l~~~i~~E~~~~l~~i 176 (820)
||++.|.++|.+||||.++.- .+||.++.+++++|.+.......+.-+. +...++.|.+.+.. +.......-
T Consensus 87 DGr~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~a~evdr~~~~~l~~~~r~~~~~~~l---~~d~~~~~~ 163 (221)
T COG2802 87 DGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDGAEEVDRRLDALLMRAARAYLQRLEL---LADWESYER 163 (221)
T ss_pred CCCEEEEEEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHCCCCC
T ss_conf 98289999757889988776056750440204678876671068999999999999999987652231---333014665
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88678999988523589899999874324799999999999986556
Q gi|254780270|r 177 EGFSKLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISV 223 (820)
Q Consensus 177 ddp~~LAD~IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~lL~~EiEi 223 (820)
.++..+++.++..+|++..+||.+|+..|+..|++.+..+++.-...
T Consensus 164 ~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~~r~~~L~~~~e~l~a~ 210 (221)
T COG2802 164 ASNADLANRLYMLLPFDPAEKQALLEAPDLPTRAERLIRLLEQLLAR 210 (221)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 36799999999857888467888872665677999999999998887
No 12
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=99.93 E-value=1.9e-24 Score=204.03 Aligned_cols=383 Identities=27% Similarity=0.417 Sum_probs=260.3
Q ss_pred HHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCC--CC
Q ss_conf 7708824998618888888835632001456712899999832788739999331554231177115566554060--01
Q gi|254780270|r 388 KATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP--AQ 465 (820)
Q Consensus 388 ~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp--~q 465 (820)
..-.-||.-+.-||+...+ |.|.-.|+.. .....++++|||.-+.-..+-.-..||-+---| -|
T Consensus 204 d~~h~p~~c~~~~~lg~p~----h~~~~~g~~h----------~~~~g~l~~d~~~~~~~~~~~~~l~~~~~~~~p~~g~ 269 (662)
T TIGR00764 204 DVRHDPFGCFGSGGLGTPA----HERVEAGAIH----------RAHKGVLYIDEIGTLPLEVQQYLLTALQDKKFPITGQ 269 (662)
T ss_pred HHCCCCCCCCCCCCCCCCC----HHHHHHHHHH----------HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 1002520003788888750----1232322123----------3205505540113221135788887654113543567
Q ss_pred CCCEEEEEC---CCCCCCCCEEEEEECCC--C-CCCHHHCCCEEEEEECCCCH------HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 681332010---35236442799993486--5-54413117247998258786------899989998608989986257
Q gi|254780270|r 466 NSSFVDHYL---EVEYDLSDVMFIMTANT--L-NIPLPLMDRMEIIRIAGYTE------EEKLQIAKNHLVKKVLTEHAL 533 (820)
Q Consensus 466 n~~f~d~y~---~~~~dls~v~fi~tan~--~-~i~~~l~drme~i~~~~y~~------~ek~~i~~~~l~p~~~~~~~~ 533 (820)
|..-..-.+ -+|.| .+.+++.|- + .+.++|++|++-.-..-|.. -|...-.-+|+..+. ++.|
T Consensus 270 ~~~~~g~~~~~~p~pcd---f~l~~~g~~~~~~~~~~~l~~~~~g~gy~~~~~~~~~~~~~~~~~l~~f~~~~~-~~~g- 344 (662)
T TIGR00764 270 SENSSGAMVRTEPVPCD---FILVASGNLDDLEGLHPALRSRIRGYGYEVYLKDTMPDTPENRDKLVQFVAQEV-KKDG- 344 (662)
T ss_pred CCCCCCCEEECCCCCCC---EEEEECCCHHHHHHCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HHCC-
T ss_conf 76555641211566621---445514654565410045665430144168872667775024789999999987-6247-
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCHHHH---HH-HHHHHHHHHHHH--------HHHCCC--------------CCEECCC
Q ss_conf 813132289999999731774102347---88-879999898765--------421178--------------5201279
Q gi|254780270|r 534 KQEECCISDGVLLDIIRLFTHEAGVRS---FE-RALMKIARKAVT--------KIVKNS--------------DTTVSIN 587 (820)
Q Consensus 534 ~~~~~~~~~~~i~~ii~~Yt~EaGvR~---l~-r~i~~i~r~~~~--------~~~~~~--------------~~~~~i~ 587 (820)
.--.|+.+++..+++...+.+|-++ |+ |.++.++|...- +++.+. .....++
T Consensus 345 --~~~~~~~~~~~~~~~~~~~~~g~~~~l~l~l~~l~~~~~~~~d~~~g~d~~~~~g~~dd~g~~~p~~~~d~~~~~~~~ 422 (662)
T TIGR00764 345 --RLPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKGKDVEELLGNFDDKGEYHPETQKDSSGKEYVT 422 (662)
T ss_pred --CCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf --888642678999999988622764420102566633665310011144368873354444444763123334520001
Q ss_pred HHHH----------------HHHHCC-CCCCCCCHHCCCCCCCCCEEEECC-CCCEEEEEEEEEE----CCCCCEEECCC
Q ss_conf 6786----------------753052-000332000223365000000000-1680799999997----48997244325
Q gi|254780270|r 588 ENNL----------------QDYLGV-PRYKYGKIEGEDQVGIVTGLAWTE-VGGEILTVEGVIM----PGKGEITITGN 645 (820)
Q Consensus 588 ~~~l----------------~~~lg~-~~~~~~~~~~~~~~G~v~GLa~t~-~GG~~l~IE~~~~----~g~g~l~lTG~ 645 (820)
.+++ ..|+.. .+|..-...+.+.+|.++|||... .+|.++++++... +..|.+.+||.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~y~~~~p~~~~~~g~~~gl~~~g~~~g~~~~~~~~~~~~~~~~~g~~~~~g~ 502 (662)
T TIGR00764 423 AEHVLKAKKLGKTSLEKQLADNYIERKKRYKVFVPNEGGEVGRVNGLAVLGEAGGIGLPIKAEVAPAESKEEGRILLTGK 502 (662)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 56778877642234678888888764210203302677631023101233145552024555543320257772675042
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--CCCCHH--HHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6899999999999999998886--299855--742078147448888478887306899999999983688875610663
Q gi|254780270|r 646 LKEIMKESILAASSYVRSKATT--FGIIPS--AFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTG 721 (820)
Q Consensus 646 lg~vmkES~~~A~s~~k~~~~~--~~~~~~--~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTG 721 (820)
+|++.+|++..+-..++..... +-+..+ .+.++|+|+.|-..--.-||.||.+++++|++|++.+.|+++++||||
T Consensus 503 ~g~~~~~~~~~~~~~~~~~~~~~~~p~p~~d~d~~~~~~~~~f~~~y~~~~gd~~~~~~~~~~~~~~~~~p~~~~~~~~g 582 (662)
T TIGR00764 503 LGEIAKEAVLNVSALIKKYTGEKKLPLPKKDIDLSNYDIHIQFLQTYEGVEGDSASISVATAVISALEEIPVDQDVALTG 582 (662)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 24567788878888887641111367762224445421566430000234554025788999998875066422101002
Q ss_pred EEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHCCCCC
Q ss_conf 68503025000656899999997099699803677550776148877097999819399988876027887
Q gi|254780270|r 722 ELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALLRMPD 792 (820)
Q Consensus 722 Eitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al~~~~~ 792 (820)
.++++|.|+|+||+.+|+-||.++|++++++|+.|..|+. +..+....++++||++++|+++++|.....
T Consensus 583 ~l~~~g~~l~~gg~~~~~~~~~~~g~~~~~~p~~~~~d~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 652 (662)
T TIGR00764 583 SLSLRGEVLPVGGVTEKIEAAIEAGLKKVIIPKSNLGDVL-LDPETEGKIEIIPVETLDEVLEHVLDLDKK 652 (662)
T ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCEEECCCCCCCCEE-ECCCCCCCEEEECCHHHHHHHHHHHHCCCC
T ss_conf 2112554232176523567887505203430354432002-223234724663001233455544303654
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.90 E-value=1.5e-19 Score=166.91 Aligned_cols=262 Identities=23% Similarity=0.370 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-CCCCCC--EEEEECCCCCCHHH
Q ss_conf 89999987654041587663221-068899877665201168999999999999842-444673--59986056565027
Q gi|254780270|r 306 SVVRNYLDWLLGVPWDKKSKTKK-NLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV-IKNKGL--ILCFVGPPGVGKTS 381 (820)
Q Consensus 306 ~v~r~Yld~~~~lPW~~~t~~~~-dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~-~~~~g~--il~l~gppgvGKts 381 (820)
.-+..-+.-++.+|-++-+++.. -|...++.|.+..+|-+++-+.|.+-+-.-+.. .+.+-| ...|+||+|||||-
T Consensus 531 ~~ia~vvs~~tgIPv~~~~~~e~~~L~~Le~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTE 610 (852)
T TIGR03346 531 EEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 610 (852)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH
T ss_conf 99999999996886676665479999878888998971709999999999999971888899974589986788776899
Q ss_pred HHHHHHHHH---CCCEEEEECCCCCC---HHHHCCCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHH
Q ss_conf 999999770---88249986188888---8883563200145671-2899999832788739999331554231177115
Q gi|254780270|r 382 LAQSIAKAT---GRQYVRMSLGGVYD---EADIRGHRRTYIGSMP-GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPS 454 (820)
Q Consensus 382 ~~~sia~al---~r~f~~islgg~~d---~~~i~gh~~ty~ga~p-g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~ 454 (820)
+||.+|+.| ...+.||.|.--.+ .|-+.|--=-|||--. |....++++ ....|+|||||+|-.. |..
T Consensus 611 LAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr~--~PysVvL~DEIEKAh~----~V~ 684 (852)
T TIGR03346 611 LAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR--KPYSVVLFDEVEKAHP----DVF 684 (852)
T ss_pred HHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHHH--CCCEEEEECCHHHHCH----HHH
T ss_conf 9999999985585206984304430122477855899976776878742398981--9887998530543076----899
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC------------------------C-C-CCHHHCCCE-EEEEE
Q ss_conf 5665540600168133201035236442799993486------------------------5-5-441311724-79982
Q gi|254780270|r 455 AALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT------------------------L-N-IPLPLMDRM-EIIRI 507 (820)
Q Consensus 455 ~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~------------------------~-~-i~~~l~drm-e~i~~ 507 (820)
+.||.||| +-..+|.+ +-.+|++++++|+|.|- + . -+|.+++|+ ++|-+
T Consensus 685 ~~lLQilD---~G~ltD~~-Gr~vdF~NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F 760 (852)
T TIGR03346 685 NVLLQVLD---DGRLTDGQ-GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVF 760 (852)
T ss_pred HHHHHHHC---CCEEECCC-CCEEEEEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE
T ss_conf 99998823---67430799-988853556898615406599974114555799999999999965899899637868983
Q ss_pred CCCCHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCHHHHHHHH-HCCCCCCHHHHHHHHHHHH-HHHHHHHHHCCC
Q ss_conf 5878689998999860--89899862578131322899999997-3177410234788879999-898765421178
Q gi|254780270|r 508 AGYTEEEKLQIAKNHL--VKKVLTEHALKQEECCISDGVLLDII-RLFTHEAGVRSFERALMKI-ARKAVTKIVKNS 580 (820)
Q Consensus 508 ~~y~~~ek~~i~~~~l--~p~~~~~~~~~~~~~~~~~~~i~~ii-~~Yt~EaGvR~l~r~i~~i-~r~~~~~~~~~~ 580 (820)
.+.+.++-..|+..+| +-+.+.+.|+ .+.+++++..+|+ ..|..+.|.|.|+|.|..- ....+..++.+.
T Consensus 761 ~~L~~~~l~~I~~~~l~~l~~~l~~~~i---~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i~~~i~~~la~~iL~g~ 834 (852)
T TIGR03346 761 HPLGREQIARIVEIQLGRLRKRLAERKI---TLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGE 834 (852)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899999999999999999999997798---4998889999999848897747156999999998899999997488
No 14
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.88 E-value=7e-19 Score=161.78 Aligned_cols=434 Identities=18% Similarity=0.257 Sum_probs=253.9
Q ss_pred EECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC--------CCHHH---HHHHHHHH
Q ss_conf 70798199999980488888478999999999999999985455777888764126--------88678---99998852
Q gi|254780270|r 121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQI--------EGFSK---LADVIAAN 189 (820)
Q Consensus 121 ~~~~pyl~A~Ve~l~d~~~d~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~i--------ddp~~---LAD~IAs~ 189 (820)
...++.+.-+.+.+.-..++..+.-...+.++..++.+-. -.+.++.....-.+ --|.+ |.|-.|+.
T Consensus 332 iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~--V~i~d~Ai~aAv~LS~RYI~dR~LPDKAIDLlDeA~A~ 409 (852)
T TIGR03345 332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHG--VLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred HHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 6426889962475527999879999999987999855479--68708999999999872155455842789999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 358989999987432-479999999999998655--------66677775---433332223321122101111000010
Q gi|254780270|r 190 LSIKVAERQKILEAV-SVKERLEMLLVFMESEIS--------VLQVEKRI---RSRVKRQMEKTQREYYLHEQMKAIQKE 257 (820)
Q Consensus 190 L~l~~eeKQeLLE~~-Di~eRLe~Ll~lL~~EiE--------ilkLq~eI---~~kVk~kidk~QREyyLREQLKaIqkE 257 (820)
+.+....+..-|+.. .-...++.-...|.++.. ..++++++ +.+......+-|+|-=+-+++..++.+
T Consensus 410 ~~~~~~~~p~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 489 (852)
T TIGR03345 410 VALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAE 489 (852)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99860489568999999999999999998744522733299999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHCCCCCCCCCCCC-HHHHH
Q ss_conf 12466550467899985222478857888889999999875311025---789999987654041587663221-06889
Q gi|254780270|r 258 LDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAE---SSVVRNYLDWLLGVPWDKKSKTKK-NLDFA 333 (820)
Q Consensus 258 LGe~ed~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E---~~v~r~Yld~~~~lPW~~~t~~~~-dl~~a 333 (820)
+....+...+.... .........+++.+++...+..++ ..-+..-+.-.+.+|-++-+.+.. -+...
T Consensus 490 ~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~~~~~~~~~~~~V~~~~ia~vvs~~tgIPv~~l~~~e~~~l~~l 560 (852)
T TIGR03345 490 LEADADAPADDDAA---------LRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSL 560 (852)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99866514334577---------888999999999974045664435568999999999996898788617888888867
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCCE--EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCC---
Q ss_conf 987766520116899999999999984-24446735--9986056565027999999770---88249986188888---
Q gi|254780270|r 334 IRILDQDHFGLEKVKERIIEYLAVQMR-VIKNKGLI--LCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYD--- 404 (820)
Q Consensus 334 ~~iLd~~hyGl~~vK~rile~lav~~~-~~~~~g~i--l~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d--- 404 (820)
++.|.+..+|-+++-+.|.+-+-.... -.+.+.|| .+|.||.|||||-+||.+|+.| ...++||.+.--.+
T Consensus 561 e~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs 640 (852)
T TIGR03345 561 PDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT 640 (852)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHH
T ss_conf 99999997284999999999999987179999998568998789987789999999999719861147842243210436
Q ss_pred HHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 88835632001456712-89999983278873999933155423117711556655406001681332010352364427
Q gi|254780270|r 405 EADIRGHRRTYIGSMPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 405 ~~~i~gh~~ty~ga~pg-~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
.|-+.|----|||---| ....++++ ..+.|+|||||+|.. -|..+.||-||| .-..+|.+ +-.+|++++
T Consensus 641 vsrLiGaPPGYVGy~eGG~LTe~Vrr--~PysVvLfDEIEKAH----pdV~nilLQvlD---~G~LtD~~-Gr~vdF~Nt 710 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVRR--KPYSVVLLDEVEKAH----PDVLELFYQVFD---KGVMEDGE-GREIDFKNT 710 (852)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECHHHHCC----HHHHHHHHHHHC---CCEEECCC-CCEEECEEE
T ss_conf 87863899976674877721098880--998688861130028----899999998724---67775799-998845212
Q ss_pred EEEEECCCC-----------------------------C-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHH--HHHH-H
Q ss_conf 999934865-----------------------------5-44131172479982587868999899986089--8998-6
Q gi|254780270|r 484 MFIMTANTL-----------------------------N-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVK--KVLT-E 530 (820)
Q Consensus 484 ~fi~tan~~-----------------------------~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p--~~~~-~ 530 (820)
++|.|.|-= . .+|-++.|+++|-+.+.+.++-..|+..+|-. +.+. +
T Consensus 711 IIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~ 790 (852)
T TIGR03345 711 VILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKEN 790 (852)
T ss_pred EEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99975724479998640376555668999999999998347988864566897368999999999999999999999862
Q ss_pred HCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-HHHHHHHHC
Q ss_conf 25781313228999999973-1774102347888799998-987654211
Q gi|254780270|r 531 HALKQEECCISDGVLLDIIR-LFTHEAGVRSFERALMKIA-RKAVTKIVK 578 (820)
Q Consensus 531 ~~~~~~~~~~~~~~i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~~~~~~~~ 578 (820)
+|+ .+.++++++.+|.+ .|..+-|-|.|+|.|..-+ ...+..+++
T Consensus 791 ~~i---~l~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~i~~~la~~iL~ 837 (852)
T TIGR03345 791 HGA---ELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE 837 (852)
T ss_pred CCC---EEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 896---89988999999998289977686438999999988999999999
No 15
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.88 E-value=9.9e-19 Score=160.65 Aligned_cols=259 Identities=23% Similarity=0.348 Sum_probs=201.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCC--EEEEECCCCCCHHHHHH
Q ss_conf 999876540415876632210-6889987766520116899999999999984-2444673--59986056565027999
Q gi|254780270|r 309 RNYLDWLLGVPWDKKSKTKKN-LDFAIRILDQDHFGLEKVKERIIEYLAVQMR-VIKNKGL--ILCFVGPPGVGKTSLAQ 384 (820)
Q Consensus 309 r~Yld~~~~lPW~~~t~~~~d-l~~a~~iLd~~hyGl~~vK~rile~lav~~~-~~~~~g~--il~l~gppgvGKts~~~ 384 (820)
..-+.-.+.+|-++-+++..+ |...++.|.+..+|-+++-+.|..-+-.-.. -.+.+-| ..+|+||.|||||-+||
T Consensus 537 a~vvs~~TgIPv~~l~~~e~~~L~~le~~L~~rViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKTElAK 616 (857)
T PRK10865 537 AEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCK 616 (857)
T ss_pred HHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 99999996898302131058999999999987852809999999999999863899999973899986898788899999
Q ss_pred HHHHHH---CCCEEEEECCCCCC---HHHHCCCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHH
Q ss_conf 999770---88249986188888---8883563200145671-2899999832788739999331554231177115566
Q gi|254780270|r 385 SIAKAT---GRQYVRMSLGGVYD---EADIRGHRRTYIGSMP-GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAAL 457 (820)
Q Consensus 385 sia~al---~r~f~~islgg~~d---~~~i~gh~~ty~ga~p-g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~al 457 (820)
++|+.| ...++||.|.--.+ .|-+.|----|||--- |....++++- ...|+|||||+|. +-|..+.|
T Consensus 617 ~LA~~LF~~e~~liriDMSEy~E~hsVSrLiGaPPGYVGy~eGG~LTeaVRr~--PySVvLfDEIEKA----HpdV~nil 690 (857)
T PRK10865 617 ALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR--PYSVILLDEVEKA----HPDVFNIL 690 (857)
T ss_pred HHHHHHHCCHHHEEEECCHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHC--CCEEEEEHHHHHH----CHHHHHHH
T ss_conf 99999838933425625332113012767558998766757788110999819--8778863257663----85899999
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-------------------------C-CCHHHCCCE-EEEEECCC
Q ss_conf 55406001681332010352364427999934865-------------------------5-441311724-79982587
Q gi|254780270|r 458 LEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-------------------------N-IPLPLMDRM-EIIRIAGY 510 (820)
Q Consensus 458 levldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-------------------------~-i~~~l~drm-e~i~~~~y 510 (820)
|-||| +-..+|.. +-.+|+++++.|+|.|-= . -+|.++.|+ ++|-+.+.
T Consensus 691 LQvlD---~G~LtD~~-Gr~vdF~NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFlnRiD~iv~F~pL 766 (857)
T PRK10865 691 LQVLD---DGRLTDGQ-GRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPL 766 (857)
T ss_pred HHHHC---CCEEECCC-CCEEEEEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCC
T ss_conf 98703---68320799-988851334899646233699986506556688999999999864798888237848982789
Q ss_pred CHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHH-HCCCCCCHHHHHHHHHHHH-HHHHHHHHHCCC
Q ss_conf 86899989998608--9899862578131322899999997-3177410234788879999-898765421178
Q gi|254780270|r 511 TEEEKLQIAKNHLV--KKVLTEHALKQEECCISDGVLLDII-RLFTHEAGVRSFERALMKI-ARKAVTKIVKNS 580 (820)
Q Consensus 511 ~~~ek~~i~~~~l~--p~~~~~~~~~~~~~~~~~~~i~~ii-~~Yt~EaGvR~l~r~i~~i-~r~~~~~~~~~~ 580 (820)
+.++=..|+..+|- -+.+++.|+ .+.+++++..+|. ..|..+-|-|.|+|.|..- -...+..++.+.
T Consensus 767 ~~~~l~~Iv~~~l~~l~~rL~~~~i---~l~~~~~a~~~l~~~gyd~~~GARpl~r~I~~~i~~~ls~~il~g~ 837 (857)
T PRK10865 767 GEQHIASIAQIQLQRLYKRLEERGY---EIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837 (857)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999997798---4998889999999848897747137899999998899999997288
No 16
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.82 E-value=2.9e-17 Score=149.60 Aligned_cols=301 Identities=20% Similarity=0.291 Sum_probs=223.9
Q ss_pred HHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf 67899985-222478857888889999999875311----025789999987654041587663221-068899877665
Q gi|254780270|r 267 EISDFEAR-ISKIRLSKEAREKALSELQKLRQMNPL----SAESSVVRNYLDWLLGVPWDKKSKTKK-NLDFAIRILDQD 340 (820)
Q Consensus 267 Ei~el~~K-i~~~~lp~e~~~~~~kEl~rL~~m~~~----s~E~~v~r~Yld~~~~lPW~~~t~~~~-dl~~a~~iLd~~ 340 (820)
..-+|-.| |....+|+.+...+..--.|.+..+.. .-...-+..-+..++.+|-.+-+.+.. -|..-++.|.+.
T Consensus 380 ~av~Ls~rYi~dr~lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~t~ip~~~~~~~~~~~l~~le~~l~~~ 459 (758)
T PRK11034 380 AAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999976502688961999999999888751345663165899999999987503607677677999999899998778
Q ss_pred HHCHHHHHHHHHHHHHHHH--HC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC---HHHHCCCCCC
Q ss_conf 2011689999999999998--42-4446735998605656502799999977088249986188888---8883563200
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQM--RV-IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD---EADIRGHRRT 414 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~--~~-~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d---~~~i~gh~~t 414 (820)
.+|-+++=+.|.+-+-... ++ ++..--..+|+||.|||||-+||.+|+.|+..++||.+.--.+ .|-+.|----
T Consensus 460 viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsrLiGaPPG 539 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCC
T ss_conf 74549999999999999863888999970589997899877799999999998667721426653120147774489986
Q ss_pred CCCC-CCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-
Q ss_conf 1456-71289999983278873999933155423117711556655406001681332010352364427999934865-
Q gi|254780270|r 415 YIGS-MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL- 492 (820)
Q Consensus 415 y~ga-~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~- 492 (820)
|||- ..|....++++ ..+.|+|||||+|... |..+.||.||| +-..+|.. +-.+|++++++|.|.|-=
T Consensus 540 YVGy~eGG~Lte~Vr~--~PysVvL~DEIEKAhp----dV~nilLQvlD---~G~LtD~~-Gr~vdF~NtiIImTSN~Ga 609 (758)
T PRK11034 540 YVGFDQGGLLTDAVIK--HPHAVLLLDEIEKAHP----DVFNLLLQVMD---NGTLTDNN-GRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred CCCCCCCCCCCHHHHH--CCCEEEEEHHHHHHCH----HHHHHHHHHCC---CCCCCCCC-CCEEECEEEEEEEECCCCH
T ss_conf 6676777701287873--9877997336756398----99998873237---78301799-9988440019998256174
Q ss_pred -CC------------------------CHHHCCCE-EEEEECCCCHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCHHH
Q ss_conf -54------------------------41311724-79982587868999899986089--8998625781313228999
Q gi|254780270|r 493 -NI------------------------PLPLMDRM-EIIRIAGYTEEEKLQIAKNHLVK--KVLTEHALKQEECCISDGV 544 (820)
Q Consensus 493 -~i------------------------~~~l~drm-e~i~~~~y~~~ek~~i~~~~l~p--~~~~~~~~~~~~~~~~~~~ 544 (820)
.+ +|-+++|+ ++|-..+.+.++=..|+..+|-. +.+++.++ .+.+++++
T Consensus 610 ~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i---~l~~~~~a 686 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV---SLEVSQEA 686 (758)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHH
T ss_conf 878642147554203599999999547986772367478638899999999999999999999997898---59988999
Q ss_pred HHHHHH-CCCCCCHHHHHHHHHHHHH-HHHHHHHHCCC
Q ss_conf 999973-1774102347888799998-98765421178
Q gi|254780270|r 545 LLDIIR-LFTHEAGVRSFERALMKIA-RKAVTKIVKNS 580 (820)
Q Consensus 545 i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~~~~~~~~~~ 580 (820)
+.++.+ .|..+-|.|.|+|.|.+-+ ...+..++.++
T Consensus 687 ~~~l~~~gyd~~~GARpl~R~I~~~i~~~La~~il~g~ 724 (758)
T PRK11034 687 RDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGS 724 (758)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999848894537112889999998899999997298
No 17
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.82 E-value=1.5e-16 Score=144.12 Aligned_cols=260 Identities=21% Similarity=0.347 Sum_probs=200.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCC--EEEEECCCCCCHHHHH
Q ss_conf 9999876540415876632210-6889987766520116899999999999984-2444673--5998605656502799
Q gi|254780270|r 308 VRNYLDWLLGVPWDKKSKTKKN-LDFAIRILDQDHFGLEKVKERIIEYLAVQMR-VIKNKGL--ILCFVGPPGVGKTSLA 383 (820)
Q Consensus 308 ~r~Yld~~~~lPW~~~t~~~~d-l~~a~~iLd~~hyGl~~vK~rile~lav~~~-~~~~~g~--il~l~gppgvGKts~~ 383 (820)
+..-+.-.+.+|-++-+++..+ |...++.|.+..+|-+++-+.|..-+-.... -.+.+-| ...|+||.|||||-+|
T Consensus 477 I~~vvs~~tgiPv~~~~~~e~~~l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElA 556 (823)
T CHL00095 477 IAEIVSAWTGIPVNKLTKSESEKLIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELT 556 (823)
T ss_pred HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 99999998689847633458899987888787784076999999999999997089989997468998789988779999
Q ss_pred HHHHHHH---CCCEEEEECCCCCC---HHHHCCCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHH
Q ss_conf 9999770---88249986188888---8883563200145671-289999983278873999933155423117711556
Q gi|254780270|r 384 QSIAKAT---GRQYVRMSLGGVYD---EADIRGHRRTYIGSMP-GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAA 456 (820)
Q Consensus 384 ~sia~al---~r~f~~islgg~~d---~~~i~gh~~ty~ga~p-g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~a 456 (820)
|.+|+.| ...++||.+.--.+ .|-+-|----|||--- |....++++- ...|+|||||.|. +-|..+.
T Consensus 557 K~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~--PysVvLfDEIEKA----HpdV~ni 630 (823)
T CHL00095 557 KALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK--PYTVVLFDEIEKA----HPDIFNL 630 (823)
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC--CCEEEEECHHHHC----CHHHHHH
T ss_conf 999999747820258853510155420767458998766778788201988719--9869986213113----8899998
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C---------------------------------------CCH
Q ss_conf 655406001681332010352364427999934865-5---------------------------------------441
Q gi|254780270|r 457 LLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N---------------------------------------IPL 496 (820)
Q Consensus 457 llevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~---------------------------------------i~~ 496 (820)
||-||| .-..+|.. +-.+|++++++|+|.|-= . -+|
T Consensus 631 lLQvlD---dG~LtD~~-Gr~vdF~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~P 706 (823)
T CHL00095 631 LLQILD---DGRLTDSK-GRTIDFKNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRP 706 (823)
T ss_pred HHHHCC---CCCCCCCC-CCEEECEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 876516---88434899-99884310399971650558887413443433344543220235899999999999843798
Q ss_pred HHCCCE-EEEEECCCCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-HH
Q ss_conf 311724-7998258786899989998608--98998625781313228999999973-1774102347888799998-98
Q gi|254780270|r 497 PLMDRM-EIIRIAGYTEEEKLQIAKNHLV--KKVLTEHALKQEECCISDGVLLDIIR-LFTHEAGVRSFERALMKIA-RK 571 (820)
Q Consensus 497 ~l~drm-e~i~~~~y~~~ek~~i~~~~l~--p~~~~~~~~~~~~~~~~~~~i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~ 571 (820)
-++.|+ ++|-..+.+.++=..|+..+|- -+.+++.|+ .+.+++++..++.+ .|..+-|.|.|+|.|..-+ ..
T Consensus 707 EFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i---~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i~~~ 783 (823)
T CHL00095 707 EFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKRLNNQGI---QLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLLEDP 783 (823)
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7873278278618999999999999999999999996898---5998889999999958797768136889999998899
Q ss_pred HHHHHHCCC
Q ss_conf 765421178
Q gi|254780270|r 572 AVTKIVKNS 580 (820)
Q Consensus 572 ~~~~~~~~~ 580 (820)
.+..++.+.
T Consensus 784 ls~~il~g~ 792 (823)
T CHL00095 784 LAEEVLSFK 792 (823)
T ss_pred HHHHHHCCC
T ss_conf 999997488
No 18
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-15 Score=136.28 Aligned_cols=263 Identities=25% Similarity=0.354 Sum_probs=194.2
Q ss_pred HHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-----CCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 87654041587663-221068899877665201168999999999999842-----444673599860565650279999
Q gi|254780270|r 312 LDWLLGVPWDKKSK-TKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV-----IKNKGLILCFVGPPGVGKTSLAQS 385 (820)
Q Consensus 312 ld~~~~lPW~~~t~-~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~-----~~~~g~il~l~gppgvGKts~~~s 385 (820)
+.-.+.+|-++-++ +.-.+...++.|.+..+|-+.+=+.|..- ++.-. ++..-....|+||-|||||-+||.
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~~v~~a--IrraRaGL~dp~rPigsFlF~GPTGVGKTELAka 540 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDA--IRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKA 540 (786)
T ss_pred HHHHHCCCHHHHCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHH--HHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 99987898364133258899867999736501739999999999--9998569999998735788667886569999999
Q ss_pred HHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHH-HHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHH
Q ss_conf 997708---8249986188888---8883563200145671289-99998327887399993315542311771155665
Q gi|254780270|r 386 IAKATG---RQYVRMSLGGVYD---EADIRGHRRTYIGSMPGRI-IQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALL 458 (820)
Q Consensus 386 ia~al~---r~f~~islgg~~d---~~~i~gh~~ty~ga~pg~i-i~~l~~~~~~npv~~ldeidk~~~~~~gdp~~all 458 (820)
+|+.|. ..+.||.+.--.+ .|-+.|----|||---|-. -.+.++- ...|+|||||+|- +-|....||
T Consensus 541 LA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~--PySViLlDEIEKA----HpdV~nilL 614 (786)
T COG0542 541 LAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK--PYSVILLDEIEKA----HPDVFNLLL 614 (786)
T ss_pred HHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCC--CCEEEEECHHHHC----CHHHHHHHH
T ss_conf 9999659974445545687777877998727999872006554003766069--9868884126440----889999999
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C-C---------------------------CHHHCCCEE-EEEEC
Q ss_conf 5406001681332010352364427999934865-5-4---------------------------413117247-99825
Q gi|254780270|r 459 EVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N-I---------------------------PLPLMDRME-IIRIA 508 (820)
Q Consensus 459 evldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~-i---------------------------~~~l~drme-~i~~~ 508 (820)
.||| +-.-+|.. +-.+|++++++|+|.|-= + | ++.++.|+. ||...
T Consensus 615 QVlD---dGrLTD~~-Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~ 690 (786)
T COG0542 615 QVLD---DGRLTDGQ-GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFN 690 (786)
T ss_pred HHHC---CCCEECCC-CCEEECCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECC
T ss_conf 9846---78055489-9888430028998450265989753134321004678899999998538998985126178506
Q ss_pred CCCHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHHHHHHHHHCCCC---
Q ss_conf 87868999899986089--89986257813132289999999731-7741023478887999-98987654211785---
Q gi|254780270|r 509 GYTEEEKLQIAKNHLVK--KVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERALMK-IARKAVTKIVKNSD--- 581 (820)
Q Consensus 509 ~y~~~ek~~i~~~~l~p--~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i~~-i~r~~~~~~~~~~~--- 581 (820)
+.+.++-.+|+...|-. +.+.+.++ .+.+++++..++.+. |-.+-|-|.|+|.|.. |-...+..++.+..
T Consensus 691 ~L~~~~l~~Iv~~~L~~l~~~L~~~~i---~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~ 767 (786)
T COG0542 691 PLSKEVLERIVDLQLNRLAKRLAERGI---TLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDG 767 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 799899999999999999999986895---59988899999999646877673679999999998999999984665799
Q ss_pred CEECCCHH
Q ss_conf 20127967
Q gi|254780270|r 582 TTVSINEN 589 (820)
Q Consensus 582 ~~~~i~~~ 589 (820)
..+.|+.+
T Consensus 768 ~~v~v~~~ 775 (786)
T COG0542 768 GTVKVDVD 775 (786)
T ss_pred CEEEEEEC
T ss_conf 67999951
No 19
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.73 E-value=8.1e-17 Score=146.18 Aligned_cols=343 Identities=22% Similarity=0.294 Sum_probs=194.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC-CCEEEEEE
Q ss_conf 44467359986056565027999999770882499861888888883563200145671289999983278-87399993
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR-SNPLLLLD 440 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~-~npv~~ld 440 (820)
+=..|+.++|-|.||+||.+|.--+|..+....--+-+.|=...+.|+. +| .+.+. .+.++++.
T Consensus 86 GlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~~vLYvSGEES~~Qik~--------------RA-~RLg~~~~~l~l~~ 150 (454)
T PRK11823 86 GLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGGKVLYVSGEESLQQIKL--------------RA-ERLGLPSDNLYLLA 150 (454)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH--------------HH-HHHCCCCCCCEEEE
T ss_conf 7206648995079988899999999999855995799815015789999--------------99-97588888737885
Q ss_pred CHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 31554231177115566554060016813320103523644279999348655441311724799825878689998999
Q gi|254780270|r 441 EIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAK 520 (820)
Q Consensus 441 eidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~~~~y~~~ek~~i~~ 520 (820)
|-|=- -.-+.++-++|. | +=+|==+.+|--..++ .|. +..--.+.|
T Consensus 151 et~l~-------~Il~~i~~~~P~----~------lIIDSIQT~~~~~~~s--~pG--------------svsQVre~a- 196 (454)
T PRK11823 151 ETNLE-------DILATIEEEKPD----L------VVIDSIQTMYSPELES--APG--------------SVSQVRECA- 196 (454)
T ss_pred CCCHH-------HHHHHHHHHCCC----E------EEEECHHEEEECCCCC--CCC--------------CHHHHHHHH-
T ss_conf 36899-------999999860998----8------9994311154156677--899--------------789999999-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC---CHHHHHHHHHHHHH-----HHHHHHHHCC---------CCCE
Q ss_conf 86089899862578131322899999997317741---02347888799998-----9876542117---------8520
Q gi|254780270|r 521 NHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHE---AGVRSFERALMKIA-----RKAVTKIVKN---------SDTT 583 (820)
Q Consensus 521 ~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~E---aGvR~l~r~i~~i~-----r~~~~~~~~~---------~~~~ 583 (820)
+.+-+..|++++.- .+|-+-|.| ||-|-||-....++ |.....++.. +-.-
T Consensus 197 -~~L~~~AK~~~i~~-----------~lVGHVTKdG~iAGPkvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~EiGv 264 (454)
T PRK11823 197 -AELTRLAKQSGIAV-----------FLVGHVTKEGAIAGPRVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATNEIGV 264 (454)
T ss_pred -HHHHHHHHHCCCCE-----------EEEEEECCCCCCCCCHHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCEEEE
T ss_conf -99999997449828-----------999977267764661452220104687515766550245631246776660589
Q ss_pred ECCCHHHHHHHHCCCCC-CCCCHHCCCCCCCCCEEEECCCCCEEEEEE--EEEEC---CCCCEEECCCHHHHHHHHHHHH
Q ss_conf 12796786753052000-332000223365000000000168079999--99974---8997244325689999999999
Q gi|254780270|r 584 VSINENNLQDYLGVPRY-KYGKIEGEDQVGIVTGLAWTEVGGEILTVE--GVIMP---GKGEITITGNLKEIMKESILAA 657 (820)
Q Consensus 584 ~~i~~~~l~~~lg~~~~-~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE--~~~~~---g~g~l~lTG~lg~vmkES~~~A 657 (820)
+..+.+-|.+.-.|..+ -.++ ..+.+|.+..-.+ -|-..+.+| +.+.+ |..+=..+|- ++-+++
T Consensus 265 FeM~~~GL~~v~nPS~~Fls~~--~~~~~Gs~i~~~~--EGsRpllvEvQALv~~~~~~~PrR~~~G~------d~~Rl~ 334 (454)
T PRK11823 265 FEMTEKGLREVSNPSELFLSER--DENVPGSAVTVTM--EGTRPLLVEIQALVSPSSFGNPRRVAVGL------DQNRLA 334 (454)
T ss_pred EEECCCCCEECCCHHHHHHHCC--CCCCCCEEEEEEE--EECCCHHHHHHHHHCCCCCCCCEEEEECC------CHHHHH
T ss_conf 9861688456688779986268--8787750799888--50642401034461567788871578058------789999
Q ss_pred HHHHHHHH-HHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHH
Q ss_conf 99999988-86299855742078147448888478887306899999999983688875610663685030250006568
Q gi|254780270|r 658 SSYVRSKA-TTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLK 736 (820)
Q Consensus 658 ~s~~k~~~-~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~ 736 (820)
+-. +.+ ++.++. +.++|+++++. |...-+.|+|..|++.||+|++.++|+++++++.|||.|+|+|-||.++.
T Consensus 335 mll--AVlek~~~~~---l~~~DVyvnv~-GG~ki~epa~DLAva~Ai~SS~~~~~i~~~~~~~GEVGL~GEiR~V~~~~ 408 (454)
T PRK11823 335 MLL--AVLEKRLGLP---LSDQDVYVNVV-GGLKITEPAADLAVALAIASSLRDRPLPPDTVVFGEVGLSGEIRPVPRGE 408 (454)
T ss_pred HHH--HHHHHHHCCC---CCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCHH
T ss_conf 999--9999984986---22664799914-78415785477999999998704977898828999413670342689889
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHC
Q ss_conf 9999999709969980367755077614887709799981939998887602
Q gi|254780270|r 737 EKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALL 788 (820)
Q Consensus 737 eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al~ 788 (820)
..+-.|.|.|.+++|+|+.|.++ . .+++++++|+++.|+++..+.
T Consensus 409 ~Rl~EA~rlGf~~~ivP~~~~~~---~----~~~i~i~~v~~i~e~i~~l~~ 453 (454)
T PRK11823 409 ERLKEAAKLGFKRAIVPKANPKK---A----PEGIEVIGVKTLKEALELLFG 453 (454)
T ss_pred HHHHHHHHCCCCEEEECCCCCCC---C----CCCCEEEEECCHHHHHHHHHC
T ss_conf 99999998699889957877767---9----999799995979999999758
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.72 E-value=1.8e-14 Score=128.34 Aligned_cols=214 Identities=25% Similarity=0.325 Sum_probs=144.0
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCC------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCC
Q ss_conf 520116899999999999984244------46735998605656502799999977088249986188888888356320
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIK------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRR 413 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ 413 (820)
|.=||+..|+-+-+.- ..+... ....-+.|+||||+|||-+||.||...|.||.+++.|-+.+
T Consensus 229 ~vGGl~~lK~wl~~r~--~~f~~~a~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~--------- 297 (491)
T CHL00195 229 DIGGLDNLKDWLKKRS--TSFSKQAENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFG--------- 297 (491)
T ss_pred HCCCHHHHHHHHHHHH--HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH---------
T ss_conf 1468899999999988--98623366459999987999799998789999999866389469966799756---------
Q ss_pred CCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH--CCCC--HH----HHHHHHCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 0145671289999983278873-9999331554231--1771--15----566554060016813320103523644279
Q gi|254780270|r 414 TYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD--LRGD--PS----AALLEVLDPAQNSSFVDHYLEVEYDLSDVM 484 (820)
Q Consensus 414 ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~--~~gd--p~----~allevldp~qn~~f~d~y~~~~~dls~v~ 484 (820)
-|+|.-..++=+++..|..+.| |+++|||||.-+. ..|| .+ +.||.-++ + .-|.|+
T Consensus 298 ~~vGesE~~~r~~f~~A~~~aP~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~---e------------~~~~Vf 362 (491)
T CHL00195 298 GIVGESESRMRQMIQLAETISPCILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLS---E------------KKSPVF 362 (491)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC---C------------CCCCEE
T ss_conf 0067049999999999986198589974654542588888887232899999999864---6------------899769
Q ss_pred EEEECCCCC-CCHHHCC--CE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 999348655-4413117--24-7998258786899989998608989986257813132289999999731774102347
Q gi|254780270|r 485 FIMTANTLN-IPLPLMD--RM-EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS 560 (820)
Q Consensus 485 fi~tan~~~-i~~~l~d--rm-e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~ 560 (820)
+|+|+|..+ +|+.|+- |+ +++.++--+.+|..+|.+-||-.. ..+. . -.++-+.+-..-+.|| |
T Consensus 363 ViattN~~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~--~~~~--~--~~~d~~~la~~t~gfs---G--- 430 (491)
T CHL00195 363 VVATANNIDSLPLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRF--RPNS--W--QNYDIEILSQLTNKFS---G--- 430 (491)
T ss_pred EEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC--CCCC--C--CCCCHHHHHHHCCCCC---H---
T ss_conf 9995899755898770898777047648959899999999998544--7887--5--5469999997685988---8---
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHC
Q ss_conf 888799998987654211785201279678675305
Q gi|254780270|r 561 FERALMKIARKAVTKIVKNSDTTVSINENNLQDYLG 596 (820)
Q Consensus 561 l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg 596 (820)
-.|..+|+.++..-.... -.++.++|...+.
T Consensus 431 --AeIe~~v~~A~~~A~~~~---r~~~~~dl~~a~~ 461 (491)
T CHL00195 431 --AEIEQSIIEAMHHAFSEK---REFTTEDICLALK 461 (491)
T ss_pred --HHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHH
T ss_conf --999999999999998758---8665899999998
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.72 E-value=1.3e-15 Score=137.13 Aligned_cols=224 Identities=21% Similarity=0.345 Sum_probs=151.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 6520116899999999999984244-------467359986056565027999999770882499861888888883563
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
+|.=||+++|+.|-|.+-.-..+|+ ....-++|+||||+|||.+||.+|..++-+|.+++. ++|-.
T Consensus 132 ~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~------s~l~s- 204 (390)
T PRK03992 132 EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG------SELVQ- 204 (390)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEH------HHHHH-
T ss_conf 66149899999999999998659899997699999727868989997899999999874888799667------99752-
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHC-----CCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 200145671289999983278873-99993315542311-----7711--556655406001681332010352364427
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDL-----RGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~-----~gdp--~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
-|+|.-+-.|=+....|....| |+++||||-++..- .||- ...|+++|. |-..|. ..++|
T Consensus 205 --k~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~--emDG~~--------~~~~V 272 (390)
T PRK03992 205 --KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA--EMDGFD--------PRGNV 272 (390)
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH--HCCCCC--------CCCCE
T ss_conf --454179999999999999709908971432566335677888620889999999999--744877--------77882
Q ss_pred EEEEECCCCC-CCHHHCC--CE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 9999348655-4413117--24-799825878689998999860898998625781313228999999973177410234
Q gi|254780270|r 484 MFIMTANTLN-IPLPLMD--RM-EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVR 559 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l~d--rm-e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR 559 (820)
++|++.|-.+ ++++|+- |+ ..|+++--..++..+|.+-|+ +...+. .++. =+.+-..-+.|| |
T Consensus 273 ~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~-----~~~~l~-~dvd--l~~lA~~T~G~S---G-- 339 (390)
T PRK03992 273 KIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHT-----RKMNLA-DDVD--LEELAELTEGAS---G-- 339 (390)
T ss_pred EEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCCC-CCCC--HHHHHHHCCCCC---H--
T ss_conf 79960698100597775477652388708949999999999984-----799999-8889--999997687998---9--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 7888799998987654211785201279678675305200
Q gi|254780270|r 560 SFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 560 ~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
..|..+|+.+++.-+.... ..|+.+++.+.+.+-.
T Consensus 340 ---ADI~~lc~EA~m~Air~~r--~~i~~~Df~~Ai~kv~ 374 (390)
T PRK03992 340 ---ADLKAICTEAGMFAIRDDR--TEVTMEDFLKAIEKVM 374 (390)
T ss_pred ---HHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHH
T ss_conf ---9999999999999998589--8608999999999996
No 22
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=99.68 E-value=5.7e-16 Score=139.75 Aligned_cols=166 Identities=28% Similarity=0.367 Sum_probs=139.5
Q ss_pred CCEEEEEEEEEECCCCCEEE-CCCHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHH
Q ss_conf 68079999999748997244-3256899-999999999999998886299855742078147448888478887306899
Q gi|254780270|r 623 GGEILTVEGVIMPGKGEITI-TGNLKEI-MKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAM 700 (820)
Q Consensus 623 GG~~l~IE~~~~~g~g~l~l-TG~lg~v-mkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i 700 (820)
.|....|-+++.||.|.+.+ |+-+-.+ |+-||++|.-..- .-.| ..+.++|.-+.+-.++.---|||||-+|
T Consensus 48 ~gv~~~~~vtv~pG~G~v~v~t~P~t~~d~~~SArvAa~~A~---~~~G---vd~ssyd~~i~v~a~~pVVGgPSagg~m 121 (579)
T COG1750 48 VGVPINISVTVTPGDGRVYVATFPYTQIDMQGSARVAAGVAL---RLAG---VDMSSYDVYIAVEADSPVVGGPSAGGYM 121 (579)
T ss_pred CEEEEEEEEEECCCCCEEEEECCCCCHHCCCHHHHHHHHHHH---HHHC---CCCCCEEEEEEEECCCCEECCCCCCHHH
T ss_conf 302310266652898638863677740022134578888778---8627---8753225899994379743586510075
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHH-HCCCEEEECCCH
Q ss_conf 9999999836888756106636850302500065689999999709969980367755077614887-709799981939
Q gi|254780270|r 701 ATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENV-KNGLEIIPVSFM 779 (820)
Q Consensus 701 ~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~-~~~l~~~~v~~~ 779 (820)
|.|+++++++--.|.|++|||-|+=-|-+-||||++||+-||+++|+|.++||..++. ..|+-++- +.+++++-|.++
T Consensus 122 tva~~~~~~~~~~~~~v~mTG~I~PDgsigpVGGi~~K~~AA~~~g~kifLIP~Gq~~-~~d~~~Y~k~~gl~vieV~~~ 200 (579)
T COG1750 122 TVAIYAALMGWSIRKDVMMTGMINPDGSIGPVGGILEKLEAAAKAGAKIFLIPVGQRI-VVDLVEYGKSLGLKVIEVGTL 200 (579)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC-CCCHHHHHHHCCEEEEEEECH
T ss_conf 9999999957885467056523558874334544588899998579859996055444-530787776426479997002
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9988876027887655
Q gi|254780270|r 780 GEVLKHALLRMPDPLE 795 (820)
Q Consensus 780 ~evl~~al~~~~~~~~ 795 (820)
.+....--.+++++.+
T Consensus 201 ~~aiyy~tg~~~e~p~ 216 (579)
T COG1750 201 EDAAYYLTGPQIEPPE 216 (579)
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 2103454166678997
No 23
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.68 E-value=6.4e-15 Score=131.81 Aligned_cols=294 Identities=24% Similarity=0.364 Sum_probs=204.5
Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH-------------------HHHHHHHHHCCCCCCCCC-C-C
Q ss_conf 99985-222478857888889999999875311025789-------------------999987654041587663-2-2
Q gi|254780270|r 270 DFEAR-ISKIRLSKEAREKALSELQKLRQMNPLSAESSV-------------------VRNYLDWLLGVPWDKKSK-T-K 327 (820)
Q Consensus 270 el~~K-i~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v-------------------~r~Yld~~~~lPW~~~t~-~-~ 327 (820)
+|-.| |...-||+.|-.++.. .-=.-+|.+.+.+-.+ +-+=+--|+.+|--..+. | +
T Consensus 407 ~LS~ryI~DRfLPDKAIDviDE-aGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~ 485 (774)
T TIGR02639 407 ELSARYINDRFLPDKAIDVIDE-AGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDR 485 (774)
T ss_pred HHHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHH
T ss_conf 9988860257898543228899-999999712027764320112530004787854449999988718994154264479
Q ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC---CCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 10688998776652011689999999999998424---44673--59986056565027999999770882499861888
Q gi|254780270|r 328 KNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVI---KNKGL--ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 328 ~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~---~~~g~--il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
--|+.-++.|-+-.||-+.+=++|.+ ||+..+. +..-| -..|+||-|||||-+||..|++||-+|.|+.|.==
T Consensus 486 ~~L~~L~~~L~~kIfGQD~AI~~lv~--aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEY 563 (774)
T TIGR02639 486 EKLKNLEKELKAKIFGQDEAIEQLVS--AIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEY 563 (774)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHH
T ss_conf 88720447630131515899999999--9999874247788816888864798962578899999970820010465044
Q ss_pred C---CHHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 8---888835632001456712-899999832788739999331554231177115566554060016813320103523
Q gi|254780270|r 403 Y---DEADIRGHRRTYIGSMPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 403 ~---d~~~i~gh~~ty~ga~pg-~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~ 478 (820)
- -.|=+-|-===|||=--| ..-.|.+ +..|+|.|||||-|- |-|.++.||-|.| +.+-|||= +=-.
T Consensus 564 mEKHTVsRLIGsPPGYVGfEqGGLLT~Avr--K~P~cVLLLDEIEKA----HpDI~NILLQVMD---~AtLTDN~-GrKa 633 (774)
T TIGR02639 564 MEKHTVSRLIGSPPGYVGFEQGGLLTDAVR--KHPHCVLLLDEIEKA----HPDIYNILLQVMD---YATLTDNN-GRKA 633 (774)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHC--CCCCEEEHHHHHHHH----HHHHHHHHHHHHC---CCEEECCC-CCEE
T ss_conf 689999874168888513167772122331--288535423466663----1336667876633---54340588-8576
Q ss_pred CCCCEEEEEECCC-C-CCCHHH------------------------CCCE-EEEEECCCCHHHHHHHHHHHHHH--HHHH
Q ss_conf 6442799993486-5-544131------------------------1724-79982587868999899986089--8998
Q gi|254780270|r 479 DLSDVMFIMTANT-L-NIPLPL------------------------MDRM-EIIRIAGYTEEEKLQIAKNHLVK--KVLT 529 (820)
Q Consensus 479 dls~v~fi~tan~-~-~i~~~l------------------------~drm-e~i~~~~y~~~ek~~i~~~~l~p--~~~~ 529 (820)
|+-+|+-|-|.|- . ++..|. +.|+ .||...+-+.+==..|+++.|=- .+|.
T Consensus 634 DFRNVILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~ 713 (774)
T TIGR02639 634 DFRNVILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLN 713 (774)
T ss_pred EECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 31136888403700102367764425554123348889731587420133464416998899999999999999997553
Q ss_pred HHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-HHHHHHHHCC
Q ss_conf 6257813132289999999731-774102347888799998-9876542117
Q gi|254780270|r 530 EHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERALMKIA-RKAVTKIVKN 579 (820)
Q Consensus 530 ~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i~~i~-r~~~~~~~~~ 579 (820)
+ +.-.+.++++|+.+|.++ |+.|=|.|.|.|.|..=+ -..+.+++=|
T Consensus 714 e---K~v~l~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~~L~dEILFG 762 (774)
T TIGR02639 714 E---KNVELELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFG 762 (774)
T ss_pred H---CCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0---653787647899999863678110554489998874125765442057
No 24
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.67 E-value=2.8e-16 Score=142.05 Aligned_cols=119 Identities=31% Similarity=0.550 Sum_probs=94.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHH
Q ss_conf 9986056565027999999770882499861888888883563200145671289999983278873-999933155423
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGS 447 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~ 447 (820)
++|+||||+|||++|++||+.++++|++++...+.+ .|+|.++.+|-+.+..++..+| |+++||+|.+..
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~---------~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~ 71 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS---------KYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAG 71 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC---------CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHC
T ss_conf 987899999999999999999789853324201222---------33450688899999999974991898311677751
Q ss_pred HC-CC------CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHC-CCEEE-EEEC
Q ss_conf 11-77------115566554060016813320103523644279999348655-441311-72479-9825
Q gi|254780270|r 448 DL-RG------DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLM-DRMEI-IRIA 508 (820)
Q Consensus 448 ~~-~g------dp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~-drme~-i~~~ 508 (820)
.- .+ ...++||..+|--++ +-++|+||+|.|+.+ |+++++ .|++. |+++
T Consensus 72 ~~~~~~~~~~~~~~~~ll~~ld~~~~------------~~~~v~~I~tTN~~~~ld~al~r~Rfd~~i~~p 130 (131)
T pfam00004 72 SRGSGGDSESRRVVNQLLTELDGFTS------------SLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130 (131)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCC------------CCCCEEEEEECCCHHHCCHHHHCCCCEEEEEEC
T ss_conf 67888887513268789999850224------------688769999759904499779628332899806
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.67 E-value=4.7e-15 Score=132.79 Aligned_cols=193 Identities=25% Similarity=0.324 Sum_probs=132.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH-CCCCCEEEEEEC
Q ss_conf 4467359986056565027999999770882499861888888883563200145671289999983-278873999933
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKR-AKRSNPLLLLDE 441 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~-~~~~npv~~lde 441 (820)
+.+-+-+.|.|||||||||+|+.||+.++.+|+.+|-.- .-..+||- |++.-+. ..-..+|+++||
T Consensus 34 ~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~-~gv~dir~------------ii~~a~~~~~~~~tilfiDE 100 (417)
T PRK13342 34 AGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVT-SGVKDLRE------------VIEEAKQSRLGRRTILFIDE 100 (417)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHH------------HHHHHHHHHCCCCEEEEEEC
T ss_conf 699975998896999899999999998689889961410-38899999------------99998863148965999978
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEE--ECCCC-CCCHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 1554231177115566554060016813320103523644279999--34865-54413117247998258786899989
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIM--TANTL-NIPLPLMDRMEIIRIAGYTEEEKLQI 518 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~--tan~~-~i~~~l~drme~i~~~~y~~~ek~~i 518 (820)
|+-++.+-+ .+||..+.. ..+.||+ |-|.. .|.+||+.|+.++++...+.++=..|
T Consensus 101 IHRfnK~QQ----D~LLp~vE~-----------------g~iiLIgATTENP~f~in~aLlSRc~vf~l~~L~~~di~~i 159 (417)
T PRK13342 101 IHRFNKAQQ----DALLPHVED-----------------GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDLEQL 159 (417)
T ss_pred HHHCCHHHH----HHHHHHHHC-----------------CCEEEEEECCCCCHHHCCHHHHHHHHHEECCCCCHHHHHHH
T ss_conf 200588999----999875112-----------------65699974157922534898985657002058999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 99860898998625781313228999999973177410234788879999898765421178520127967867530520
Q gi|254780270|r 519 AKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 519 ~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
.++-+- .+.|+ ...+.++++++..|++.-.= -.|.+=-.|+.+ .........||.+.+.+.++..
T Consensus 160 L~ral~----~e~~~-~~~i~i~~~al~~i~~~s~G--DaR~aLN~LE~a--------~~~~~~~~~i~~~~~~~~~~~~ 224 (417)
T PRK13342 160 LKRALE----DERGL-GRKLELDDEALDALARLADG--DARRALNLLELA--------AAAAAGGEVITLELLEEALQRR 224 (417)
T ss_pred HHHHHH----HHHCC-CCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHH--------HHCCCCCCCCCHHHHHHHHHHC
T ss_conf 999998----77433-78877699999999981498--599999999999--------8525899734899999998441
Q ss_pred CCCCCC
Q ss_conf 003320
Q gi|254780270|r 599 RYKYGK 604 (820)
Q Consensus 599 ~~~~~~ 604 (820)
.+.+++
T Consensus 225 ~~~yDk 230 (417)
T PRK13342 225 AARYDK 230 (417)
T ss_pred CCCCCC
T ss_conf 035777
No 26
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.66 E-value=6.9e-16 Score=139.13 Aligned_cols=115 Identities=29% Similarity=0.543 Sum_probs=100.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCH---HHHCCCCCCCCCCC-CHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5998605656502799999977088---2499861888888---88356320014567-128999998327887399993
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDE---ADIRGHRRTYIGSM-PGRIIQSLKRAKRSNPLLLLD 440 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~---~~i~gh~~ty~ga~-pg~ii~~l~~~~~~npv~~ld 440 (820)
.+.|+||+|||||.+||.+|+.|+. +|+++.++-..++ +.+-|+...|+|+- .|.+.+++++ ..+.|+|||
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~--~p~~VillD 82 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRR--KPYSIVLID 82 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH--CCCCEEEEH
T ss_conf 999889899899999999999967985344885575654256999870589987262426507899983--898489865
Q ss_pred CHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 3155423117711556655406001681332010352364427999934865
Q gi|254780270|r 441 EIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL 492 (820)
Q Consensus 441 eidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~ 492 (820)
||||... +...+||.+|| +..++|++ +..+|+++++||||.|--
T Consensus 83 EIeKa~~----~V~~~LL~ild---~g~~~d~~-g~~v~~~n~i~i~Tsn~g 126 (168)
T pfam07724 83 EIEKAHP----GVQNDLLQILE---GGTLTDKQ-GRKVDFRNTLFIMTGNFG 126 (168)
T ss_pred HHHHHCH----HHHHHHHHHCC---CCCEECCC-CCEEECCCEEEEECCCCC
T ss_conf 7766589----99999998705---87063699-967844647999768737
No 27
>PRK04195 replication factor C large subunit; Provisional
Probab=99.64 E-value=4.1e-14 Score=125.69 Aligned_cols=189 Identities=25% Similarity=0.382 Sum_probs=129.8
Q ss_pred CCCC-CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 4158-7663221068899877665201168999999999999842-4446735998605656502799999977088249
Q gi|254780270|r 318 VPWD-KKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV-IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 318 lPW~-~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~-~~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
+||- ||.+.++ .|.-|-+++++.+.+++ ..|. +..+.+.+.|+|||||||||+|+.||+.+|-..+
T Consensus 2 ~~WveKYRPk~~----------~divg~~~~v~~l~~Wl--~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~vi 69 (403)
T PRK04195 2 MPWVEKYRPKSL----------SDVVGNEKAKKQLREWI--ESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWEVI 69 (403)
T ss_pred CCCCCCCCCCCH----------HHHHCCHHHHHHHHHHH--HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 986402189989----------99858899999999999--998739965746998893998799999999998499859
Q ss_pred EEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC----CCCCEEEEEECHHHHHHHCCCCH--HHHHHHHCCCCCCCCE
Q ss_conf 98618888888835632001456712899999832----78873999933155423117711--5566554060016813
Q gi|254780270|r 396 RMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA----KRSNPLLLLDEIDKMGSDLRGDP--SAALLEVLDPAQNSSF 469 (820)
Q Consensus 396 ~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~----~~~npv~~ldeidk~~~~~~gdp--~~allevldp~qn~~f 469 (820)
.+.-...|.-..|+. ++...... +...-+++|||+|-|+.. +|. ..||++++..
T Consensus 70 ElNASD~R~~~~I~~------------~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~--~d~gg~~al~~~ik~------ 129 (403)
T PRK04195 70 ELNASDQRTKDVIER------------VAGEASTSGSLFGAKRKLILLDEVDGIHGN--ADRGGVRAILEIIKK------ 129 (403)
T ss_pred EECCCCCCCHHHHHH------------HHHHHHHCCCCCCCCCEEEEEECCCCCCCH--HHHHHHHHHHHHHHC------
T ss_conf 977101147899999------------999876068877887349996343445724--447999999999854------
Q ss_pred EEEECCCCCCCCCEEEEEECCCC-C-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 32010352364427999934865-5-441311724799825878689998999860898998625781313228999999
Q gi|254780270|r 470 VDHYLEVEYDLSDVMFIMTANTL-N-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLD 547 (820)
Q Consensus 470 ~d~y~~~~~dls~v~fi~tan~~-~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ 547 (820)
++.-|||++|+. + ++.+|++|-.+|++...+..+-.... -++++ .+.+.+++++|..
T Consensus 130 -----------s~~PiIli~Nd~~~~~~~~lrs~c~~i~F~~~~~~~I~~~L-----~~I~~-----~Egi~i~~~aL~~ 188 (403)
T PRK04195 130 -----------AKNPIILTANDPYDPSLRPLRNACLMIEFKRLSKRSIVPVL-----KRICR-----KEGIECEEEALRE 188 (403)
T ss_pred -----------CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH-----HHHHH-----HCCCCCCHHHHHH
T ss_conf -----------88708998268455671779976612217994999999999-----99999-----7699999999999
Q ss_pred HHHCCCCCCHHHHH
Q ss_conf 97317741023478
Q gi|254780270|r 548 IIRLFTHEAGVRSF 561 (820)
Q Consensus 548 ii~~Yt~EaGvR~l 561 (820)
|++. -..-+|..
T Consensus 189 Ia~~--s~GDlR~a 200 (403)
T PRK04195 189 IAER--SGGDLRSA 200 (403)
T ss_pred HHHH--CCCHHHHH
T ss_conf 9998--79739999
No 28
>TIGR02653 Lon_rel_chp conserved hypothetical protein; InterPro: IPR013473 This entry describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to IPR008269 from INTERPRO, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of Escherichia coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]..
Probab=99.64 E-value=3.5e-15 Score=133.75 Aligned_cols=180 Identities=24% Similarity=0.370 Sum_probs=158.6
Q ss_pred CCCCCCCCCEEEECCCC-CEEEEEEEEEECCCCCEEECC-CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEC
Q ss_conf 22336500000000016-807999999974899724432-5689999999999999999888629985574207814744
Q gi|254780270|r 607 GEDQVGIVTGLAWTEVG-GEILTVEGVIMPGKGEITITG-NLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHV 684 (820)
Q Consensus 607 ~~~~~G~v~GLa~t~~G-G~~l~IE~~~~~g~g~l~lTG-~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~ 684 (820)
.-++||+|.--..|+.| =++--+|+-++.|+|++.+.| =--.-||||+..|..|.|+|........ .|++.|-|+|+
T Consensus 493 g~~~pG~vy~v~~~~~G~~GlYrfEvqv~AG~GK~~~sG~Gs~t~~KEsi~~aF~yfkgn~~~~s~~~-~f~~~dyhlhv 571 (677)
T TIGR02653 493 GLLKPGVVYAVTQNESGKVGLYRFEVQVVAGSGKHKVSGLGSNTTAKESIRVAFDYFKGNLKRISASA-KFSEKDYHLHV 571 (677)
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE-EEECCCEEEEE
T ss_conf 78888728998655888563689888887347612232125663101678876677531342231467-87064007998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCC
Q ss_conf 88884788873068999999999836888756106636850302500065689999999709969980367755077614
Q gi|254780270|r 685 PEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIP 764 (820)
Q Consensus 685 p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip 764 (820)
-+=-+--=|-.+|+|...||+|++.+++|-...++=|++||.|.|-||--|-+-+=-|-.+|-|+|+||=+|+.|+.++|
T Consensus 572 ~dL~~~g~s~~~~laa~Ial~S~~~~~~vqeqmviLG~mtigG~i~~v~~La~~LQ~a~d~GAKr~liP~~sa~~i~~Vp 651 (677)
T TIGR02653 572 VDLHNTGVSTEASLAALIALCSALLKRPVQEQMVILGSMTIGGVIKPVQDLAGSLQLAMDSGAKRVLIPLSSARDILTVP 651 (677)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC
T ss_conf 71317885556789999999999861688875189863132540043555468899998618754740300244546378
Q ss_pred HHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 88770979998193999888760
Q gi|254780270|r 765 ENVKNGLEIIPVSFMGEVLKHAL 787 (820)
Q Consensus 765 ~~~~~~l~~~~v~~~~evl~~al 787 (820)
.++-.+..+.|=+.=-++.--||
T Consensus 652 ~elf~Kfq~sFy~dP~dAv~Kal 674 (677)
T TIGR02653 652 AELFSKFQISFYSDPVDAVYKAL 674 (677)
T ss_pred HHHEECCCEEECCCHHHHHHHHH
T ss_conf 52602243034378389999972
No 29
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=99.63 E-value=1.5e-13 Score=121.36 Aligned_cols=262 Identities=23% Similarity=0.350 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC------C----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 068899877665201168999999999999842------4----446735998605656502799999977088249986
Q gi|254780270|r 329 NLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV------I----KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMS 398 (820)
Q Consensus 329 dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~------~----~~~g~il~l~gppgvGKts~~~sia~al~r~f~~is 398 (820)
--+...+-||+..-|-+++|.-+- +|++..- . .....=|+++||-|||||-||+-+|+.++-||+.+-
T Consensus 5 tP~eIv~~LD~yIIGQ~~AKkavA--VAlrNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkve 82 (442)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVA--IALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (442)
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 989999985360108277667877--788777875316622123346431688788886678999999998489858752
Q ss_pred ------CCCCCCH--HHHC-------------------------------------------------CCCCC-------
Q ss_conf ------1888888--8835-------------------------------------------------63200-------
Q gi|254780270|r 399 ------LGGVYDE--ADIR-------------------------------------------------GHRRT------- 414 (820)
Q Consensus 399 ------lgg~~d~--~~i~-------------------------------------------------gh~~t------- 414 (820)
.|=|.+. +-|| +...|
T Consensus 83 ATk~TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~~ 162 (442)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRKK 162 (442)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 13100034356437889999999999999999999999999999999999985586555555545420236789999999
Q ss_pred ---------------------------------------CCCCCCHH----------------------------HH-HH
Q ss_conf ---------------------------------------14567128----------------------------99-99
Q gi|254780270|r 415 ---------------------------------------YIGSMPGR----------------------------II-QS 426 (820)
Q Consensus 415 ---------------------------------------y~ga~pg~----------------------------ii-~~ 426 (820)
+-|++|++ +. .|
T Consensus 163 Lr~G~Ldd~~IeIev~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~kkr~~tVkeA~~iL~~eEa~klid~d~v~~eA 242 (442)
T PRK05201 163 LREGELDDKEIEIEVADAPGVEIMGPPGMEEMGNQLQDMFGNLGPKKKKKRKLKVKEARKLLIEEEAAKLVDQEEIKQEA 242 (442)
T ss_pred HHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86588665557886157777777788751556667998764027888740464699999999999998624889999999
Q ss_pred HHHCCCCCEEEEEECHHHHHHH---CCCCHHH-----HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC--C---CC
Q ss_conf 9832788739999331554231---1771155-----66554060016813320103523644279999348--6---55
Q gi|254780270|r 427 LKRAKRSNPLLLLDEIDKMGSD---LRGDPSA-----ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN--T---LN 493 (820)
Q Consensus 427 l~~~~~~npv~~ldeidk~~~~---~~gdp~~-----allevldp~qn~~f~d~y~~~~~dls~v~fi~tan--~---~~ 493 (820)
+.+|. .+.++++|||||+.+. ..+|++. +||-++.-+.=+ -.|= ++|-.++||||+-- . .+
T Consensus 243 i~~aE-q~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~---tK~G--~V~TdhILFIasGAFh~sKPSD 316 (442)
T PRK05201 243 IERVE-QNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVS---TKYG--MVKTDHILFIASGAFHVAKPSD 316 (442)
T ss_pred HHHHH-HCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC---CCCC--CCCCCEEEEECCCCCCCCCCCH
T ss_conf 99887-6170451146565303578898977330788878875388555---6777--6025503455045001478202
Q ss_pred -CCHHHCCCEEE-EEECCCCHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC------CCCCHHHHHH
Q ss_conf -44131172479-982587868999899---986089899862578131322899999997317------7410234788
Q gi|254780270|r 494 -IPLPLMDRMEI-IRIAGYTEEEKLQIA---KNHLVKKVLTEHALKQEECCISDGVLLDIIRLF------THEAGVRSFE 562 (820)
Q Consensus 494 -i~~~l~drme~-i~~~~y~~~ek~~i~---~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y------t~EaGvR~l~ 562 (820)
||. |.-|+-| .++.+.+.++=+.|- ++-|+.+..+-.....-++.|+++|++.|.+.- |.--|-|.|.
T Consensus 317 LIPE-l~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~ 395 (442)
T PRK05201 317 LIPE-LQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLH 395 (442)
T ss_pred HHHH-HCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 2498-717550588824499999999967861578999999986249679984799999999999851447667737889
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 8799998987654211785201279678675305200
Q gi|254780270|r 563 RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
-.+++++..+..+.-....+.++||.+.+.+-|+.-.
T Consensus 396 tI~E~vl~d~~Fe~p~~~~~~v~I~~~~V~~~l~~i~ 432 (442)
T PRK05201 396 TVMEKLLEDISFEAPDRSGEKITIDAAYVDEKLGDLV 432 (442)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 9999998986146889999779988999999998876
No 30
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.62 E-value=3.7e-13 Score=118.48 Aligned_cols=254 Identities=24% Similarity=0.325 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC------C----C---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 68899877665201168999999999999842------4----4---467359986056565027999999770882499
Q gi|254780270|r 330 LDFAIRILDQDHFGLEKVKERIIEYLAVQMRV------I----K---NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVR 396 (820)
Q Consensus 330 l~~a~~iLd~~hyGl~~vK~rile~lav~~~~------~----~---~~g~il~l~gppgvGKts~~~sia~al~r~f~~ 396 (820)
-+....-||+-.-|-+++|.-+- .||+..- . + .|.. ++|+||-|+|||-||+.+|+.|+-||+.
T Consensus 63 P~eI~~~LD~yVIGQ~~AKk~ls--VAvyNHykRi~~~~~~~~~vei~KsN-ILliGPTG~GKTlla~tLAk~l~vPF~i 139 (411)
T PRK05342 63 PKEIKAHLDQYVIGQERAKKVLS--VAVYNHYKRLRQNGSKSDDVELQKSN-ILLIGPTGSGKTLLAQTLARILNVPFAI 139 (411)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 79999986214028488889999--99999999986021335665213453-8998999977889999999986999899
Q ss_pred EECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC------CEEEEEECHHHHHHH--C---CCCHH-----HHHHHH
Q ss_conf 8618888888835632001456712899999832788------739999331554231--1---77115-----566554
Q gi|254780270|r 397 MSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS------NPLLLLDEIDKMGSD--L---RGDPS-----AALLEV 460 (820)
Q Consensus 397 islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~------npv~~ldeidk~~~~--~---~gdp~-----~allev 460 (820)
..---.+. | -|||.----|+.-|..+--. ..++++|||||++.. . .-|.+ .|||-+
T Consensus 140 aDAT~lTE-a-------GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLki 211 (411)
T PRK05342 140 ADATTLTE-A-------GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 211 (411)
T ss_pred EEECEECC-C-------CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 86120012-6-------745607999999999982888998836828885023454247888887776512489999998
Q ss_pred CCCCCCC----CEEEEE--CCCCCCCCCEEEEEECCC-----------------------------------------C-
Q ss_conf 0600168----133201--035236442799993486-----------------------------------------5-
Q gi|254780270|r 461 LDPAQNS----SFVDHY--LEVEYDLSDVMFIMTANT-----------------------------------------L- 492 (820)
Q Consensus 461 ldp~qn~----~f~d~y--~~~~~dls~v~fi~tan~-----------------------------------------~- 492 (820)
+.-+.-+ .-+-|= =-+++|-+++||||.--- +
T Consensus 212 iEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi 291 (411)
T PRK05342 212 LEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLV 291 (411)
T ss_pred HCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHH
T ss_conf 75871411888777787765167614717999115533589999863578876778876641100056787627987888
Q ss_pred C--CCHHHCCCEEEE-EECCCCHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHH
Q ss_conf 5--441311724799-82587868999899---98608989986257813132289999999731-77410234788879
Q gi|254780270|r 493 N--IPLPLMDRMEII-RIAGYTEEEKLQIA---KNHLVKKVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERAL 565 (820)
Q Consensus 493 ~--i~~~l~drme~i-~~~~y~~~ek~~i~---~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i 565 (820)
. +-|-|.-|+-|| .+...+.++=+.|- ++-|+.+..+-..+..-++.|+++|++.|.+. ..+..|-|.|.-.+
T Consensus 292 ~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIl 371 (411)
T PRK05342 292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSIL 371 (411)
T ss_pred HCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 73883776146640546244799999999658741599999999975496799868999999999998475745779999
Q ss_pred HHHHHHHHHHHHCCCC-CEECCCHHHHHHH
Q ss_conf 9998987654211785-2012796786753
Q gi|254780270|r 566 MKIARKAVTKIVKNSD-TTVSINENNLQDY 594 (820)
Q Consensus 566 ~~i~r~~~~~~~~~~~-~~~~i~~~~l~~~ 594 (820)
+.+...+-.++-..+. ..++||.+.+..-
T Consensus 372 E~iLld~MFelPs~~~v~~v~It~~~V~~~ 401 (411)
T PRK05342 372 EEVLLDVMFELPSREDVEKVVITEEVVEGK 401 (411)
T ss_pred HHHHHHHHCCCCCCCCCCEEEECHHHHCCC
T ss_conf 999788754488989970999887997799
No 31
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.60 E-value=1.3e-13 Score=121.89 Aligned_cols=190 Identities=24% Similarity=0.368 Sum_probs=130.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE--CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC---CCCCEEEEEEC
Q ss_conf 35998605656502799999977088249986--18888888835632001456712899999832---78873999933
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMS--LGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA---KRSNPLLLLDE 441 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~~is--lgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~---~~~npv~~lde 441 (820)
+=+-|.|||||||||||+-||+..+.+|+.+| ..|+.| ||- ||...++. --...|+++||
T Consensus 53 ~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~sgvkd---lr~------------ii~~A~~~~~~~g~~tILFIDE 117 (726)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKD---LRA------------EVDAAKERLERHGKRTILFIDE 117 (726)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHH---HHH------------HHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8278889799999999999988748867998562037799---999------------9999999987459965999862
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE--EECCCC-CCCHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 155423117711556655406001681332010352364427999--934865-54413117247998258786899989
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI--MTANTL-NIPLPLMDRMEIIRIAGYTEEEKLQI 518 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi--~tan~~-~i~~~l~drme~i~~~~y~~~ek~~i 518 (820)
|--.+++-+ .+||..+.- ..+.+| +|-|-. .+.+||+.|+-|+++...+.++-..|
T Consensus 118 IHRfNK~QQ----D~LLp~vE~-----------------G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~i 176 (726)
T PRK13341 118 VHRFNKAQQ----DALLPWVEN-----------------GTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQL 176 (726)
T ss_pred HHHCCHHHH----HHHHHHHCC-----------------CEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHH
T ss_conf 542588789----987888606-----------------83899970478974364298883234667438999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEECCCHHHHHHHHCC
Q ss_conf 9986089899862578131322899999997317741023478887999989876542-117852012796786753052
Q gi|254780270|r 519 AKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKI-VKNSDTTVSINENNLQDYLGV 597 (820)
Q Consensus 519 ~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~-~~~~~~~~~i~~~~l~~~lg~ 597 (820)
.++-|- -++.|+....+.++++++.+|++.-.=. .|.+=-.++ .+... -.+.+..+.|+...+++.++.
T Consensus 177 l~rAl~---d~~~g~~~~~i~i~~~al~~l~~~s~GD--aR~aLN~LE-----lav~~~~~~~~~~~~i~~~~~~~~~~~ 246 (726)
T PRK13341 177 LKRALQ---DKERGYGDRNIDLEPEAEKHLVDVANGD--ARSLLNALE-----LAVESTPPDEDGVIHINLAIAEESIQQ 246 (726)
T ss_pred HHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHCCCC--HHHHHHHHH-----HHHHHCCCCCCCCEEECHHHHHHHHHH
T ss_conf 999987---6743256678775989999999975973--999999999-----999707457688344359999999856
Q ss_pred CCCCC
Q ss_conf 00033
Q gi|254780270|r 598 PRYKY 602 (820)
Q Consensus 598 ~~~~~ 602 (820)
....+
T Consensus 247 ~~~~Y 251 (726)
T PRK13341 247 RAVLY 251 (726)
T ss_pred HHHCC
T ss_conf 66056
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.59 E-value=4.6e-13 Score=117.72 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=145.9
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHCCC-----C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
Q ss_conf 87766520116899999999999984244-----4-67359986056565027999999770882499861888888883
Q gi|254780270|r 335 RILDQDHFGLEKVKERIIEYLAVQMRVIK-----N-KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADI 408 (820)
Q Consensus 335 ~iLd~~hyGl~~vK~rile~lav~~~~~~-----~-~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i 408 (820)
++-=+|.-|++++|+-+.|.+...+--.+ . -+.-++|+||||||||-|||.+|.--|-||..+| .|+.
T Consensus 173 ~vtF~DVaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~s------gs~F 246 (631)
T CHL00176 173 GITFNDVAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS------GSEF 246 (631)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEE------HHHH
T ss_conf 9775322885899999999999835958876449968965898898998788999998565588469988------3785
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH----CCC--CH----HHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 563200145671289999983278873-9999331554231----177--11----556655406001681332010352
Q gi|254780270|r 409 RGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD----LRG--DP----SAALLEVLDPAQNSSFVDHYLEVE 477 (820)
Q Consensus 409 ~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~----~~g--dp----~~allevldp~qn~~f~d~y~~~~ 477 (820)
. --|||--..|+=+-..+|+..-| +|++||||-+|.. ..| |. -+.||.=+|- |..
T Consensus 247 ~---e~~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDG-----f~~------ 312 (631)
T CHL00176 247 V---EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDG-----FEG------ 312 (631)
T ss_pred H---HHHCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-----CCC------
T ss_conf 5---64215558999999999986399699987101201147898889850899999999998428-----887------
Q ss_pred CCCCCEEEEEECCCCC-CCHHHC-----CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 3644279999348655-441311-----7247998258786899989998608989986257813132289999999731
Q gi|254780270|r 478 YDLSDVMFIMTANTLN-IPLPLM-----DRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 478 ~dls~v~fi~tan~~~-i~~~l~-----drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
-+.|+.|+.-|-.+ ++++|+ ||- |.++--..++..+|.+-|+-.+- +. .++. +..|.+.
T Consensus 313 --~~gViViaATNrpd~LDpALlRPGRFDR~--I~V~lPD~~gR~~IL~vh~k~~~-----l~-~dvd-----l~~iA~~ 377 (631)
T CHL00176 313 --NKGVIVIAATNRIDILDAALLRPGRFDRQ--VTVSLPDFEGRLDILKVHARNKK-----LA-EDVS-----LELIARR 377 (631)
T ss_pred --CCCEEEEEECCCCCCCCHHHCCCCCCCEE--EEECCCCHHHHHHHHHHHHHCCC-----CC-CCHH-----HHHHHHH
T ss_conf --88869998258855456866268877549--98269898999999999970786-----66-5300-----9999862
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHH
Q ss_conf 7741023478887999989876542117852012796786753
Q gi|254780270|r 552 FTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDY 594 (820)
Q Consensus 552 Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~ 594 (820)
-.-=+|- .|+.+|+.+|+.-+..... .|+.+++.+.
T Consensus 378 T~GfSGA-----dLanlvNEAal~AaR~~~~--~it~~d~~~A 413 (631)
T CHL00176 378 TPGFSGA-----DLANLLNEAAILAARRRKN--QITMSEIDEA 413 (631)
T ss_pred CCCCCHH-----HHHHHHHHHHHHHHHHCCC--CCCHHHHHHH
T ss_conf 6998678-----8876999999999984777--6478899999
No 33
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-13 Score=121.90 Aligned_cols=221 Identities=23% Similarity=0.345 Sum_probs=151.3
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
Q ss_conf 520116899999999999984244-------4673599860565650279999997708824998618888888835632
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~ 412 (820)
|+-||+.+|+.+.|.+......+. .....++|+||||+|||.+||.+|.-++.+|..+..+.+-+
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s-------- 314 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS-------- 314 (494)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHH--------
T ss_conf 323637799999999999997088763258988836999889997589999998754498248843355540--------
Q ss_pred CCCCCCCCHHHHHHHHHCCCCC-EEEEEECHHHHHHHCCCC-------HHHHHHHHCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 0014567128999998327887-399993315542311771-------15566554060016813320103523644279
Q gi|254780270|r 413 RTYIGSMPGRIIQSLKRAKRSN-PLLLLDEIDKMGSDLRGD-------PSAALLEVLDPAQNSSFVDHYLEVEYDLSDVM 484 (820)
Q Consensus 413 ~ty~ga~pg~ii~~l~~~~~~n-pv~~ldeidk~~~~~~gd-------p~~allevldp~qn~~f~d~y~~~~~dls~v~ 484 (820)
.|+|.---.|-+...+|.... +|+++||||++.+....+ ..+-||-.+|-- =+.+.|+
T Consensus 315 -k~vGesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~-------------e~~~~v~ 380 (494)
T COG0464 315 -KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGI-------------EKAEGVL 380 (494)
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC-------------CCCCCEE
T ss_conf -77659999999999999966998897488666741289987637999999999997475-------------4437648
Q ss_pred EEEECCCCC-CCHHHCC--CE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 999348655-4413117--24-7998258786899989998608989986257813132289999999731774102347
Q gi|254780270|r 485 FIMTANTLN-IPLPLMD--RM-EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS 560 (820)
Q Consensus 485 fi~tan~~~-i~~~l~d--rm-e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~ 560 (820)
-|++.|..+ ++++++- |+ .+|.++.++.++...|.+.|+--+... + .-.+.-..+..+-+.|+ |
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~---~~~~~~~~l~~~t~~~s---g--- 448 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---L---AEDVDLEELAEITEGYS---G--- 448 (494)
T ss_pred EEECCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC---H---HHHHHHHHHHHHHCCCC---H---
T ss_conf 9964798332687562436630378717989899999999985415651---1---55641999998752778---9---
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCC
Q ss_conf 8887999989876542117852012796786753052
Q gi|254780270|r 561 FERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGV 597 (820)
Q Consensus 561 l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~ 597 (820)
..|..+||.++........ ...++.+++.+.+..
T Consensus 449 --adi~~i~~ea~~~~~~~~~-~~~~~~~~~~~a~~~ 482 (494)
T COG0464 449 --ADIAALVREAALEALREAR-RREVTLDDFLDALKK 482 (494)
T ss_pred --HHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHH
T ss_conf --9999999999998998545-776349999999862
No 34
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.58 E-value=4.4e-13 Score=117.90 Aligned_cols=198 Identities=25% Similarity=0.319 Sum_probs=116.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCC
Q ss_conf 65201168999999999999842444673599860565650279999997708824998618888888835632001456
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGS 418 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga 418 (820)
+|..|-+.++...--++--.+.....-+ -+.|.|||||||||+|+-||++++.+|...|-..+.
T Consensus 24 ~e~vGQehl~~~l~~~i~a~~~~~~~l~-h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~--------------- 87 (234)
T pfam05496 24 DEYIGQEKVKENLKIFIEAAKKRGEALD-HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--------------- 87 (234)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHH---------------
T ss_conf 6606949999999999998874277766-278878999988899999998408753761426664---------------
Q ss_pred CCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECC-------CCCCCCCEEEE-EECC
Q ss_conf 712899999832788739999331554231177115566554060016813320103-------52364427999-9348
Q gi|254780270|r 419 MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE-------VEYDLSDVMFI-MTAN 490 (820)
Q Consensus 419 ~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~-------~~~dls~v~fi-~tan 490 (820)
.++-+...+...+ .+.|+++|||.-++...+ .+||-. .-....|--++ ..+++-...|| ||--
T Consensus 88 ~~~di~~~l~~~~-~~~ILFIDEIHr~nK~qq----d~Llp~----vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe 158 (234)
T pfam05496 88 KPGDLAAILTNLE-PGDVLFIDEIHRLNRAVE----EILYPA----MEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTR 158 (234)
T ss_pred HHHHHHHHHHHCC-CCCEEEEECHHHCCHHHH----HHCCCC----CCCCEEEEEECCCCCCEEEECCCCCEEEEEECCC
T ss_conf 3899999998458-998899966543587688----744553----3461699996367663246526897599852156
Q ss_pred CCCCCHHHCCCEEE-EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 65544131172479-98258786899989998608989986257813132289999999731774102347888799998
Q gi|254780270|r 491 TLNIPLPLMDRMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIA 569 (820)
Q Consensus 491 ~~~i~~~l~drme~-i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~ 569 (820)
.-.+|.||++|+-+ .++..|+.+|=..|.++ .++. .++.+++++++.|.+.- ....|..-+.|..++
T Consensus 159 ~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r-----~~~~-----l~i~i~~eal~~IA~~s--~Gd~R~ALnlLe~v~ 226 (234)
T pfam05496 159 AGLLTSPLRDRFGIVLRLEFYSVEELEEIVKR-----SARI-----LGVEIDEEGAAEIARRS--RGTPRIANRLLRRVR 226 (234)
T ss_pred CCCCCHHHHHHHHHEEECCCCCHHHHHHHHHH-----HHHH-----CCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_conf 66477779976211244246899999999999-----9998-----39995999999999977--998999989999999
Q ss_pred HHHH
Q ss_conf 9876
Q gi|254780270|r 570 RKAV 573 (820)
Q Consensus 570 r~~~ 573 (820)
..+.
T Consensus 227 d~a~ 230 (234)
T pfam05496 227 DFAQ 230 (234)
T ss_pred HHHH
T ss_conf 9998
No 35
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.57 E-value=8e-14 Score=123.49 Aligned_cols=173 Identities=29% Similarity=0.364 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
Q ss_conf 06889987766520116899999999999984244467359986056565027999999770882499861888888883
Q gi|254780270|r 329 NLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADI 408 (820)
Q Consensus 329 dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i 408 (820)
.+...+..+...-+|-+.+..+++--+ ..|-.+.|.||||||||.+++++|++++++|+||.+----+.+++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~--------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLAL--------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDL 85 (329)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHH--------HCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
T ss_conf 666666522565526699999999999--------859977877989877799999999983898189956899888882
Q ss_pred CCC-----C---CCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 563-----2---00145671289999983278873999933155423117711556655406001681332010352364
Q gi|254780270|r 409 RGH-----R---RTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 (820)
Q Consensus 409 ~gh-----~---~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl 480 (820)
.|- . ..+.--++|-+..+.. ++.|+|||++....+ .+|||++++=. .++..... ++++
T Consensus 86 ~G~~~~~~~~~~~~~~~~~~gpl~~~~~------~ill~DEInra~p~~----q~aLl~~l~e~---~vt~~~~~-~~~~ 151 (329)
T COG0714 86 LGTYAYAALLLEPGEFRFVPGPLFAAVR------VILLLDEINRAPPEV----QNALLEALEER---QVTVPGLT-TIRL 151 (329)
T ss_pred CCHHHHHHHHCCCCEEEEECCCCCCCCC------EEEEEECCCCCCHHH----HHHHHHHHHHC---EEEECCCC-CCCC
T ss_conf 0568887664257718984687334513------389987034589889----99999999726---89707966-5337
Q ss_pred CC-EEEEEECC-----CC-CCCHHHCCCEEEEEECCCC-H-HHHHHHHHHHH
Q ss_conf 42-79999348-----65-5441311724799825878-6-89998999860
Q gi|254780270|r 481 SD-VMFIMTAN-----TL-NIPLPLMDRMEIIRIAGYT-E-EEKLQIAKNHL 523 (820)
Q Consensus 481 s~-v~fi~tan-----~~-~i~~~l~drme~i~~~~y~-~-~ek~~i~~~~l 523 (820)
.. .++|+|.| .. .+|.+++||+-+...-+|. . .|...+..++.
T Consensus 152 ~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 152 PPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 9987899826867657887899888810388776489973889999987365
No 36
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.56 E-value=9.8e-13 Score=115.24 Aligned_cols=215 Identities=23% Similarity=0.386 Sum_probs=135.3
Q ss_pred HHCCCCC-CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 5404158-766322106889987766520116899999999999984244467359986056565027999999770882
Q gi|254780270|r 315 LLGVPWD-KKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 315 ~~~lPW~-~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
|++-||- ||-+.++| |.-|.+++++++-.++. +.+-|-+.|.||||+||||+|+.+|+.+.-+
T Consensus 1 m~~~lW~eKYRP~~l~----------di~g~~~~~~~L~~~i~------~~~~phlLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 1 MMEEIWVEKYRPRSLD----------EVVGQEEIVERLKSFVK------EKNMPHLLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred CCHHHHHHCCCCCCHH----------HHCCCHHHHHHHHHHHH------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9423564601989899----------94196999999999998------7998669888959988999999999997698
Q ss_pred -----EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC----EEEEEECHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf -----49986188888888356320014567128999998327887----399993315542311771155665540600
Q gi|254780270|r 394 -----YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN----PLLLLDEIDKMGSDLRGDPSAALLEVLDPA 464 (820)
Q Consensus 394 -----f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n----pv~~ldeidk~~~~~~gdp~~allevldp~ 464 (820)
+..+.- |+-||-. ..-- .|....+....+ -|++|||+|.|+.+. .+||+..++-
T Consensus 65 ~~~~~~lelna------sd~r~id-----~vr~-~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~a----q~aL~~~mE~- 127 (318)
T PRK00440 65 YWRENFLELNA------SDERGID-----VIRN-KIKEFARTAPVGGAPFKIIFLDEADNLTSDA----QQALRRTMEM- 127 (318)
T ss_pred CCCCCEEEECC------CCCCCHH-----HHHH-HHHHHHHHCCCCCCCEEEEEEECCCCCCHHH----HHHHHHHHHC-
T ss_conf 64347689516------4566717-----8999-9999997267789973899986855322556----7888764310-
Q ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 16813320103523644279999348655-44131172479982587868999899986089899862578131322899
Q gi|254780270|r 465 QNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDG 543 (820)
Q Consensus 465 qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~ 543 (820)
| -+.+.||+++|+.+ |.+|++.|-..|++..-+.++-...-+ ++++. +.+.++++
T Consensus 128 --------~------~~~~~fil~~n~~~kii~~i~SRc~~i~f~~~~~~~i~~~L~-----~I~~~-----E~i~~~~~ 183 (318)
T PRK00440 128 --------Y------SQTTRFILSCNYSSKIIDPIQSRCAVFRFSPLPKEAVIERLR-----YIAKN-----EGLEITDD 183 (318)
T ss_pred --------C------CCCCEEEEECCCCCCCCCCHHHHHEEEECCCCCHHHHHHHHH-----HHHHH-----CCCCCCHH
T ss_conf --------5------666258863488333761556551011157899999999999-----99998-----59998999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 99999731774102347888799998987654211785201279678675305200
Q gi|254780270|r 544 VLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 544 ~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
++..|+...- -++.+.|..+-.... ....||.+.+.+.+|.+.
T Consensus 184 ~l~~i~~~s~-----gdlR~ain~Lq~~~~--------~~~~it~~~v~~~~~~~~ 226 (318)
T PRK00440 184 ALEAIYYVSE-----GDMRKAINALQAAAA--------TGKEVTEEAVYKITGTAR 226 (318)
T ss_pred HHHHHHHHCC-----CCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHCCCC
T ss_conf 9999998649-----989999999999997--------489878999999976999
No 37
>CHL00181 cbbX CbbX; Provisional
Probab=99.54 E-value=3.7e-12 Score=110.93 Aligned_cols=227 Identities=25% Similarity=0.368 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----
Q ss_conf 21068899877665201168999999999999842---------4446735998605656502799999977088-----
Q gi|254780270|r 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV---------IKNKGLILCFVGPPGVGKTSLAQSIAKATGR----- 392 (820)
Q Consensus 327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~---------~~~~g~il~l~gppgvGKts~~~sia~al~r----- 392 (820)
+..+..+=+.||++--||+.||++|-+..+..+.+ ....+..+.|.||||||||++|+.+|+.|..
T Consensus 11 ~~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~ 90 (287)
T CHL00181 11 KTQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIK 90 (287)
T ss_pred HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 53499999999886469699999999999999999999987999888765388878998679999999999999869955
Q ss_pred --CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH-HCCC----CHHHHHHHHCCCCC
Q ss_conf --2499861888888883563200145671289999983278873999933155423-1177----11556655406001
Q gi|254780270|r 393 --QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS-DLRG----DPSAALLEVLDPAQ 465 (820)
Q Consensus 393 --~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~-~~~g----dp~~allevldp~q 465 (820)
.|+.. +.+++-| .|+|..--+.-+.+.+ .+..|+++||-=-+.+ +..+ ..-..|+..++...
T Consensus 91 ~g~vve~------~r~dLvg---~yvG~Ta~kt~~~i~~--a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~ 159 (287)
T CHL00181 91 KGHLITV------TRDDLVG---QYIGHTAPKTKEVLKK--AMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQR 159 (287)
T ss_pred CCEEEEE------CHHHHCC---CCCCCCHHHHHHHHHH--CCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8958995------3588416---3535216999999996--459879982446535788999837999999999987079
Q ss_pred CCCEEEEECCCCCCCCCEEEEE-ECCC-----CCCCHHHCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6813320103523644279999-3486-----554413117247-99825878689998999860898998625781313
Q gi|254780270|r 466 NSSFVDHYLEVEYDLSDVMFIM-TANT-----LNIPLPLMDRME-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEEC 538 (820)
Q Consensus 466 n~~f~d~y~~~~~dls~v~fi~-tan~-----~~i~~~l~drme-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~ 538 (820)
.++.+|+ -+-+ +.-.+-|..|+. .|+++.||.+|-.+|++.++-.+ ..
T Consensus 160 ---------------~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~----------~~ 214 (287)
T CHL00181 160 ---------------DDLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQ----------QY 214 (287)
T ss_pred ---------------CCEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHC----------CC
T ss_conf ---------------98899984678999999985904787688723779859999999999999986----------98
Q ss_pred CCCHHHHHHHHH---CCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 228999999973---17741---023478887999989876542117852012796786
Q gi|254780270|r 539 CISDGVLLDIIR---LFTHE---AGVRSFERALMKIARKAVTKIVKNSDTTVSINENNL 591 (820)
Q Consensus 539 ~~~~~~i~~ii~---~Yt~E---aGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l 591 (820)
.+++++...+.+ ...+. +.-|..+..+.++.++.|..++..... .++.++|
T Consensus 215 ~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~qa~Rl~~~~~~--~~~~~dL 271 (287)
T CHL00181 215 QLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMRQANRIFASGGK--VLTKADL 271 (287)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHH
T ss_conf 25879999999999985089998748999999999999999886567999--9999997
No 38
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.52 E-value=2.7e-14 Score=127.02 Aligned_cols=126 Identities=28% Similarity=0.421 Sum_probs=93.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHCCCCCC---CCCCCCHHHHHHHHHCCCCCEEEEEECHHH
Q ss_conf 9986056565027999999770-882499861888888883563200---145671289999983278873999933155
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKAT-GRQYVRMSLGGVYDEADIRGHRRT---YIGSMPGRIIQSLKRAKRSNPLLLLDEIDK 444 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al-~r~f~~islgg~~d~~~i~gh~~t---y~ga~pg~ii~~l~~~~~~npv~~ldeidk 444 (820)
+.|+||||+|||++|+.+|+++ +++++++.+..-.+++++.|+..- .....||-+++++++. .+++|||||+
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g----~vl~lDEin~ 77 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAREG----EIAVLDEINR 77 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCCCC----CEEEECCHHH
T ss_conf 899989975699999999998079831112146556522205734237993578155141010128----6899634344
Q ss_pred HHHHCCCCHHHHHHHHCCCCCCCCEE-EEECCC-CC-CCCCEEEEEECCC----CC-CCHHHCCCE
Q ss_conf 42311771155665540600168133-201035-23-6442799993486----55-441311724
Q gi|254780270|r 445 MGSDLRGDPSAALLEVLDPAQNSSFV-DHYLEV-EY-DLSDVMFIMTANT----LN-IPLPLMDRM 502 (820)
Q Consensus 445 ~~~~~~gdp~~allevldp~qn~~f~-d~y~~~-~~-dls~v~fi~tan~----~~-i~~~l~drm 502 (820)
.+.+. .++|+.+||--+-.--. .+.+.. ++ .-.++.||||+|. .+ ++++|+||+
T Consensus 78 a~~~v----~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~RF 139 (139)
T pfam07728 78 ANPDV----LNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRSRF 139 (139)
T ss_pred CCHHH----HHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 89999----999999974896983689727336666789996999975896547800998997509
No 39
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.50 E-value=2.3e-12 Score=112.40 Aligned_cols=178 Identities=27% Similarity=0.358 Sum_probs=126.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCC
Q ss_conf 65201168999999999999842444673599860565650279999997708824998618888888835632001456
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGS 418 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga 418 (820)
++--|-+++|+++--|+.--+..+..- ..++|+||||.|||++|..||+-||.+|.-.|=--+.
T Consensus 25 ~efiGQ~~i~~~L~v~i~Aak~r~e~l-dH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~le--------------- 88 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--------------- 88 (328)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC---------------
T ss_conf 663595999999999999999649998-8057658899889999999999868881562450016---------------
Q ss_pred CCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECC-------CCCCCCCEEEEEECCC
Q ss_conf 712899999832788739999331554231177115566554060016813320103-------5236442799993486
Q gi|254780270|r 419 MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE-------VEYDLSDVMFIMTANT 491 (820)
Q Consensus 419 ~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~-------~~~dls~v~fi~tan~ 491 (820)
-||-++..|...+. +-|+++|||--++... =|+|=|.--+-..|--++ +.+||....+|.----
T Consensus 89 k~~DL~~iLt~l~~-~dvLFIDEIHRl~~~v--------EE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr 159 (328)
T PRK00080 89 KAGDLAALLTNLEE-GDVLFIDEIHRLSPVV--------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred CHHHHHHHHHHCCC-CCEEEEHHHHHCCHHH--------HHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCC
T ss_conf 74789999960887-8767650653248889--------98857987752345786478653245558998347401367
Q ss_pred CC-CCHHHCCCEEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 55-4413117247998-258786899989998608989986257813132289999999731
Q gi|254780270|r 492 LN-IPLPLMDRMEIIR-IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 492 ~~-i~~~l~drme~i~-~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
.. ++.||+||+-++. +.-|+.+|=.+|.++. .. .-.+.+++++...|...
T Consensus 160 ~g~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rs-----a~-----~l~i~i~~~~~~eIA~r 211 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRS-----AR-----ILGIEIDEEGALEIARR 211 (328)
T ss_pred CCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHH-----HH-----HHCCCCCHHHHHHHHHH
T ss_conf 665776789757933663458999999999999-----99-----83988789999999986
No 40
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.49 E-value=3.1e-13 Score=119.05 Aligned_cols=274 Identities=22% Similarity=0.314 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------
Q ss_conf 8999999987531102578999998765404158766322106889987766520116899999999999984-------
Q gi|254780270|r 288 ALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR------- 360 (820)
Q Consensus 288 ~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~------- 360 (820)
-++.=.|++.|....++-....+ .||- -+.-|..||+-.=|-|.+|+-.= .||+..
T Consensus 65 gerd~~~~~~~~~~~~~~~~~~~------~lP~---------P~eik~~LD~YVIGQe~AKKVLs--VAVYNHYKRl~~~ 127 (452)
T TIGR00382 65 GERDGTRLRRKESKEVEEELELS------ELPT---------PKEIKAHLDEYVIGQEQAKKVLS--VAVYNHYKRLNLK 127 (452)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH------CCCC---------CHHHHHHHCCCCCCCCCCCEEEE--EEEHHHHHHHHHH
T ss_conf 54310235654202456666652------4788---------27999972136123101052543--2411246665324
Q ss_pred --CCC------------------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC
Q ss_conf --244------------------467359986056565027999999770882499861888888883563200145671
Q gi|254780270|r 361 --VIK------------------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420 (820)
Q Consensus 361 --~~~------------------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~p 420 (820)
+.+ .|+. |+|+||-|=|||-||+..|+.|+-||. +.|..-+.== =|||--=
T Consensus 128 ~~n~~~d~~D~nvelehleeVEL~KSN-ILLiGPTGSGKTLLAqTLA~~L~VPfA------iADATtLTEA--GYVGEDV 198 (452)
T TIGR00382 128 EKNKKSDNGDSNVELEHLEEVELSKSN-ILLIGPTGSGKTLLAQTLARILNVPFA------IADATTLTEA--GYVGEDV 198 (452)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHCCCCEE------ECCHHHHHCC--CCCCCCH
T ss_conf 304555884000235444443330066-245468885268999999987388742------1111102006--6424228
Q ss_pred HHHHHHHHHC------CCCCEEEEEECHHHHHHHC-C----CCHH-----HHHHHHC--------------CCCCCCCEE
Q ss_conf 2899999832------7887399993315542311-7----7115-----5665540--------------600168133
Q gi|254780270|r 421 GRIIQSLKRA------KRSNPLLLLDEIDKMGSDL-R----GDPS-----AALLEVL--------------DPAQNSSFV 470 (820)
Q Consensus 421 g~ii~~l~~~------~~~npv~~ldeidk~~~~~-~----gdp~-----~allevl--------------dp~qn~~f~ 470 (820)
==|++-|.++ +.--.+||+|||||+|.-. + =|.+ =|||-++ -|.|| |
T Consensus 199 ENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~--~- 275 (452)
T TIGR00382 199 ENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQE--F- 275 (452)
T ss_pred HHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCC--E-
T ss_conf 8999999874145524527850898422310121577801122175549999998760323431754488688657--6-
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHH-------HHHHHHHHHHCC----------
Q ss_conf 201035236442799993486554413117247998258786899989998-------608989986257----------
Q gi|254780270|r 471 DHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKN-------HLVKKVLTEHAL---------- 533 (820)
Q Consensus 471 d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~~~~y~~~ek~~i~~~-------~l~p~~~~~~~~---------- 533 (820)
|.+|=|++||||----..+......|+.-=--=|++..+|-..-++ ++-|.-|=++||
T Consensus 276 -----iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV 350 (452)
T TIGR00382 276 -----IQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGRLPV 350 (452)
T ss_pred -----EEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCC
T ss_conf -----886476400110543444899998874555333545521004578789999975171112210555101105340
Q ss_pred ---------------------------------CCCCCCCCHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ---------------------------------8131322899999997317-741023478887999989876542117
Q gi|254780270|r 534 ---------------------------------KQEECCISDGVLLDIIRLF-THEAGVRSFERALMKIARKAVTKIVKN 579 (820)
Q Consensus 534 ---------------------------------~~~~~~~~~~~i~~ii~~Y-t~EaGvR~l~r~i~~i~r~~~~~~~~~ 579 (820)
..-++.|.+|||+.|.+.- .|-.|-|.|.-.++.+|.-+-.++=.-
T Consensus 351 ~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A~~RkTGARGLRsI~E~~lLDvMfeLPs~ 430 (452)
T TIGR00382 351 IATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFELPSL 430 (452)
T ss_pred EECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 20278788789999852544448899999716456113455888999999998507675157899999987531478861
Q ss_pred -CCCEECCCHHHHHHHH
Q ss_conf -8520127967867530
Q gi|254780270|r 580 -SDTTVSINENNLQDYL 595 (820)
Q Consensus 580 -~~~~~~i~~~~l~~~l 595 (820)
+-..+.||.+.+.+-.
T Consensus 431 ~~~~kv~it~~~v~~~~ 447 (452)
T TIGR00382 431 EDLEKVVITKETVLKQS 447 (452)
T ss_pred HCCCEEEEEHHHHCCCC
T ss_conf 15756787077642664
No 41
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.49 E-value=5e-12 Score=109.88 Aligned_cols=217 Identities=23% Similarity=0.326 Sum_probs=143.7
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHCC---CC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
Q ss_conf 76652011689999999999998424---44---6735998605656502799999977088249986188888888356
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMRVI---KN---KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~~~---~~---~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~g 410 (820)
-=+|.-|++++|+-+.|.+...+--. .. -..-++|+||||||||.|||.+|.--|-||..+| .|++-
T Consensus 150 tF~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~s------gsef~- 222 (644)
T PRK10733 150 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS------GSDFV- 222 (644)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEE------HHHHH-
T ss_conf 71040897899999999999812979999749979985177798998778999998645598089978------47730-
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHC----CC--C----HHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 3200145671289999983278873-99993315542311----77--1----155665540600168133201035236
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDL----RG--D----PSAALLEVLDPAQNSSFVDHYLEVEYD 479 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~----~g--d----p~~allevldp~qn~~f~d~y~~~~~d 479 (820)
--|||.-..|+=+-..+|+..-| +|++||||-++..- .| | .-+.||.=+|- |..
T Consensus 223 --e~~vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDG-----f~~-------- 287 (644)
T PRK10733 223 --EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-----FEG-------- 287 (644)
T ss_pred --HEEEECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-----CCC--------
T ss_conf --22253068999999999996699799995322036667898889832888789999999548-----888--------
Q ss_pred CCCEEEEEECCCCC-CCHHHCC--CEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC-
Q ss_conf 44279999348655-4413117--247-998258786899989998608989986257813132289999999731774-
Q gi|254780270|r 480 LSDVMFIMTANTLN-IPLPLMD--RME-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTH- 554 (820)
Q Consensus 480 ls~v~fi~tan~~~-i~~~l~d--rme-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~- 554 (820)
-..|+.|+.-|-.+ ++++|+- |+. .|.++--..++..+|.+-|+-.+- +. .++. ...|...|-
T Consensus 288 ~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkvh~~~~~-----l~-~dvd------l~~lA~~T~G 355 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-----LA-PDID------AAIIARGTPG 355 (644)
T ss_pred CCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC-----CC-CCCC------HHHHHCCCCC
T ss_conf 7876999626997554777716888655999779898899999999964887-----77-3115------8988445998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHH
Q ss_conf 1023478887999989876542117852012796786753
Q gi|254780270|r 555 EAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDY 594 (820)
Q Consensus 555 EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~ 594 (820)
=+|- .|..+|+.+|+.-+..... .|+.+++++.
T Consensus 356 fSGA-----DLaNlvNEAAl~AaR~~k~--~It~~d~e~A 388 (644)
T PRK10733 356 FSGA-----DLANLVNEAALFAARGNKR--VVSMVEFEKA 388 (644)
T ss_pred CCHH-----HHCCHHHHHHHHHHHHCCC--CCCHHHHHHH
T ss_conf 6703-----3325999999999870875--4307668998
No 42
>KOG0731 consensus
Probab=99.47 E-value=9.7e-12 Score=107.72 Aligned_cols=167 Identities=29% Similarity=0.464 Sum_probs=118.7
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHCCC------CCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH-
Q ss_conf 7766520116899999999999984244------467-35998605656502799999977088249986188888888-
Q gi|254780270|r 336 ILDQDHFGLEKVKERIIEYLAVQMRVIK------NKG-LILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD- 407 (820)
Q Consensus 336 iLd~~hyGl~~vK~rile~lav~~~~~~------~~g-~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~- 407 (820)
|-=+|.-|.+++|+-|.|+....+- |+ +|- .-..|+||||||||.|||.||.--|-||+.+| .||
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKN-P~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS------GSEF 380 (774)
T KOG0731 308 VKFKDVAGVDEAKEELMEFVKFLKN-PEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS------GSEF 380 (774)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEC------HHHH
T ss_conf 7601026708999999999998439-89998747767675178789998678999988530589646413------3788
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHC------CCCH-H----HHHHHHCCCCCCCCEEEEECC
Q ss_conf 3563200145671289999983278873-99993315542311------7711-5----566554060016813320103
Q gi|254780270|r 408 IRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDL------RGDP-S----AALLEVLDPAQNSSFVDHYLE 475 (820)
Q Consensus 408 i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~------~gdp-~----~allevldp~qn~~f~d~y~~ 475 (820)
+- -|+|-.+.|+=.-...++..-| +|++||||-++.-- .|+. . +.||-=+| +
T Consensus 381 vE----~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD------------g 444 (774)
T KOG0731 381 VE----MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD------------G 444 (774)
T ss_pred HH----HHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC------------C
T ss_conf 88----7603434888999987432698079714542003125566667888078889998878752------------7
Q ss_pred CCCCCCCEEEEEECCCCC-CCHHHC-----CCEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 523644279999348655-441311-----72479982587868999899986089899
Q gi|254780270|r 476 VEYDLSDVMFIMTANTLN-IPLPLM-----DRMEIIRIAGYTEEEKLQIAKNHLVKKVL 528 (820)
Q Consensus 476 ~~~dls~v~fi~tan~~~-i~~~l~-----drme~i~~~~y~~~ek~~i~~~~l~p~~~ 528 (820)
+... +.|+|+|+.|-.+ +.++|+ ||- |.++.-+..+...|.+.|+=++-+
T Consensus 445 f~~~-~~vi~~a~tnr~d~ld~allrpGRfdr~--i~i~~p~~~~r~~i~~~h~~~~~~ 500 (774)
T KOG0731 445 FETS-KGVIVLAATNRPDILDPALLRPGRFDRQ--IQIDLPDVKGRASILKVHLRKKKL 500 (774)
T ss_pred CCCC-CCEEEEECCCCCCCCCHHHCCCCCCCCC--EECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 7677-8479981168866428876498755552--324698514168999998621577
No 43
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=8.7e-11 Score=100.50 Aligned_cols=222 Identities=20% Similarity=0.244 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCCCCCHH--------HHCC
Q ss_conf 1689999999999998424446735998605656502799999977088-----24998618888888--------8356
Q gi|254780270|r 344 LEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-----QYVRMSLGGVYDEA--------DIRG 410 (820)
Q Consensus 344 l~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-----~f~~islgg~~d~~--------~i~g 410 (820)
=++=-++|..+|. -.+.+...+ -+.+.||||||||..++.+.+.|.. .|+.|.+-..+... .+.|
T Consensus 35 Re~Ei~~l~~~l~-~~l~g~~~~-n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L~~ 112 (394)
T PRK00411 35 REEQIEELAFALR-PALRGSRPS-NVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSLFG 112 (394)
T ss_pred HHHHHHHHHHHHH-HHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 5999999999999-997599998-47998899998999999999999974689659999696689899999999999569
Q ss_pred CCCCCCCCCCHHHHHHHHHC---CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 32001456712899999832---78873999933155423117711556655406-001681332010352364427999
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRA---KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PAQNSSFVDHYLEVEYDLSDVMFI 486 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~---~~~npv~~ldeidk~~~~~~gdp~~allevld-p~qn~~f~d~y~~~~~dls~v~fi 486 (820)
+.-..-|--...+.+.+.+. .-...|++|||||.+.+.. ....|..++. |++ +.-|++..|
T Consensus 113 ~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~---~~~vLY~L~r~~~~------------~~~~~~~vI 177 (394)
T PRK00411 113 HPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKE---GNDVLYSLLRAHEE------------YPGARIGVI 177 (394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC---CCHHHHHHHHCCCC------------CCCCCEEEE
T ss_conf 989877878999999999986166975899996554020366---50899999854022------------688738999
Q ss_pred EECCCCC----CCHHHCCCE--EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 9348655----441311724--7998258786899989998608989986257813132289999999731774102347
Q gi|254780270|r 487 MTANTLN----IPLPLMDRM--EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS 560 (820)
Q Consensus 487 ~tan~~~----i~~~l~drm--e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~ 560 (820)
+-+|+++ +.+-+.+|+ +.|.+++|+.+|=..|.+.-+ +.++.++ .+++++|..+.....++.| +
T Consensus 178 ~IsN~~~~~~~Ldprv~S~l~~~~i~F~PY~~~qL~~IL~~R~------~~af~~g--v~~~~~i~~~A~~~a~~~G--D 247 (394)
T PRK00411 178 GISSDLTFLYILDPRVKSVFGPEEIVFPPYTADEIFDILKDRV------EEGFYPG--VVSDEVLELIADLTGREHG--D 247 (394)
T ss_pred EEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH------HHCCCCC--CCCHHHHHHHHHHHHHCCC--C
T ss_conf 9976871776640777502786289858999899999999999------8414556--7897899999999855047--5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 88879999898765421178520127967867530
Q gi|254780270|r 561 FERALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 561 l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
..+-|. +||.++ ++++.+.. -.|+.+++....
T Consensus 248 aR~Ald-llr~A~-e~Ae~~g~-~~Vt~~hV~~A~ 279 (394)
T PRK00411 248 ARVAID-LLRRAG-EIAEREGS-RKVTEEDVRKAY 279 (394)
T ss_pred HHHHHH-HHHHHH-HHHHHHCC-CCCCHHHHHHHH
T ss_conf 899999-999999-99997189-965899999999
No 44
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.3e-12 Score=108.65 Aligned_cols=184 Identities=21% Similarity=0.346 Sum_probs=136.3
Q ss_pred CEECCCHHHHHHHHCCC-CCCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEEC---CCCCEEECCCHHHHHHHHHHHH
Q ss_conf 20127967867530520-0033200022336500000000016807999999974---8997244325689999999999
Q gi|254780270|r 582 TTVSINENNLQDYLGVP-RYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMP---GKGEITITGNLKEIMKESILAA 657 (820)
Q Consensus 582 ~~~~i~~~~l~~~lg~~-~~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~---g~g~l~lTG~lg~vmkES~~~A 657 (820)
..+..+.+-|.+..-+. .|..++... .+|-+.--.|-..---++.|++.+.| ++.+-..+|- ++..++
T Consensus 266 GvFeM~~~GL~eV~npS~lFL~er~~~--~~GS~v~~~~EGtRpllvEvQALv~~s~~~nPrR~~~G~------D~nRl~ 337 (456)
T COG1066 266 GVFEMTENGLREVSNPSALFLSERGEQ--TPGSAVVVVMEGTRPLLVEIQALVSPSSFGNPRRVAVGL------DQNRLA 337 (456)
T ss_pred EEEEEECCCEEEECCCHHHHHHCCCCC--CCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECC------CHHHHH
T ss_conf 688984388468038278674226778--998679999962663598861203666688870276053------755899
Q ss_pred HHHHHHHHH-HCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHH
Q ss_conf 999999888-6299855742078147448888478887306899999999983688875610663685030250006568
Q gi|254780270|r 658 SSYVRSKAT-TFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLK 736 (820)
Q Consensus 658 ~s~~k~~~~-~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~ 736 (820)
+-. +.+. +.++. +.++|+.+++. |++.-+-|+|-.|++.|++|++.++|++++.++.|||.|.|.|-||-.+.
T Consensus 338 mll--AVLek~~gl~---l~~~Dvyvnva-GG~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~GEvgL~GeIR~V~~~~ 411 (456)
T COG1066 338 MLL--AVLEKRLGLP---LGDQDVYVNVA-GGVKVTEPAADLAVALALVSSFRNRPLPQDTVVFGEVGLSGEIRPVPRGE 411 (456)
T ss_pred HHH--HHHHHHCCCC---CCCCCEEEECC-CCEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCHH
T ss_conf 999--9999861986---66863799804-87765772688999999999863888998718999503574254267588
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 999999970996998036775507761488770979998193999888760
Q gi|254780270|r 737 EKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHAL 787 (820)
Q Consensus 737 eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al 787 (820)
+.+--|.+.|.+++|+|+.|.. ...+++++.|+++.|+++.++
T Consensus 412 ~RlkEA~klGFk~aivP~~~~~--------~~~~~~~~~v~~l~~a~~~~~ 454 (456)
T COG1066 412 RRLKEAAKLGFKRAIVPKGNIP--------LPEGIKVIGVSTLAEALEVVF 454 (456)
T ss_pred HHHHHHHHCCCCEEECCCCCCC--------CCCCCEEEEEECHHHHHHHHH
T ss_conf 9999999758977974687677--------888815998500999999874
No 45
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.45 E-value=1.5e-12 Score=113.80 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=118.5
Q ss_pred HCCCCC-CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 404158-7663221068899877665201168999999999999842444673599860565650279999997708824
Q gi|254780270|r 316 LGVPWD-KKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY 394 (820)
Q Consensus 316 ~~lPW~-~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f 394 (820)
|+++|- ||-+..+| |..|.+.+++.+..++ .+..-|-+.|.||||+||||+|+.+|++|+-..
T Consensus 1 ~~~lWveKYRP~~~~----------dvvGq~~i~~~L~~~~------~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~ 64 (337)
T PRK12402 1 MAMLWTEKYRPSLFE----------DILGQESVVDHLSALA------ASGNLPHLVVYGPSGSGKTAAVRALARELYGDP 64 (337)
T ss_pred CCCCCCCCCCCCCHH----------HHCCCHHHHHHHHHHH------HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 988532141889799----------8039799999999999------779987698889298489999999999967997
Q ss_pred EE-----EECCCCCC--HHHHCCCCCCC-CCCCCHH-------HHH-HHHHCCCCC------EEEEEECHHHHHHHCCCC
Q ss_conf 99-----86188888--88835632001-4567128-------999-998327887------399993315542311771
Q gi|254780270|r 395 VR-----MSLGGVYD--EADIRGHRRTY-IGSMPGR-------IIQ-SLKRAKRSN------PLLLLDEIDKMGSDLRGD 452 (820)
Q Consensus 395 ~~-----islgg~~d--~~~i~gh~~ty-~ga~pg~-------ii~-~l~~~~~~n------pv~~ldeidk~~~~~~gd 452 (820)
.. +.-..+.+ ...+..+.|.. +-..+++ +++ .++..-... -|++|||.|.|+.+.
T Consensus 65 ~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~A--- 141 (337)
T PRK12402 65 WENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDA--- 141 (337)
T ss_pred CCCCCCEECCCCCCCCCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHH---
T ss_conf 56783331165311356400101664234420153327737899999999986148877880499970713179999---
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15566554060016813320103523644279999348655-44131172479982587868999899986089899862
Q gi|254780270|r 453 PSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEH 531 (820)
Q Consensus 453 p~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~ 531 (820)
.+||+.++.-- -+.+.||+++|+.+ |++|++.|-..++++..+.++-...-+ +++++
T Consensus 142 -q~aLlk~lEe~---------------~~~~~fIl~t~~~~~ii~tI~SRC~~i~F~~~s~~~i~~~L~-----~I~~~- 199 (337)
T PRK12402 142 -QQALRRIMERY---------------SETCRFIFSTTQPSKLIPPIRSRCLPLFFRPVPDDEIRSVLE-----SIAAA- 199 (337)
T ss_pred -HHHHHHHHHCC---------------CCCEEEEEECCCCCCCCHHHHHHCEEEECCCCCHHHHHHHHH-----HHHHH-
T ss_conf -99999887408---------------876699872386444752477624454358989999999999-----99998-
Q ss_pred CCCCCCCCCCHHHHHHHHHC
Q ss_conf 57813132289999999731
Q gi|254780270|r 532 ALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 532 ~~~~~~~~~~~~~i~~ii~~ 551 (820)
+.+.++++++..|++.
T Consensus 200 ----E~i~~~~~~l~~ia~~ 215 (337)
T PRK12402 200 ----EGVEISDDGLDLIAYY 215 (337)
T ss_pred ----CCCCCCHHHHHHHHHH
T ss_conf ----4999899999999998
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.44 E-value=7.3e-12 Score=108.67 Aligned_cols=184 Identities=24% Similarity=0.355 Sum_probs=124.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC-C-CCCEEEEEECHH
Q ss_conf 59986056565027999999770882499861--8888888835632001456712899999832-7-887399993315
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSL--GGVYDEADIRGHRRTYIGSMPGRIIQSLKRA-K-RSNPLLLLDEID 443 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~isl--gg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~-~-~~npv~~ldeid 443 (820)
-+-|.|||||||||||+-||..++..|.++|- .|+. +||. |+..-++. + -.-+|+++|||-
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvk---dlr~------------i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVK---DLRE------------IIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHH---HHHH------------HHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 05777899988889999998761776699515234679---9999------------99999998725883499872253
Q ss_pred HHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE--EECCCC-CCCHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 5423117711556655406001681332010352364427999--934865-5441311724799825878689998999
Q gi|254780270|r 444 KMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI--MTANTL-NIPLPLMDRMEIIRIAGYTEEEKLQIAK 520 (820)
Q Consensus 444 k~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi--~tan~~-~i~~~l~drme~i~~~~y~~~ek~~i~~ 520 (820)
..+.+-+ .+||-.+. =..++|| +|-|-. .+.++|+.|--|.++.+.|.+|-....+
T Consensus 115 RfnK~QQ----D~lLp~vE-----------------~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 115 RFNKAQQ----DALLPHVE-----------------NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK 173 (436)
T ss_pred HCCHHHH----HHHHHHHC-----------------CCEEEEEECCCCCCCEEECHHHHHHHHEEEEECCCHHHHHHHHH
T ss_conf 3374456----55103324-----------------88689996267898714038886110415651699899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCC
Q ss_conf 86089899862578131322899999997317741023478887999989876542117852012796786753052000
Q gi|254780270|r 521 NHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600 (820)
Q Consensus 521 ~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~ 600 (820)
+-+ ..++-||....+.++++++.+++..-. .-+|.+=-.++ .+....+..+ .++.+.+++.++....
T Consensus 174 ra~---~~~~rgl~~~~~~i~~~a~~~l~~~s~--GD~R~aLN~LE-----~~~~~~~~~~---~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 174 RAL---LDEERGLGGQIIVLDEEALDYLVRLSN--GDARRALNLLE-----LAALSAEPDE---VLILELLEEILQRRSA 240 (436)
T ss_pred HHH---HHHHCCCCCCCCCCCHHHHHHHHHHCC--CHHHHHHHHHH-----HHHHHCCCCC---CCCHHHHHHHHHHHHH
T ss_conf 998---654137776556688899999998628--61999988999-----9998627775---2479999999865520
No 47
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.43 E-value=1.1e-11 Score=107.36 Aligned_cols=250 Identities=24% Similarity=0.351 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHH---HHHHHHHHHHCCCCCCCEEEEECCCCCCHH
Q ss_conf 57899999876540415876632210688998776652011689999---999999998424446735998605656502
Q gi|254780270|r 304 ESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKER---IIEYLAVQMRVIKNKGLILCFVGPPGVGKT 380 (820)
Q Consensus 304 E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~r---ile~lav~~~~~~~~g~il~l~gppgvGKt 380 (820)
+...+++-.=.+++-|....++...|+ -=.|.-|.|.+|.. |++||---...++--..-.+|+||||+|||
T Consensus 92 ~~~i~~st~i~vl~~~~~~~~e~~~~i------t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKT 165 (368)
T COG1223 92 GGGIITSTTIFVLETPREEDREIISDI------TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKT 165 (368)
T ss_pred CCCEECCEEEEEECCCCHHHHHHHCCC------CHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHH
T ss_conf 883102237999617514555661366------17664163988888799999964968763457541687789996487
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC-CCCCEEEEEECHHHHHH-----HCCCCHH
Q ss_conf 79999997708824998618888888835632001456712899999832-78873999933155423-----1177115
Q gi|254780270|r 381 SLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA-KRSNPLLLLDEIDKMGS-----DLRGDPS 454 (820)
Q Consensus 381 s~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~-~~~npv~~ldeidk~~~-----~~~gdp~ 454 (820)
-+||++|.-.+-||.-+- .+++-| -|||----+|-+..-+| +..-||++|||+|-++- +.|||.+
T Consensus 166 m~Akalane~kvp~l~vk------at~liG---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVs 236 (368)
T COG1223 166 MMAKALANEAKVPLLLVK------ATELIG---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVS 236 (368)
T ss_pred HHHHHHHCCCCCCEEEEC------HHHHHH---HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHH
T ss_conf 999987254578548711------688888---77435989999999988751984998400245553045788645499
Q ss_pred ---HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ---566554060016813320103523644279999348655-4413117247-99825878689998999860898998
Q gi|254780270|r 455 ---AALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME-IIRIAGYTEEEKLQIAKNHLVKKVLT 529 (820)
Q Consensus 455 ---~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme-~i~~~~y~~~ek~~i~~~~l~p~~~~ 529 (820)
+|||.-||--- .+ -.|.|||.-|..+ .+++.+.|.| -|+..=-..+|.++|...|+-
T Consensus 237 EiVNALLTelDgi~-en------------eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k----- 298 (368)
T COG1223 237 EIVNALLTELDGIK-EN------------EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK----- 298 (368)
T ss_pred HHHHHHHHHCCCCC-CC------------CCEEEEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHH-----
T ss_conf 99999998501744-57------------7569995059846507888865565065648885899999999898-----
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 62578131322899999997317741-02347888799998987654211785201279678675305200
Q gi|254780270|r 530 EHALKQEECCISDGVLLDIIRLFTHE-AGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 530 ~~~~~~~~~~~~~~~i~~ii~~Yt~E-aGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
+.- -.+... ++++... |+. || |+++..+- |.|+..+-.++ .-.|+.++++..|.+.+
T Consensus 299 ~~P---lpv~~~---~~~~~~~-t~g~Sg-Rdikekvl----K~aLh~Ai~ed-~e~v~~edie~al~k~r 356 (368)
T COG1223 299 KFP---LPVDAD---LRYLAAK-TKGMSG-RDIKEKVL----KTALHRAIAED-REKVEREDIEKALKKER 356 (368)
T ss_pred HCC---CCCCCC---HHHHHHH-HCCCCC-HHHHHHHH----HHHHHHHHHHC-HHHHHHHHHHHHHHHHC
T ss_conf 589---765568---9999998-478772-06899999----99999998713-44433889999998633
No 48
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=1.2e-12 Score=114.72 Aligned_cols=132 Identities=25% Similarity=0.335 Sum_probs=90.6
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 984244467359986056565027999999770---88249986188888888356320014567128999998327887
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN 434 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n 434 (820)
..+.....+..++|+||||||||++|+.||+.+ +.+|..++.+.+.......++.+.+ .............+
T Consensus 11 ~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 85 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-----LVRLLFELAEKAKP 85 (151)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH-----HHHHHHHHHHHCCC
T ss_conf 9998187998089989999886599999999712137982785477704677775760577-----88989999997699
Q ss_pred EEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC---CCCHHHCCCEE-EEEE
Q ss_conf 3999933155423117711556655406001681332010352364427999934865---54413117247-9982
Q gi|254780270|r 435 PLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL---NIPLPLMDRME-IIRI 507 (820)
Q Consensus 435 pv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~---~i~~~l~drme-~i~~ 507 (820)
+|+++||||+++...+ .+++.+|+.--+. .....++.+|++.|.. .+..++.+|+. .|.+
T Consensus 86 ~vl~iDEi~~l~~~~~----~~~~~~l~~~~~~---------~~~~~~~~vI~~tn~~~~~~~~~~~~~R~~~~i~~ 149 (151)
T cd00009 86 GVLFIDEIDSLSRGAQ----NALLRVLETLNDL---------RIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred CEEEEECHHHCCHHHH----HHHHHHHHHHCCC---------CCCCCCEEEEEEECCCCCCCHHHHHHCCCCEEEEC
T ss_conf 8698201665599999----9999999871575---------40678889999528998868377642559869863
No 49
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.1e-11 Score=107.39 Aligned_cols=213 Identities=19% Similarity=0.323 Sum_probs=143.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------C------EEEEECCCCCCH
Q ss_conf 652011689999999999998424446735998605656502799999977088-------2------499861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------Q------YVRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------~------f~~islgg~~d~ 405 (820)
+|.-|-+.|...+-.. +..+.-+..++|+||+||||||.|+.+|+||+- | +..|.-|..-|.
T Consensus 16 ~dvvgQ~~v~~~L~n~-----i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv 90 (541)
T PRK05563 16 EDVVGQEHITTTLKNQ-----IINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDV 90 (541)
T ss_pred HHHCCCHHHHHHHHHH-----HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 6624849999999999-----98499320453038799589999999999957999888985751488999856898873
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 883563200145671289999983--278873999933155423117711556655406001681332010352364427
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
-||.+-+.+=|.-.- .|++..+- +...--|+++||++-|+.+ ..+|||-.|. -| -++|
T Consensus 91 ~Eidaas~~gvd~iR-~~~~~~~~~p~~~~~Kv~IiDEvhmls~~----a~nallKtlE-------------eP--p~~~ 150 (541)
T PRK05563 91 IEIDAASNNGVDDIR-EIIENVKYPPQEGKYKVYIMDEVHMLSQG----AVNAFLKTLE-------------EP--PSNV 150 (541)
T ss_pred EEECCCCCCCHHHHH-HHHHHCEECCCCCCEEEEEEECCCCCCHH----HHHHHHHHHH-------------CC--CCCC
T ss_conf 662444447889999-99976104876787059999772338999----9999999985-------------48--7775
Q ss_pred EEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999348655-441311724799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 484 MFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
.||+-.++.+ ||++++.|-..+.+..-+..+-..- +.+++ ..+.+.++++|+..|.+. -+.|+|+--
T Consensus 151 ~Filatte~~ki~~tI~SRcq~f~f~~i~~~~i~~~-----L~~I~-----~~E~i~~~~~al~lIa~~--s~GsmRDAl 218 (541)
T PRK05563 151 IFILATTDPQKLPITILSRCQRFDFKRIKVKDIFKR-----LRKIV-----EEQGIFADDKSLNLIARM--SDGAMRDAL 218 (541)
T ss_pred EEEEECCCCCCCCHHHHHHEEEEEEEECCHHHHHHH-----HHHHH-----HHCCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf 699976984427455674213577543899999999-----99999-----984999878999999974--599778899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 879999898765421178520127967867530520
Q gi|254780270|r 563 RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
-.+..+.- + +. -.|+.+++.+.||.-
T Consensus 219 slLdQ~is-----~--~~---~~it~~~v~~~lG~~ 244 (541)
T PRK05563 219 SILDQAIS-----M--GD---GKVDYDDVVSMLGLV 244 (541)
T ss_pred HHHHHHHH-----H--CC---CCCCHHHHHHHHCCC
T ss_conf 99999998-----3--59---986699999996899
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.41 E-value=4.3e-11 Score=102.81 Aligned_cols=179 Identities=30% Similarity=0.425 Sum_probs=130.9
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCC
Q ss_conf 66520116899999999999984244467359986056565027999999770882499861888888883563200145
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~g 417 (820)
=+|-.|-+++|+++-=|+.--+.++..-. .++|+||||+||||||.-||+-||-.+...| |.+-+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lD-HvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-Gp~le------------- 89 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALD-HVLLFGPPGLGKTTLAHIIANELGVNLKITS-GPALE------------- 89 (332)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEECC-CCCCC-------------
T ss_conf 88851839999999999999984498767-4786479987688899999998567737636-62015-------------
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECC-------CCCCCCCEEEEEECC
Q ss_conf 6712899999832788739999331554231177115566554060016813320103-------523644279999348
Q gi|254780270|r 418 SMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE-------VEYDLSDVMFIMTAN 490 (820)
Q Consensus 418 a~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~-------~~~dls~v~fi~tan 490 (820)
.||-+...|-... .|-|+++|||-.++.. --|+|=|.--+-..|--++ +..||....+|----
T Consensus 90 -K~gDlaaiLt~Le-~~DVLFIDEIHrl~~~--------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 90 -KPGDLAAILTNLE-EGDVLFIDEIHRLSPA--------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -CHHHHHHHHHCCC-CCCEEEEEHHHHCCHH--------HHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECC
T ss_conf -7265999986398-6776777255314742--------89896467531057789724875534763799813751013
Q ss_pred CCC-CCHHHCCCEEEE-EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 655-441311724799-8258786899989998608989986257813132289999999731
Q gi|254780270|r 491 TLN-IPLPLMDRMEII-RIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 491 ~~~-i~~~l~drme~i-~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
-.. ++.||+||.-++ ++.-|+.+|=..|.+++- ..-++.+++++...|...
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a----------~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA----------KILGIEIDEEAALEIARR 212 (332)
T ss_pred CCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHH----------HHHCCCCCHHHHHHHHHH
T ss_conf 46645633688628604540588899999999888----------873877685799999986
No 51
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.6e-11 Score=106.11 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=127.5
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-------------EEEECCCCCCH
Q ss_conf 65201168999999999999842444673599860565650279999997708824-------------99861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-------------VRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-------------~~islgg~~d~ 405 (820)
+|.-|.+.++..+...+ ....-+..+.|.||+||||||.|+..|++|+-+- ..|.-|...|.
T Consensus 15 ~dvvGQe~i~~~L~nal-----~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~g~~~Dv 89 (557)
T PRK07270 15 DEMVGQEVVATTLKQAV-----ESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITNGSLEDV 89 (557)
T ss_pred HHHCCHHHHHHHHHHHH-----HCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 67148199999999999-----8599540442108998689999999999957999899998887779999875899974
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 8835632001456712899999832------7887399993315542311771155665540600168133201035236
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~d 479 (820)
-||.+-...=|. -|..++.. ...--|+++||.|.|+.+ -++|||..|. -|-
T Consensus 90 iEidaas~~gVd-----~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~~----A~NALLKtLE-------------EPP- 146 (557)
T PRK07270 90 IEIDAASNNGVD-----EIRDIRDKSTYAPSRATYKVYIIDEVHMLSTG----AFNALLKTLE-------------EPT- 146 (557)
T ss_pred EEECCCCCCCHH-----HHHHHHHHHCCCCCCCCEEEEEECCHHHCCHH----HHHHHHHHHH-------------CCC-
T ss_conf 873477767889-----99999998423877788389997144534999----9998999852-------------899-
Q ss_pred CCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 44279999348655-44131172479982587868999899986089899862578131322899999997317741023
Q gi|254780270|r 480 LSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558 (820)
Q Consensus 480 ls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv 558 (820)
.+++||...|+.+ ||++++.|--.+++..-+.++-+.- +..++ +.+.+.++++++..|.+. -+.|+
T Consensus 147 -~~~vFIL~Ttep~kIl~TI~SRCQrf~F~~i~~~~i~~~-----L~~I~-----~~E~i~~~~~aL~~Ia~~--a~G~m 213 (557)
T PRK07270 147 -ENVVFILATTELHKIPATILSRVQRFEFKSIKTKAIREH-----LAWIL-----DKEGISFEVEALNLIARR--AEGGM 213 (557)
T ss_pred -CCEEEEEEECCHHHCCHHHHHHHHHCCCCCCCHHHHHHH-----HHHHH-----HHCCCCCCHHHHHHHHHH--CCCCH
T ss_conf -876999984994759288874300010888999999999-----99999-----983998699999999997--79968
Q ss_pred HHHHHHHHHH
Q ss_conf 4788879999
Q gi|254780270|r 559 RSFERALMKI 568 (820)
Q Consensus 559 R~l~r~i~~i 568 (820)
|+-.-.+...
T Consensus 214 RdAlsiLdQ~ 223 (557)
T PRK07270 214 RDALSILDQA 223 (557)
T ss_pred HHHHHHHHHH
T ss_conf 7899999999
No 52
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.38 E-value=1e-12 Score=115.14 Aligned_cols=117 Identities=26% Similarity=0.404 Sum_probs=82.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCC--CCCC---CCCHHHHHHHHHCCCCCEEEEEECHH
Q ss_conf 998605656502799999977088249986188888888356320--0145---67128999998327887399993315
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRR--TYIG---SMPGRIIQSLKRAKRSNPLLLLDEID 443 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~--ty~g---a~pg~ii~~l~~~~~~npv~~ldeid 443 (820)
+.|.||||||||++++.+|+++|++|+||++.--.+.+++.|.-. .--| -.||.+. .-++++|||+
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~~~Dl~G~~~~~~~~~~~~~~~G~l~---------~~vl~lDEin 72 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDITGTEVYDQKTREFEFRPGPIF---------ANVLLADEIN 72 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCC---------CCCEEEEHHH
T ss_conf 8789899876999999999995998168883377670003684542378740898457310---------3705640120
Q ss_pred HHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC------CCCHHHCCCE
Q ss_conf 5423117711556655406001681332010352364427999934865------5441311724
Q gi|254780270|r 444 KMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL------NIPLPLMDRM 502 (820)
Q Consensus 444 k~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~------~i~~~l~drm 502 (820)
..+.+- -++||++++--| -...+.-+.+|- .+.+|||.|.. ..|++|+||.
T Consensus 73 ~a~~~v----~~~Ll~~l~er~-v~~~g~~~~~p~---~f~viAt~NP~e~~G~~~L~~al~dRF 129 (131)
T pfam07726 73 RAPPKT----QSALLEAMQERQ-VTIGGETHPLPE---PFFVLATQNPIEQEGTYPLPEAQLDRF 129 (131)
T ss_pred CCCHHH----HHHHHHHHHCEE-EEECCEEEECCC---CEEEEECCCCCCCCCCEECCHHHHCCC
T ss_conf 399899----999997632649-977998852799---849997169875557644998896561
No 53
>KOG0738 consensus
Probab=99.38 E-value=1.9e-11 Score=105.47 Aligned_cols=228 Identities=24% Similarity=0.388 Sum_probs=144.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCC----CCC--CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
Q ss_conf 6520116899999999999984244----467--3599860565650279999997708824998618888888835632
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIK----NKG--LILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~----~~g--~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~ 412 (820)
.|.-||+++|+-+-|-.-.-.+-|. ..- .-++++||||+|||-|||.+|.--|--|+-||-.-+ .|--||-+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl--tSKwRGeS 289 (491)
T KOG0738 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL--TSKWRGES 289 (491)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHH--HHHHCCCH
T ss_conf 7631649999999988754442488874244653000556799974789999998861672787402456--55532526
Q ss_pred CCCCCCCCHHHHHHHHH-C-CCCCEEEEEECHHHHHHHCCCC---H-H-----HHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 00145671289999983-2-7887399993315542311771---1-5-----566554060016813320103523644
Q gi|254780270|r 413 RTYIGSMPGRIIQSLKR-A-KRSNPLLLLDEIDKMGSDLRGD---P-S-----AALLEVLDPAQNSSFVDHYLEVEYDLS 481 (820)
Q Consensus 413 ~ty~ga~pg~ii~~l~~-~-~~~npv~~ldeidk~~~~~~gd---p-~-----~allevldp~qn~~f~d~y~~~~~dls 481 (820)
- +||.-|-. | ...--+|++||||-+.+. ||. - | |-||--+|--||.. +.|
T Consensus 290 E--------KlvRlLFemARfyAPStIFiDEIDslcs~-RG~s~EHEaSRRvKsELLvQmDG~~~t~----------e~~ 350 (491)
T KOG0738 290 E--------KLVRLLFEMARFYAPSTIFIDEIDSLCSQ-RGGSSEHEASRRVKSELLVQMDGVQGTL----------ENS 350 (491)
T ss_pred H--------HHHHHHHHHHHHHCCCEEEHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCC----------CCC
T ss_conf 9--------99999999998748853533567788725-7986503678888889999863344444----------565
Q ss_pred CEEEEEECCCC--CCCHHHCCCEEE-EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC-----
Q ss_conf 27999934865--544131172479-9825878689998999860898998625781313228999999973177-----
Q gi|254780270|r 482 DVMFIMTANTL--NIPLPLMDRMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFT----- 553 (820)
Q Consensus 482 ~v~fi~tan~~--~i~~~l~drme~-i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt----- 553 (820)
|+.|+.-|-.+ +|+++|+-|+|- |.+|=-..+ ++.-||...+....+.+ .+.-+.|-...+.|+
T Consensus 351 k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~-----~R~~Li~~~l~~~~~~~---~~~~~~lae~~eGySGaDI~ 422 (491)
T KOG0738 351 KVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAE-----ARSALIKILLRSVELDD---PVNLEDLAERSEGYSGADIT 422 (491)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCHH-----HHHHHHHHHHCCCCCCC---CCCHHHHHHHHCCCCHHHHH
T ss_conf 16999843689820579999987630331287878-----99999997623566888---75699999985688737799
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHC
Q ss_conf ---4102347888799998987654211785201279678675305
Q gi|254780270|r 554 ---HEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLG 596 (820)
Q Consensus 554 ---~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg 596 (820)
|||-+--+.|.|..+-+.-.+.+..+.-. .-++..+.++.|.
T Consensus 423 nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~ 467 (491)
T KOG0738 423 NVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALR 467 (491)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CCCCHHHHHHHHH
T ss_conf 99999999999999724791776443231434-5651565999999
No 54
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.9e-11 Score=105.56 Aligned_cols=213 Identities=19% Similarity=0.248 Sum_probs=140.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-------------EEEECCCCCCH
Q ss_conf 65201168999999999999842444673599860565650279999997708824-------------99861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-------------VRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-------------~~islgg~~d~ 405 (820)
+|..|.+.|.+.+-.. +..+.-+..+.|.||+||||||+|+.+|++|+-.. ..|.-|.-.|.
T Consensus 16 ~dvvGQe~vv~~L~na-----i~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~Dv 90 (560)
T PRK06647 16 NSLEGQDFVVETLKHS-----IEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSLDV 90 (560)
T ss_pred HHHCCCHHHHHHHHHH-----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 4403949999999999-----97499774366328998789999999999965999999888878878888745999875
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHC--CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 8835632001456712899999832--78873999933155423117711556655406001681332010352364427
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRA--KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~--~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
-||.|-+.+-|.-.- .|++....+ ...--|+++||.|.|+.+ .++|||-.|. -|= +++
T Consensus 91 iEidaasn~~VddIR-~l~e~v~~~P~~~~yKV~IIDEahmLt~~----A~NALLKtLE-------------EPP--~~~ 150 (560)
T PRK06647 91 IEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNS----AFNALLKTIE-------------EPP--PYI 150 (560)
T ss_pred EEECCCCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHCCHH----HHHHHHHHHH-------------CCC--CCE
T ss_conf 764364548889999-99998632876687069996465655999----9999999863-------------488--755
Q ss_pred EEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999348655-441311724799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 484 MFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
+||+..|+.+ ||++.+.|--.+.+..-+.++-..- +.+++ +.+.+.++++|+..|... -+.++|+--
T Consensus 151 ~FILaTte~~KI~~TI~SRCQ~f~Fk~i~~~~I~~~-----L~~I~-----~~E~i~~e~~AL~lIa~~--a~Gs~RDal 218 (560)
T PRK06647 151 VFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYEM-----LKKVC-----LEDDIKYEDEALKWIAYK--SGGSVRDAY 218 (560)
T ss_pred EEEEECCCHHHCHHHHHHHHEEEECCCCCHHHHHHH-----HHHHH-----HHCCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf 999977994768489996510410555999999999-----99999-----867988799999999997--789588899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 879999898765421178520127967867530520
Q gi|254780270|r 563 RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
-.+..+.... .-.|+.+++.+.||.-
T Consensus 219 slldq~i~~~----------~~~i~~~~v~~~lG~~ 244 (560)
T PRK06647 219 TLFDQIVSFS----------NSDITLEQIRSKMGLT 244 (560)
T ss_pred HHHHHHHHCC----------CCCCCHHHHHHHHCCC
T ss_conf 9999999607----------9977899999986898
No 55
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.9e-11 Score=105.55 Aligned_cols=211 Identities=23% Similarity=0.333 Sum_probs=141.8
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE--------------EEEECCCCCCH
Q ss_conf 5201168999999999999842444673599860565650279999997708824--------------99861888888
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY--------------VRMSLGGVYDE 405 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f--------------~~islgg~~d~ 405 (820)
|.-|.+.|...+...+ ..+.-+..+.|.||+||||||+|+.+|++|+-.. ..|.-|.-.|.
T Consensus 18 dvVGQ~~vv~~L~nai-----~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~DV 92 (462)
T PRK06305 18 EILGQDAVVTVLKNAL-----RFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLDV 92 (462)
T ss_pred HHCCCHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 6049099999999999-----84997623430389985999999999999679999888898876688899863899986
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CCCCCCEEEEECCCCCCCCC
Q ss_conf 883563200145671289999983--278873999933155423117711556655406-00168133201035236442
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PAQNSSFVDHYLEVEYDLSD 482 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevld-p~qn~~f~d~y~~~~~dls~ 482 (820)
-||.+-..+=|.-+- .|++...- +...--|+++||.|.|+.+ -.+|||..|. |- ++
T Consensus 93 iEiDaAs~~gVddIR-el~e~v~~~P~~~~yKVyIIDEvhmLs~~----AfNALLKtLEEPP----------------~~ 151 (462)
T PRK06305 93 IEIDGASHRGIEDIR-QINETVLFTPSKSQYKIYIIDEVHMLTKE----AFNSLLKTLEEPP----------------QH 151 (462)
T ss_pred EEECCCCCCCHHHHH-HHHHHHCCCCCCCCEEEEEEECHHHCCHH----HHHHHHHHHHCCC----------------CC
T ss_conf 864355344668999-99977100886775059998152117999----9999999861898----------------77
Q ss_pred EEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 79999348655-44131172479982587868999899986089899862578131322899999997317741023478
Q gi|254780270|r 483 VMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSF 561 (820)
Q Consensus 483 v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l 561 (820)
|.||+..++.+ ||++.+.|--.+.+..-+.++-.. .++.. .+.+.+.++++|+..|.+. -+.++|+-
T Consensus 152 v~FILaTTe~~KIp~TIlSRCQrf~F~~i~~~~I~~---------~L~~I-~~~E~i~~e~~AL~lIA~~--a~GsmRDA 219 (462)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIID---------KLALI-AQQDGIETSREALLPIARA--AQGSLRDA 219 (462)
T ss_pred EEEEEEECCHHHCCHHHHHHHHEEECCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHH
T ss_conf 499998188142854787654023325799999999---------99999-9983998599999999998--58958789
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 8879999898765421178520127967867530520
Q gi|254780270|r 562 ERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 562 ~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
.-.+..+.. +. .-.|+.+++.+.||.-
T Consensus 220 lslLDQ~i~-----~~-----~~~it~~~V~~~lG~v 246 (462)
T PRK06305 220 ESLYDYVVG-----LF-----PKSLSPDTVAKALGLL 246 (462)
T ss_pred HHHHHHHHH-----HC-----CCCCCHHHHHHHHCCC
T ss_conf 999999998-----47-----9986899999986899
No 56
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=2e-10 Score=97.70 Aligned_cols=209 Identities=20% Similarity=0.316 Sum_probs=137.5
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-------------EEEECCCCCCH
Q ss_conf 65201168999999999999842444673599860565650279999997708824-------------99861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-------------VRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-------------~~islgg~~d~ 405 (820)
+|..|.+.|+..+... +..+.-+...+|.||+||||||+|+..|+||+-.. ..|.-|...|.
T Consensus 16 ~dvvGQ~~v~~~L~na-----i~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~Dv 90 (563)
T PRK06674 16 EDVVGQEHVTKTLQNA-----LLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDV 90 (563)
T ss_pred HHHCCHHHHHHHHHHH-----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 5524809999999999-----98499650343128998689999999999857999999887766878999855899877
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHH------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 883563200145671289999983------27887399993315542311771155665540600168133201035236
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKR------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~d 479 (820)
-||.+-..+=|. . |+.+++ ....--|+++||.+.|+.+ -++|||..|. -|
T Consensus 91 iEiDaasn~gVd----~-IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~----A~NALLKtLE-------------EP-- 146 (563)
T PRK06674 91 LEIDAASNNGVD----E-IRDIRDKVKFAPSAVEYKVYIIDEVHMLSIG----AFNALLKTLE-------------EP-- 146 (563)
T ss_pred EEECCCCCCCHH----H-HHHHHHHHCCCCCCCCEEEEEEECHHHCCHH----HHHHHHHHHH-------------CC--
T ss_conf 985255557879----9-9999998264886787379998545637999----9999999863-------------88--
Q ss_pred CCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 44279999348655-44131172479982587868999899986089899862578131322899999997317741023
Q gi|254780270|r 480 LSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558 (820)
Q Consensus 480 ls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv 558 (820)
=++|+||+..++.+ ||+..+.|--...+..-+.++-+.- +..++ ..+.+.++++++..|.+. -+.|+
T Consensus 147 P~~viFILaTtep~ki~~TI~SRCQrf~F~ri~~~~i~~r-----L~~I~-----~~E~i~~~~~aL~~Ia~~--a~Gsm 214 (563)
T PRK06674 147 PGHVIFILATTEPHKIPPTIISRCQRFDFRRISVNDIVER-----LSTVV-----TNEGTQVEDEALQIIARA--ADGGM 214 (563)
T ss_pred CCCEEEEEECCCHHHCCHHHHHHHEEEECCCCCHHHHHHH-----HHHHH-----HHCCCCCCHHHHHHHHHH--CCCCH
T ss_conf 7564999965994758478873310312788999999999-----99999-----984999878899999997--69978
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 4788879999898765421178520127967867530520
Q gi|254780270|r 559 RSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 559 R~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
|+---.+..+.... . -.||.+++.+.||.-
T Consensus 215 RDAlsiLdQ~~s~~-------~---~~i~~~~v~~~lG~~ 244 (563)
T PRK06674 215 RDALSLLDQAISFS-------D---ERVTTEDVLAVTGAV 244 (563)
T ss_pred HHHHHHHHHHHHHC-------C---CCCCHHHHHHHHCCC
T ss_conf 89999999999715-------9---976899999986899
No 57
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.8e-10 Score=98.06 Aligned_cols=212 Identities=20% Similarity=0.309 Sum_probs=135.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------------EEEEECCCCCCH
Q ss_conf 6520116899999999999984244467359986056565027999999770882-------------499861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------------YVRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-------------f~~islgg~~d~ 405 (820)
.+..|.+.+++.+... +..+.-+....|+||+||||||+|+.+|++|+-. +..+.-|.-.|-
T Consensus 16 ~eIIGQe~iv~~L~nA-----I~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~Dv 90 (613)
T PRK05896 16 KQIIGQELIKKILVNA-----ILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (613)
T ss_pred HHHCCCHHHHHHHHHH-----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 5523829999999999-----98499762277558998488999999999966999999998888878999856999986
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 883563200145671289999983--278873999933155423117711556655406001681332010352364427
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
-||.+...+-|..+- .+++.+.. ....--|+++||.|.|+.. .++|||-.|. -|- .+|
T Consensus 91 iEIdaasn~gIDeIR-eLie~~~~~P~~gkyKV~IIDEah~Ln~~----AaNALLKtLE-------------EPP--~~v 150 (613)
T PRK05896 91 VELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTS----AWNALLKTLE-------------EPP--KHV 150 (613)
T ss_pred EEEECCCCCCHHHHH-HHHHHHCCCCCCCCCEEEEECCHHHCCHH----HHHHHHHHCC-------------CCC--CCC
T ss_conf 884065557889999-99997085875799459998162217999----9999998534-------------898--783
Q ss_pred EEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999348655-441311724799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 484 MFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
+||+..++.+ ||++.+.|--.+.+..-+..+=.. .++.. .+.+.+.++++|+..|.+. -+.++|+--
T Consensus 151 iFIL~Ttep~KLLpTIlSRCQrf~Fkri~~~~I~~---------~L~~I-~~kE~i~ie~~AL~~Ia~~--adGs~RDAl 218 (613)
T PRK05896 151 VFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQE---------LLKSI-AKKEKIKIEDNAIDKIADL--ADGSLRDGL 218 (613)
T ss_pred EEEEEECCHHHCCHHHHHCCCCEECCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf 79998288154937664035500178899899999---------99999-9973998789999999997--688487898
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCC
Q ss_conf 87999989876542117852012796786753052
Q gi|254780270|r 563 RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGV 597 (820)
Q Consensus 563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~ 597 (820)
..+..+.-... -.||.+++.+.+|.
T Consensus 219 slLdQ~~~~~~----------~~it~~~v~~~~g~ 243 (613)
T PRK05896 219 SILDQLSTFKN----------KKIDIEDINKTFGL 243 (613)
T ss_pred HHHHHHHHHCC----------CCCCHHHHHHHHCC
T ss_conf 89999998356----------88629999999677
No 58
>KOG0730 consensus
Probab=99.32 E-value=2.2e-10 Score=97.42 Aligned_cols=221 Identities=22% Similarity=0.340 Sum_probs=137.4
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHH--------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
Q ss_conf 766520116899999999999984--------244467359986056565027999999770882499861888888883
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMR--------VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADI 408 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~--------~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i 408 (820)
=.+|.=|||++|+.+-|-+ .+-+ .+-....-++|+||||+|||++||.+|+.-+-+|..|+.--+..
T Consensus 432 ~W~dIGGlE~lK~elq~~V-~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s---- 506 (693)
T KOG0730 432 SWDDIGGLEELKRELQQAV-EWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS---- 506 (693)
T ss_pred CHHHCCCHHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHH----
T ss_conf 8220457899999999998-61665659998725788754777789986247899998646358726415789987----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEECHHHHHHHCCCCHH-------HHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 56320014567128999998327-88739999331554231177115-------56655406001681332010352364
Q gi|254780270|r 409 RGHRRTYIGSMPGRIIQSLKRAK-RSNPLLLLDEIDKMGSDLRGDPS-------AALLEVLDPAQNSSFVDHYLEVEYDL 480 (820)
Q Consensus 409 ~gh~~ty~ga~pg~ii~~l~~~~-~~npv~~ldeidk~~~~~~gdp~-------~allevldp~qn~~f~d~y~~~~~dl 480 (820)
-|+|-----|=+...+|. +.-.|++|||||-++..--|+-. |.||.-+|- +. .+
T Consensus 507 -----k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG------------~e-~~ 568 (693)
T KOG0730 507 -----KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG------------LE-AL 568 (693)
T ss_pred -----HHCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC------------CC-CC
T ss_conf -----7518258999999999862698377446666666304787551489999999987004------------10-14
Q ss_pred CCEEEEEECCCCC-CCHHHCC--CE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 4279999348655-4413117--24-799825878689998999860898998625781313228999999973177410
Q gi|254780270|r 481 SDVMFIMTANTLN-IPLPLMD--RM-EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEA 556 (820)
Q Consensus 481 s~v~fi~tan~~~-i~~~l~d--rm-e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~Ea 556 (820)
.+|+.|+--|-.+ |+++|+. |+ .+|.++---.+-..+|.+.| .++.-+.+. +. +++|.+.-..=+
T Consensus 569 k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~-----~kkmp~~~~-vd-----l~~La~~T~g~S 637 (693)
T KOG0730 569 KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC-----AKKMPFSED-VD-----LEELAQATEGYS 637 (693)
T ss_pred CCEEEEECCCCHHHCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHH-----HHCCCCCCC-CC-----HHHHHHHHCCCC
T ss_conf 7089995058810126977598653305751583478899999999-----733999865-56-----999999854677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHC
Q ss_conf 2347888799998987654211785201279678675305
Q gi|254780270|r 557 GVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLG 596 (820)
Q Consensus 557 GvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg 596 (820)
| ..|..+|+.+++--+...-..-.|+..+..+.|.
T Consensus 638 G-----Ael~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~ 672 (693)
T KOG0730 638 G-----AEIVAVCQEAALLALRESIEATEITWQHFEEALK 672 (693)
T ss_pred H-----HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 3-----8999999999999998752654344899999998
No 59
>KOG0736 consensus
Probab=99.30 E-value=1.8e-10 Score=98.20 Aligned_cols=147 Identities=24% Similarity=0.426 Sum_probs=106.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC-CCCCEEEEEECHH
Q ss_conf 673599860565650279999997708824998618888888835632001456712899999832-7887399993315
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA-KRSNPLLLLDEID 443 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~-~~~npv~~ldeid 443 (820)
.-+..+|.|+||+|||...+..|+-||+.++.++.--+. ++-++|--| +..+...+| .|.+.|++|--.|
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~--~~s~~~~et-------kl~~~f~~a~~~~pavifl~~~d 500 (953)
T KOG0736 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELV--AESASHTET-------KLQAIFSRARRCSPAVLFLRNLD 500 (953)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHH--HCCCCHHHH-------HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 553799867999875799999999838725701389886--436331378-------99999998752686289872242
Q ss_pred HHHHHCCCCHHHHHHHHCCCC-CCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHHCCC-EEEEEECCCCHHHHHHHHH
Q ss_conf 542311771155665540600-1681332010352364427999934865-544131172-4799825878689998999
Q gi|254780270|r 444 KMGSDLRGDPSAALLEVLDPA-QNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPLMDR-MEIIRIAGYTEEEKLQIAK 520 (820)
Q Consensus 444 k~~~~~~gdp~~allevldp~-qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l~dr-me~i~~~~y~~~ek~~i~~ 520 (820)
-++-+..|.-..-++-++--. +|. +++|+--.++||||.++. +||+-.+.- .+.|+++.-..+|..+|.+
T Consensus 501 vl~id~dgged~rl~~~i~~~ls~e-------~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736 501 VLGIDQDGGEDARLLKVIRHLLSNE-------DFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 4553377744277999999997202-------356779965999962530239878987526521377888788999999
Q ss_pred HHHHHHH
Q ss_conf 8608989
Q gi|254780270|r 521 NHLVKKV 527 (820)
Q Consensus 521 ~~l~p~~ 527 (820)
-|+--..
T Consensus 574 ~y~~~~~ 580 (953)
T KOG0736 574 WYLNHLP 580 (953)
T ss_pred HHHHCCC
T ss_conf 9983065
No 60
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=6e-11 Score=101.70 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=133.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------------EEEEECCCCCCH
Q ss_conf 6520116899999999999984244467359986056565027999999770882-------------499861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------------YVRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-------------f~~islgg~~d~ 405 (820)
.|..|.+.|++.+... +..+.-+..++|.||+||||||+|+.+|++|+-. +..+.-|.--|-
T Consensus 14 ~evIGQe~iv~~L~nA-----i~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g~hpDV 88 (523)
T PRK08451 14 DELIGQESVSKTLSLA-----LDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEGRHIDI 88 (523)
T ss_pred HHCCCCHHHHHHHHHH-----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 4404949999999999-----98599671587578998688999999999975999999898887888999864899985
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 8835632001456712899999832------7887399993315542311771155665540600168133201035236
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~d 479 (820)
-|+.+-..+-|.. |+.++.. ...--|+++||.|.|+.. .++|||-.|. -|=
T Consensus 89 iEiDaasn~gID~-----IReLie~~~~~P~~gryKV~IIDEah~Lt~~----A~NALLKTLE-------------EPP- 145 (523)
T PRK08451 89 IEMDAASNRGIDD-----IRNLIEQTKYKPSMARFKIFIIDEVHMLTKE----AFNALLKTLE-------------EPP- 145 (523)
T ss_pred EEECCCCCCCHHH-----HHHHHHHHCCCCCCCCEEEEEEECCCCCCHH----HHHHHHHHCC-------------CCC-
T ss_conf 5105533368999-----9999997235886797279998260304899----9999999703-------------898-
Q ss_pred CCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 44279999348655-44131172479982587868999899986089899862578131322899999997317741023
Q gi|254780270|r 480 LSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558 (820)
Q Consensus 480 ls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv 558 (820)
++|+||+..++.+ ||++.+.|--.+.+..-+..+-+. .++.. +..+.+.++++|+..|.+. -+.++
T Consensus 146 -~~vvFILaTTep~KLp~TIlSRCQ~f~Fk~I~~~~I~~---------~L~~I-~~~E~i~~e~~AL~~IA~~--a~Gsl 212 (523)
T PRK08451 146 -SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIIS---------HLKTI-LNKEGVSYEPEALEILARS--GSGSL 212 (523)
T ss_pred -CCCEEEEECCCHHHCHHHHHHHHHCCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCH
T ss_conf -78379997599476848887420311033799999999---------99999-9983998799999999997--78948
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCC
Q ss_conf 478887999989876542117852012796786753052
Q gi|254780270|r 559 RSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGV 597 (820)
Q Consensus 559 R~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~ 597 (820)
|+-.-.+....-.. .-.||.+++.+.||.
T Consensus 213 RDalslLdQ~i~~~----------~~~i~~~~v~~~lG~ 241 (523)
T PRK08451 213 RDTLTLLDQAIIFC----------KNAITESKVADMLGL 241 (523)
T ss_pred HHHHHHHHHHHHHC----------CCCCCHHHHHHHHCC
T ss_conf 68987999999847----------998779999998588
No 61
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.29 E-value=8.1e-10 Score=93.17 Aligned_cols=225 Identities=25% Similarity=0.341 Sum_probs=105.4
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------------------------
Q ss_conf 5201168999999999999842444673599860565650279999997708----------------------------
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG---------------------------- 391 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~---------------------------- 391 (820)
|..|.+.+| |-+|.-|- .|--|+|+||||+|||.+|+.+...|-
T Consensus 192 dv~Gq~~ak-raleIAAA-------GgHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~~~ 263 (506)
T PRK09862 192 DVVGQEQGK-RGLEITAA-------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred HHCCCHHHH-HHHHHHHC-------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 536979999-99999744-------6886598769994598999775123899898999999999987189877775466
Q ss_pred CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEE
Q ss_conf 8249986188888888356320014567128999998327887399993315542311771155665540-600168133
Q gi|254780270|r 392 RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFV 470 (820)
Q Consensus 392 r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~ 470 (820)
||| |-.--.....+-|-|-+ -..||-|-.| -|.|.+|||+-..+. .-||.| -|=.+...+
T Consensus 264 rPf-R~PHHs~S~~aliGGG~----~~~PGEISLA------H~GVLFLDElpEF~r--------~vLe~LRqPLE~g~I~ 324 (506)
T PRK09862 264 RPF-RSPHHSASLTAMVGGGA----IPGPGEISLA------HNGVLFLDELPEFER--------RTLDALREPIESGQIH 324 (506)
T ss_pred CCE-ECCCCCCCHHHHHCCCC----CCCCCCEEEC------CCCEEEECCHHCCCH--------HHHHHHHHHHCCCEEE
T ss_conf 850-37887654766637999----9999722213------575788455000688--------8999877622477599
Q ss_pred ----EEECCCCCCCCCEEE-----------------EEECC----CCC-CCHHHCCCEEE-EEECC--C-----------
Q ss_conf ----201035236442799-----------------99348----655-44131172479-98258--7-----------
Q gi|254780270|r 471 ----DHYLEVEYDLSDVMF-----------------IMTAN----TLN-IPLPLMDRMEI-IRIAG--Y----------- 510 (820)
Q Consensus 471 ----d~y~~~~~dls~v~f-----------------i~tan----~~~-i~~~l~drme~-i~~~~--y----------- 510 (820)
.+-+.+|-| .++ -||.. |.+ |+.||+||+.+ ++++- |
T Consensus 325 IsRa~~~~~~PA~---F~LVaAmNPCPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~e 401 (506)
T PRK09862 325 LSRTRAKITYPAR---FQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGE 401 (506)
T ss_pred EEECCCEEEECCH---HHHEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCC
T ss_conf 9966867986153---3111103788888899997778989999998656622130364799816899666632489898
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHC-CC----CCCCCCCHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ---8689998999860898998625-78----13132289999999731774-102347888799998987654211785
Q gi|254780270|r 511 ---TEEEKLQIAKNHLVKKVLTEHA-LK----QEECCISDGVLLDIIRLFTH-EAGVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 511 ---~~~ek~~i~~~~l~p~~~~~~~-~~----~~~~~~~~~~i~~ii~~Yt~-EaGvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
+..|++..|++--.-++-+-|+ ++ ...+.+++++...+-+-+++ .--.|...|.+ |+|+-++.=..
T Consensus 402 sS~~ir~rV~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riL-----rvARTIADL~g 476 (506)
T PRK09862 402 SSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLL-----KVARTIADIDQ 476 (506)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHCC
T ss_conf 8899999999999999985516565799899976549997899999999996595799999999-----99999985559
Q ss_pred CEECCCHHHHHHHHCCCCC
Q ss_conf 2012796786753052000
Q gi|254780270|r 582 TTVSINENNLQDYLGVPRY 600 (820)
Q Consensus 582 ~~~~i~~~~l~~~lg~~~~ 600 (820)
.-.|+.+++.+.|.-..+
T Consensus 477 -~~~i~~~Hi~eAl~yR~~ 494 (506)
T PRK09862 477 -SDIITRQHLQEAVSYRAI 494 (506)
T ss_pred -CCCCCHHHHHHHHHHHHH
T ss_conf -999998999999971767
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.1e-11 Score=100.35 Aligned_cols=215 Identities=22% Similarity=0.248 Sum_probs=141.8
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----------------EEEEECCCC
Q ss_conf 520116899999999999984244467359986056565027999999770882-----------------499861888
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-----------------YVRMSLGGV 402 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-----------------f~~islgg~ 402 (820)
|.-|.+.+...+-. .+..+.-++...|.||.||||||.|+-+|+||+-. +..|.-|--
T Consensus 22 ~liGQ~~~~~~l~n-----~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i~~~~~ 96 (507)
T PRK06645 22 ELQGQEVLVKVLSY-----TILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISFNNHNH 96 (507)
T ss_pred HHCCCHHHHHHHHH-----HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 62393999999999-----9973996634774587997889999999999679998888998888888767899865899
Q ss_pred CCHHHHCCCCCCCCCCCCHHHHHHHHHC--CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 8888835632001456712899999832--78873999933155423117711556655406001681332010352364
Q gi|254780270|r 403 YDEADIRGHRRTYIGSMPGRIIQSLKRA--KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 (820)
Q Consensus 403 ~d~~~i~gh~~ty~ga~pg~ii~~l~~~--~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl 480 (820)
.|.-||.+-++|=|.-+- .++...+-+ ...--|+++||++.+|.+. .+|||..|+ -|-
T Consensus 97 ~dv~EiDaas~~gv~~ir-~l~~~~~~~p~~~~~kv~iidE~hmls~~a----~nallktlE-------------epp-- 156 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIR-RIIESAEYKPLQGKHKIFIIDEVHMLSKGA----FNALLKTLE-------------EPP-- 156 (507)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHCCCCCCCCCEEEEEECCHHHCCHHH----HHHHHHHHH-------------CCC--
T ss_conf 985996378888889999-998635517876743589952142248999----999999742-------------786--
Q ss_pred CCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 4279999348655-441311724799825878689998999860898998625781313228999999973177410234
Q gi|254780270|r 481 SDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVR 559 (820)
Q Consensus 481 s~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR 559 (820)
++|.||+..++.+ ||.+.+.|--..++..-+.++-.. .++... +.+.+.++++|+..|.+. -|.+||
T Consensus 157 ~~~~Fi~atte~~kip~ti~srcq~f~~~~i~~~~i~~---------~l~~i~-~~E~~~~~~~al~~ia~~--a~Gs~R 224 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFK---------LLEYIT-KQENLKADIEALRIIAYK--SEGSAR 224 (507)
T ss_pred CCEEEEEECCCHHHCCHHHHHHCEEEEEECCCHHHHHH---------HHHHHH-HHCCCCCCHHHHHHHHHH--CCCCHH
T ss_conf 44389997485364837888543278754599799999---------999999-976877778999999985--599867
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 788879999898765421178520127967867530520
Q gi|254780270|r 560 SFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 560 ~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
+--..+... ++.. .+. .-.|+.+.+.+.||-.
T Consensus 225 Dalslldqa---i~~~--~~~--~~~I~~~~V~~MLGl~ 256 (507)
T PRK06645 225 DAVSILDQA---ASMS--AKS--DNIISPQVINQMLGLV 256 (507)
T ss_pred HHHHHHHHH---HHHH--CCC--CCCCCHHHHHHHHCCC
T ss_conf 899999999---9975--489--8702699999983899
No 63
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.28 E-value=7.1e-10 Score=93.60 Aligned_cols=227 Identities=17% Similarity=0.261 Sum_probs=139.0
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------------------------
Q ss_conf 5201168999999999999842444673599860565650279999997708----------------------------
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG---------------------------- 391 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~---------------------------- 391 (820)
+.-|.+.+|.-++ +...++.. --+.+.||||+|||.+|++++..|-
T Consensus 9 ~IvGQe~~K~AL~----laav~p~~--ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 9 AIVGQEEMKQAMV----LTAIDPGI--GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEVSSTT 82 (334)
T ss_pred HHCCCHHHHHHHH----HHHCCCCC--CEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 7649399999999----97727898--60899789986599999999972899511036755667742113343114555
Q ss_pred -----CCEEEEECCCCCC--------HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHH
Q ss_conf -----8249986188888--------888356320014567128999998327887399993315542311771155665
Q gi|254780270|r 392 -----RQYVRMSLGGVYD--------EADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALL 458 (820)
Q Consensus 392 -----r~f~~islgg~~d--------~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~all 458 (820)
.||+.+.+|-..| ++-++|-.+ -..||-|-.| .+.|.|+|||--+.. .-.++||
T Consensus 83 ~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~---~~~PGlLa~A------h~GVLylDEinll~~----~vld~Ll 149 (334)
T PRK13407 83 MVERPTPVIDLPLGATEDRVVGALDIERALTRGEK---AFEPGLLARA------NRGYLYIDEVNLLED----HIVDLLL 149 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CCCCCHHHHC------CCCEEEEECHHHCCH----HHHHHHH
T ss_conf 34489987678999998664474218888626987---7886054340------288678720533338----8999999
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--CCCHHHCCCEEE-EEECC-CCHHHHHHHHHHHHH----------
Q ss_conf 5406001681332010352364427999934865--544131172479-98258-786899989998608----------
Q gi|254780270|r 459 EVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--NIPLPLMDRMEI-IRIAG-YTEEEKLQIAKNHLV---------- 524 (820)
Q Consensus 459 evldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~i~~~l~drme~-i~~~~-y~~~ek~~i~~~~l~---------- 524 (820)
+++..-+|.-=++.+ .+.|. ++.++|+|+|-. .+.++|+||+-+ +++++ ...++.++|.++-+-
T Consensus 150 ~~~e~G~~~IeReg~-s~~~P-arF~LVatmNPeEg~Lrp~lLDRf~l~v~v~~~~~~~~r~eiv~r~~~~~~~~~~~~~ 227 (334)
T PRK13407 150 DVAQSGENVVEREGL-SIRHP-ARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVITRRDAYDADHDAFMA 227 (334)
T ss_pred HHHHCCCEEEEECCE-EEECC-CCCEEEEEECCCCCCCCHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 887169579997763-46036-6265898208887775989983610068714878877766889999986538799999
Q ss_pred ----------HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf ----------9899862578131322899999997317741023---478887999989876542117852012796786
Q gi|254780270|r 525 ----------KKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV---RSFERALMKIARKAVTKIVKNSDTTVSINENNL 591 (820)
Q Consensus 525 ----------p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv---R~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l 591 (820)
-++.+... .-.++.++++.+.++.. .+.+.|+ |---+ +-+..|..| -+.+. -.|+.++|
T Consensus 228 ~~~~e~~~l~~~i~~Ar~-~l~~v~~~d~~~~~~~~-~~~~~~~~g~Ra~i~-l~r~ARa~A--aL~Gr---~~V~~~dl 299 (334)
T PRK13407 228 KWGAEDMQLRGRILGARA-ALPQLKTPDTVLHDCAA-LCIALGSDGLRGELT-LLRAARAQA--AFEGA---ETVGRSHL 299 (334)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHH-HHHHHCCCCCHHHHH-HHHHHHHHH--HHCCC---CCCCHHHH
T ss_conf 889899999999999987-51146899999999999-999858987109999-999999999--97499---97899999
Q ss_pred HHHH
Q ss_conf 7530
Q gi|254780270|r 592 QDYL 595 (820)
Q Consensus 592 ~~~l 595 (820)
....
T Consensus 300 ~~aa 303 (334)
T PRK13407 300 RSVA 303 (334)
T ss_pred HHHH
T ss_conf 9999
No 64
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=3.1e-10 Score=96.32 Aligned_cols=190 Identities=20% Similarity=0.316 Sum_probs=129.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE----------EEEECCCCCCHHHH
Q ss_conf 65201168999999999999842444673599860565650279999997708824----------99861888888883
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY----------VRMSLGGVYDEADI 408 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f----------~~islgg~~d~~~i 408 (820)
+|.-|.+.|+..+..- +....-+....|+||.||||||+|+.+|+||+-.- +.-..|+-.|.-||
T Consensus 18 ~EVIGQe~Vv~tL~nA-----I~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~~s~DViEI 92 (718)
T PRK07133 18 DEIKGQDHIIETLKNI-----IKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFNNNLDIIEM 92 (718)
T ss_pred HHHCCCHHHHHHHHHH-----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEE
T ss_conf 4422859999999999-----97499750586238998688999999999967999999999770214304789873775
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC------CEEEEEECHHHHHHHCCCCHHHHHHHHCC-CCCCCCEEEEECCCCCCCC
Q ss_conf 5632001456712899999832788------73999933155423117711556655406-0016813320103523644
Q gi|254780270|r 409 RGHRRTYIGSMPGRIIQSLKRAKRS------NPLLLLDEIDKMGSDLRGDPSAALLEVLD-PAQNSSFVDHYLEVEYDLS 481 (820)
Q Consensus 409 ~gh~~ty~ga~pg~ii~~l~~~~~~------npv~~ldeidk~~~~~~gdp~~allevld-p~qn~~f~d~y~~~~~dls 481 (820)
.+-+.|-|.. |+.|++.=.. --|+++||.+.|+.. ..+|||-.|. |- +
T Consensus 93 DAASn~gVDd-----IReLie~v~y~P~~gkYKVyIIDEvHMLS~~----AfNALLKtLEEPP----------------~ 147 (718)
T PRK07133 93 DAASNNGVDE-----IRELRENVKNLPQISKYKIYIIDEVHMLSKS----AFNALLKTLEEPP----------------K 147 (718)
T ss_pred CCCCCCCHHH-----HHHHHHHHCCCCCCCCEEEEEEECCCCCCHH----HHHHHHHHHCCCC----------------C
T ss_conf 4556688899-----9999998255887787249999662007999----9999998502798----------------7
Q ss_pred CEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 279999348655-4413117247998258786899989998608989986257813132289999999731774102347
Q gi|254780270|r 482 DVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS 560 (820)
Q Consensus 482 ~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~ 560 (820)
+|.||+-..+.+ ||+..+.|.-...+..-+..+-.. .++.. +..+.+.++++|+..|.+. -+.|+|+
T Consensus 148 hvvFILaTTep~KIP~TIlSRCQrFdFkrI~~~~I~~---------~L~~I-~~kE~I~~e~eAL~lIA~~--a~GSmRD 215 (718)
T PRK07133 148 HVIFILATTDVQKIPLTILSRVQRFNFRRISEDVIVH---------QLENI-LEKEKIKYEKNALKLIASL--ASGSLRD 215 (718)
T ss_pred CCEEEEEECCHHHCCHHHHHCCEEEECCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHH
T ss_conf 8279997088254848774122033588899999999---------99999-9985997789999999997--6884888
Q ss_pred HHHHHHHHHH
Q ss_conf 8887999989
Q gi|254780270|r 561 FERALMKIAR 570 (820)
Q Consensus 561 l~r~i~~i~r 570 (820)
--..+..+.-
T Consensus 216 AlSlLDQv~~ 225 (718)
T PRK07133 216 ALSIADQVSI 225 (718)
T ss_pred HHHHHHHHHH
T ss_conf 9879999998
No 65
>KOG0733 consensus
Probab=99.27 E-value=1.2e-10 Score=99.39 Aligned_cols=193 Identities=26% Similarity=0.339 Sum_probs=122.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE----CCCCCCHHH
Q ss_conf 65201168999999999999842444-------6735998605656502799999977088249986----188888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKN-------KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMS----LGGVYDEAD 407 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~-------~g~il~l~gppgvGKts~~~sia~al~r~f~~is----lgg~~d~~~ 407 (820)
+|.=||++.=..+.|.+.. ...|+. ...-++|.||||+|||+||..||.-||-||..|| .+|+.-|+|
T Consensus 190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE 268 (802)
T KOG0733 190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE 268 (802)
T ss_pred HHCCCHHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCH
T ss_conf 5416738999999999988-528116866287799751644899864789999975212885485141465315575228
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHCCCCC-EEEEEECHHHHHHHCCC-------CHHHHHHHHCCCCCCCCE-EEEECCCCC
Q ss_conf 356320014567128999998327887-39999331554231177-------115566554060016813-320103523
Q gi|254780270|r 408 IRGHRRTYIGSMPGRIIQSLKRAKRSN-PLLLLDEIDKMGSDLRG-------DPSAALLEVLDPAQNSSF-VDHYLEVEY 478 (820)
Q Consensus 408 i~gh~~ty~ga~pg~ii~~l~~~~~~n-pv~~ldeidk~~~~~~g-------dp~~allevldp~qn~~f-~d~y~~~~~ 478 (820)
-+|=.-..+|...- +|+++||||-++..-.+ -..+-||.-+|-=-|..+ .|
T Consensus 269 -------------kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~------- 328 (802)
T KOG0733 269 -------------KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD------- 328 (802)
T ss_pred -------------HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------
T ss_conf -------------999999998736697599851100136440457889999999999985100256666899-------
Q ss_pred CCCCEEEEEECCCCC-CCHHHC-----CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 644279999348655-441311-----72479982587868999899986089899862578131322899999997317
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPLM-----DRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l~-----drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
.|+.|.+-|--+ +.++|| ||==.+.+|+-+..|+ ++-.+++...+.. .|+-.-|.++--.|
T Consensus 329 ---~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~-------IL~~~~~~lrl~g---~~d~~qlA~lTPGf 395 (802)
T KOG0733 329 ---PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREE-------ILRIICRGLRLSG---DFDFKQLAKLTPGF 395 (802)
T ss_pred ---CEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCHHHHHH-------HHHHHHHHCCCCC---CCCHHHHHHCCCCC
T ss_conf ---7699824789765587773256553235306896688999-------9999986277787---76899997518875
Q ss_pred --------CCCCHHHHHHHHH
Q ss_conf --------7410234788879
Q gi|254780270|r 553 --------THEAGVRSFERAL 565 (820)
Q Consensus 553 --------t~EaGvR~l~r~i 565 (820)
++|||.--++|.+
T Consensus 396 VGADL~AL~~~Aa~vAikR~l 416 (802)
T KOG0733 396 VGADLMALCREAAFVAIKRIL 416 (802)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 214199999999999999986
No 66
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.6e-09 Score=89.38 Aligned_cols=169 Identities=24% Similarity=0.326 Sum_probs=114.3
Q ss_pred HHHHHHCCCCCEEEEEECHHHHHHHC-CC--CHHH-----HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----
Q ss_conf 99998327887399993315542311-77--1155-----665540600168133201035236442799993486----
Q gi|254780270|r 424 IQSLKRAKRSNPLLLLDEIDKMGSDL-RG--DPSA-----ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT---- 491 (820)
Q Consensus 424 i~~l~~~~~~npv~~ldeidk~~~~~-~g--dp~~-----allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~---- 491 (820)
.|.-..+-..|.++++|||||+.... .| |++- -||-+..- .+..-+|=-+ .-.++|||++---
T Consensus 241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEG---stV~TKyG~V--kTdHILFIasGAFh~sK 315 (444)
T COG1220 241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEG---STVSTKYGPV--KTDHILFIASGAFHVAK 315 (444)
T ss_pred HHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCC---CEEECCCCCC--CCCEEEEEECCCEECCC
T ss_conf 999999988569089734667874378899886643201021031057---5443154440--14437887148200378
Q ss_pred -CC-CCHHHCCCEEE-EEECCCCHHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC------CCCCCHHH
Q ss_conf -55-44131172479-9825878689998999---8608989986257813132289999999731------77410234
Q gi|254780270|r 492 -LN-IPLPLMDRMEI-IRIAGYTEEEKLQIAK---NHLVKKVLTEHALKQEECCISDGVLLDIIRL------FTHEAGVR 559 (820)
Q Consensus 492 -~~-i~~~l~drme~-i~~~~y~~~ek~~i~~---~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~------Yt~EaGvR 559 (820)
.+ ||. |--|+-+ +++.+.|.++=..|-. +-|+.+-..-..-..-.+.|++++|..|.+- -|---|-|
T Consensus 316 PSDLiPE-LQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 316 PSDLIPE-LQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred HHHCCHH-HCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 1321766-627773488704489989999963760789999999973158348853799999999999855430001178
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 788879999898765421178520127967867530520
Q gi|254780270|r 560 SFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 560 ~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
-|.-.+.++.-.+..+--+-....++|+.+-+.+-||.-
T Consensus 395 RLhTvlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 395 RLHTVLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHH
T ss_conf 899999999987070587789975897589999999877
No 67
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.5e-10 Score=98.76 Aligned_cols=259 Identities=22% Similarity=0.305 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HC-CC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 688998776652011689999999999998----42-44-------4673599860565650279999997708824998
Q gi|254780270|r 330 LDFAIRILDQDHFGLEKVKERIIEYLAVQM----RV-IK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 330 l~~a~~iLd~~hyGl~~vK~rile~lav~~----~~-~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
-+..++.||+-.-|-+.+|.-+- .||.. ++ .. .|+ =++|+||-|.|||-||+..|+.|+-||.
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLs--VAVYNHYKRl~~~~~~~dvEL~KS-NILLiGPTGsGKTlLAqTLAk~LnVPFa-- 126 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLS--VAVYNHYKRLNNKEDNDDVELSKS-NILLIGPTGSGKTLLAQTLAKILNVPFA-- 126 (408)
T ss_pred HHHHHHHHHHHEECCHHHHCEEE--EEEEHHHHHHHCCCCCCCEEEEEC-CEEEECCCCCCHHHHHHHHHHHHCCCEE--
T ss_conf 69999986524326254310346--641068899860488776353203-1799888997577999999998489847--
Q ss_pred ECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC------CCEEEEEECHHHHHHHC-C----CCH-----HHHHHHHC
Q ss_conf 61888888883563200145671289999983278------87399993315542311-7----711-----55665540
Q gi|254780270|r 398 SLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR------SNPLLLLDEIDKMGSDL-R----GDP-----SAALLEVL 461 (820)
Q Consensus 398 slgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~------~npv~~ldeidk~~~~~-~----gdp-----~~allevl 461 (820)
+.|..-+.- --|||-----|++-|..+-- -..+|++|||||++.-. + -|. .-|||.++
T Consensus 127 ----iADATtLTE--AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKii 200 (408)
T COG1219 127 ----IADATTLTE--AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKII 200 (408)
T ss_pred ----ECCCCCHHH--CCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf ----514441210--66355008999999998764588888288599851025420578987234367358999999997
Q ss_pred C------CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHH--------------------------------------
Q ss_conf 6------00168133201035236442799993486554413--------------------------------------
Q gi|254780270|r 462 D------PAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLP-------------------------------------- 497 (820)
Q Consensus 462 d------p~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~-------------------------------------- 497 (820)
. |-|--.=+.|-==+.+|-|++||||----..+...
T Consensus 201 EGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLv 280 (408)
T COG1219 201 EGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLV 280 (408)
T ss_pred CCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 07510239998887984204887376346782440103999999862687424566445344441288998754868788
Q ss_pred -------HCCCEEEEE-ECCCCHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHH
Q ss_conf -------117247998-2587868999899---98608989986257813132289999999731-77410234788879
Q gi|254780270|r 498 -------LMDRMEIIR-IAGYTEEEKLQIA---KNHLVKKVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERAL 565 (820)
Q Consensus 498 -------l~drme~i~-~~~y~~~ek~~i~---~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i 565 (820)
+.-|+-||- +...+.+.-++|- +|-|+.+-.+-..+..-.+.|+++|+..|.+. ..|-.|-|.|.-.+
T Consensus 281 kFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~ 360 (408)
T COG1219 281 KFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSII 360 (408)
T ss_pred HCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 70883887266632646101599999999726517899999999644691699748999999999998433535799999
Q ss_pred HHHHHHHHHHHHCCC-CCEECCCHHHHHHHHCCCC
Q ss_conf 999898765421178-5201279678675305200
Q gi|254780270|r 566 MKIARKAVTKIVKNS-DTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 566 ~~i~r~~~~~~~~~~-~~~~~i~~~~l~~~lg~~~ 599 (820)
+.++..+-.++-..+ -..+.|+.+.+.....+..
T Consensus 361 E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p~l 395 (408)
T COG1219 361 EELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLL 395 (408)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCEE
T ss_conf 99999988527886785089976888478888727
No 68
>KOG0745 consensus
Probab=99.25 E-value=6.4e-10 Score=93.94 Aligned_cols=216 Identities=22% Similarity=0.351 Sum_probs=132.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC------CCCCEEEEEECH
Q ss_conf 99860565650279999997708824998618888888835632001456712899999832------788739999331
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA------KRSNPLLLLDEI 442 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~------~~~npv~~ldei 442 (820)
+.|+||-|.|||-||+.+|+.|+-||+--..--+. .--|||-----+|+.|-.. ++--.+++|||+
T Consensus 229 vLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLT--------QAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745 229 VLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLT--------QAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHH--------HCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEHH
T ss_conf 79977888764389999999708876873255220--------0553454299999999997257899882673887601
Q ss_pred HHHHHHCCC-----CH-----HHHHHHHC------CCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEE--
Q ss_conf 554231177-----11-----55665540------6001681332010352364427999934865544131172479--
Q gi|254780270|r 443 DKMGSDLRG-----DP-----SAALLEVL------DPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEI-- 504 (820)
Q Consensus 443 dk~~~~~~g-----dp-----~~allevl------dp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~-- 504 (820)
|||+....| |. .-|||.+| =|+-|..-.-.==.|.+|-+++||||+--..++....-.||+-
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~s 380 (564)
T KOG0745 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKS 380 (564)
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCHH
T ss_conf 24413676545444566266999999985262770267787778999858971366688803432356989887630000
Q ss_pred -------------------------------------------------------E-EECCCCHHHHHHHH---HHHHHH
Q ss_conf -------------------------------------------------------9-82587868999899---986089
Q gi|254780270|r 505 -------------------------------------------------------I-RIAGYTEEEKLQIA---KNHLVK 525 (820)
Q Consensus 505 -------------------------------------------------------i-~~~~y~~~ek~~i~---~~~l~p 525 (820)
| -+.+.+...=++|- ++-|+|
T Consensus 381 lGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~ 460 (564)
T KOG0745 381 LGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGK 460 (564)
T ss_pred CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHH
T ss_conf 15678887420011034667304677889998634632135526728771665257652426888899987355466899
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 899862578131322899999997317-7410234788879999898765421178520127967867
Q gi|254780270|r 526 KVLTEHALKQEECCISDGVLLDIIRLF-THEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQ 592 (820)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~i~~ii~~Y-t~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~ 592 (820)
+--+-.++..-++.|+.+|++.|.+.- .|-.|-|.|.-.++++.-.+..++-...-..+.|+.+.+.
T Consensus 461 Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~ 528 (564)
T KOG0745 461 QYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVK 528 (564)
T ss_pred HHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHC
T ss_conf 99998555774698669999999999876143467899999999764014578875479996178845
No 69
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.9e-10 Score=97.98 Aligned_cols=219 Identities=25% Similarity=0.376 Sum_probs=141.5
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
Q ss_conf 665201168999999999999842444-------6735998605656502799999977088249986188888888356
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKN-------KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~-------~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~g 410 (820)
=+|.=||++-.+.|-|-+-.--.+|.. ...-.+|+||||||||-|||.+|...+-.|.|++ .||+-
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv------gSElV- 222 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV------GSELV- 222 (406)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEC------CHHHH-
T ss_conf 65335889999999998403366888999749999971276689997588999998720586699942------19999-
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH-C----CCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 3200145671289999983278873-9999331554231-1----7711--55665540600168133201035236442
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD-L----RGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSD 482 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~-~----~gdp--~~allevldp~qn~~f~d~y~~~~~dls~ 482 (820)
.-|+|--+-.+=+...-|+..-| +|++||||-+++. + -||- .-.|||+|. |=..|-. ..+
T Consensus 223 --qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~--qlDGFD~--------~~n 290 (406)
T COG1222 223 --QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN--QLDGFDP--------RGN 290 (406)
T ss_pred --HHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCC--------CCC
T ss_conf --9983411699999999874149849998311223111136888850999999999998--6058897--------887
Q ss_pred EEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 79999348655-44131-----1724799825878689998999860898998625781313228999999973177410
Q gi|254780270|r 483 VMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEA 556 (820)
Q Consensus 483 v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~Ea 556 (820)
|=.|+--|-.+ .+++| +||. |++|--..+-+.+|.+-|- .++.+.+ ++.| +.++..-.--+
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRk--IEfplPd~~gR~~Il~IHt-----rkM~l~~-dvd~-----e~la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRK--IEFPLPDEEGRAEILKIHT-----RKMNLAD-DVDL-----ELLARLTEGFS 357 (406)
T ss_pred EEEEEECCCCCCCCHHHCCCCCCCCE--EECCCCCHHHHHHHHHHHH-----HHCCCCC-CCCH-----HHHHHHCCCCC
T ss_conf 68998558855557665088754530--1168989789999999876-----2146766-7699-----99987538995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 234788879999898765421178520127967867530
Q gi|254780270|r 557 GVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 557 GvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
| -.|.+||-.+..--+.... ..||.++..+..
T Consensus 358 G-----AdlkaictEAGm~AiR~~R--~~Vt~~DF~~Av 389 (406)
T COG1222 358 G-----ADLKAICTEAGMFAIRERR--DEVTMEDFLKAV 389 (406)
T ss_pred H-----HHHHHHHHHHHHHHHHHCC--CEECHHHHHHHH
T ss_conf 6-----7799999987599998604--733399999999
No 70
>KOG1051 consensus
Probab=99.24 E-value=4.2e-09 Score=87.75 Aligned_cols=164 Identities=26% Similarity=0.451 Sum_probs=120.9
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC-CC---CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 04158766-32210688998776652011689999999999998424-44---673599860565650279999997708
Q gi|254780270|r 317 GVPWDKKS-KTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVI-KN---KGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 317 ~lPW~~~t-~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~-~~---~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
.+|-...+ .+...+..-++.|.+..-|-+++=.-|-+- ++.-.. .. ..--+.|.||-|||||-+||..|+-+=
T Consensus 539 gip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~A--I~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F 616 (898)
T KOG1051 539 GIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAA--IRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF 616 (898)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 782144316678999999999975446637789999999--984320357888885899978884138999999999972
Q ss_pred ---CCEEEEECCCCCCHHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf ---824998618888888835632001456712-8999998327887399993315542311771155665540600168
Q gi|254780270|r 392 ---RQYVRMSLGGVYDEADIRGHRRTYIGSMPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNS 467 (820)
Q Consensus 392 ---r~f~~islgg~~d~~~i~gh~~ty~ga~pg-~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~ 467 (820)
--|+||.|+--...+..-|----|+|..-| ++-.++++ ..+.|||||||||.-. |-..-||.++|- -
T Consensus 617 gse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrr--rP~sVvLfdeIEkAh~----~v~n~llq~lD~---G 687 (898)
T KOG1051 617 GSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKR--RPYSVVLFEEIEKAHP----DVLNILLQLLDR---G 687 (898)
T ss_pred CCCCCEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC--CCCEEEEEECHHHCCH----HHHHHHHHHHHC---C
T ss_conf 886426896145555565304899555463057788899716--9965999830222288----899999999862---7
Q ss_pred CEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 1332010352364427999934865
Q gi|254780270|r 468 SFVDHYLEVEYDLSDVMFIMTANTL 492 (820)
Q Consensus 468 ~f~d~y~~~~~dls~v~fi~tan~~ 492 (820)
.++|-+ +-.+|+.+++||.|.|.-
T Consensus 688 rltDs~-Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051 688 RLTDSH-GREVDFKNAIFIMTSNVG 711 (898)
T ss_pred CCCCCC-CCEEECCCEEEEEECCCC
T ss_conf 400588-867504645999942631
No 71
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-10 Score=98.95 Aligned_cols=196 Identities=25% Similarity=0.416 Sum_probs=151.7
Q ss_pred CCHHHHHHHH-CCCCC-CCCCHH-CCCCCCCCCEEEECCCC-CEEEEEEEEEECCCCCEEECCCH-HHHHHHHHHHHHHH
Q ss_conf 7967867530-52000-332000-22336500000000016-80799999997489972443256-89999999999999
Q gi|254780270|r 586 INENNLQDYL-GVPRY-KYGKIE-GEDQVGIVTGLAWTEVG-GEILTVEGVIMPGKGEITITGNL-KEIMKESILAASSY 660 (820)
Q Consensus 586 i~~~~l~~~l-g~~~~-~~~~~~-~~~~~G~v~GLa~t~~G-G~~l~IE~~~~~g~g~l~lTG~l-g~vmkES~~~A~s~ 660 (820)
|..++|+++. ..|-- -.+.++ .-++||+|.-.+.+..| -++-..|+..+.|+|+-...|.= ..-.|||+.++..|
T Consensus 475 idne~l~e~fvsvpe~gg~~lipag~~kpg~~~~v~~~~~g~~glyrfe~q~~ag~gk~~~sg~gs~t~~keair~~f~y 554 (683)
T COG4930 475 IDNETLEEFFVSVPEQGGSELIPAGMPKPGVVHLVTQAESGMTGLYRFETQMTAGNGKHSVSGLGSSTSAKEAIRVGFDY 554 (683)
T ss_pred ECCCCHHHHHEECCCCCCCEECCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 41621787836173358862067899998638887410357413588888985058733346678772078899988888
Q ss_pred HHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHH--HHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHH
Q ss_conf 9998886299855742078147448888478887306899--99999998368887561066368503025000656899
Q gi|254780270|r 661 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAM--ATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEK 738 (820)
Q Consensus 661 ~k~~~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i--~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK 738 (820)
-|+++.+..-.. .|+..+-|+|+-+=- --|||.-.++ ..||-|.+..+||....+.-|.+||-|-|-|+-.+-.-
T Consensus 555 fk~n~~~vs~t~-~~~e~~y~lhv~~l~--~~g~s~~~sl~a~ialcs~~l~k~~qeq~~vlgsmtlgg~i~~~~~la~~ 631 (683)
T COG4930 555 FKGNLSRVSATA-KFSEHEYHLHVVELH--NTGPSTATSLAALIALCSVLLAKPVQEQMVVLGSMTLGGVINPVQDLAAS 631 (683)
T ss_pred HHCCHHHHHCEE-EECCCEEEEEEEEEC--CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCCCHHHHHHHH
T ss_conf 503155400015-203210267765300--67840466699999998998602077656331001305404168888999
Q ss_pred HHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECC-CHHHHHH
Q ss_conf 999997099699803677550776148877097999819-3999888
Q gi|254780270|r 739 LLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVS-FMGEVLK 784 (820)
Q Consensus 739 ~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~-~~~evl~ 784 (820)
+--|..+|-|+|++|-....|+.-+|.+.-.+..+-|-+ -++-|++
T Consensus 632 lq~~~dsgakkv~lp~ssa~~i~tvp~~lftkfqvsfy~~pvdavyk 678 (683)
T COG4930 632 LQLAFDSGAKKVLLPMSSAVDIPTVPAELFTKFQVSFYSEPVDAVYK 678 (683)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHEEEEECCCHHHHHH
T ss_conf 99988458755887633457767789799624146433482889998
No 72
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.21 E-value=4e-09 Score=87.94 Aligned_cols=229 Identities=16% Similarity=0.228 Sum_probs=141.9
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-------C----------------------
Q ss_conf 20116899999999999984244467359986056565027999999770-------8----------------------
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT-------G---------------------- 391 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al-------~---------------------- 391 (820)
.-|.+.+|..++ ....++...| +++.|+||+|||++++++|..| |
T Consensus 14 IvGQe~~k~aLl----l~av~p~iGg--VLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~~~~~~ 87 (347)
T CHL00081 14 IVGQEEMKLALL----LNVIDPKIGG--VMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEVRERIR 87 (347)
T ss_pred HCCHHHHHHHHH----HHHCCCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 538499999999----9825788786--9987899874999999999857874220688767898981002426665431
Q ss_pred -----------CCEEEEECCCCCC--------HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCC
Q ss_conf -----------8249986188888--------888356320014567128999998327887399993315542311771
Q gi|254780270|r 392 -----------RQYVRMSLGGVYD--------EADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGD 452 (820)
Q Consensus 392 -----------r~f~~islgg~~d--------~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gd 452 (820)
.||+-++||-..| ++-++..++. -.||-+- .....|+|+|||--+...
T Consensus 88 ~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~---f~pGlLa------~A~rGiLyvDEINll~d~---- 154 (347)
T CHL00081 88 NGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKA---FEPGLLA------KANRGILYVDEVNLLDDH---- 154 (347)
T ss_pred CCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCC---CCCCHHH------HCCCCEEEEEHHHHHHHH----
T ss_conf 466675211468625368888523011400099898458711---5653122------203885886145432379----
Q ss_pred HHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCEEEEEECCCC--CCCHHHCCCEE-EEEECC-CCHHHHHHHHHHHHH---
Q ss_conf 1556655406001681332010-352364427999934865--54413117247-998258-786899989998608---
Q gi|254780270|r 453 PSAALLEVLDPAQNSSFVDHYL-EVEYDLSDVMFIMTANTL--NIPLPLMDRME-IIRIAG-YTEEEKLQIAKNHLV--- 524 (820)
Q Consensus 453 p~~allevldp~qn~~f~d~y~-~~~~dls~v~fi~tan~~--~i~~~l~drme-~i~~~~-y~~~ek~~i~~~~l~--- 524 (820)
-.++||++..--||.-=+|-+= ..| ++.+.|+|.|-. +.++.|+||+- .+.+.+ ...+|.++|.++.+-
T Consensus 155 ~v~~LLda~a~G~~~VEReG~S~~~P---a~F~liaT~NPeEgeLrp~llDRF~l~v~v~~~~~~e~R~eiv~~r~~f~~ 231 (347)
T CHL00081 155 LVDILLDSAASGWNTVEREGISIRHP---ARFVLIGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRSNFDK 231 (347)
T ss_pred HHHHHHHHHHCCEEEECCCCEEECCC---CCEEEEECCCCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999855808980464233057---500688557865567488888263226745887898999999999997651
Q ss_pred ----------------HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCH
Q ss_conf ----------------9899862578131322899999997317741023478887999989876542117852012796
Q gi|254780270|r 525 ----------------KKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINE 588 (820)
Q Consensus 525 ----------------p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~ 588 (820)
..++...--.-.++.++++.+.++++-+ .+.||-.+.-.|..+--..|.-.+.+.+ .++.
T Consensus 232 ~p~~f~~~~~~~~~~l~~~I~~Ar~~L~~V~v~~~~~~~i~~~~-~~~~v~g~RA~I~l~raARA~AAL~GR~---~V~~ 307 (347)
T CHL00081 232 NPENFREKYSESQDALKTQIILARQLLPNVEIDYDLRVKISQIC-SELDVDGLRGDIVTNRAAKALAAFNGRD---EVTP 307 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHCCCC---CCCH
T ss_conf 96999999887899999999999864477355999999999999-9848998718999999999999986998---3689
Q ss_pred HHHHHHH
Q ss_conf 7867530
Q gi|254780270|r 589 NNLQDYL 595 (820)
Q Consensus 589 ~~l~~~l 595 (820)
+++....
T Consensus 308 eDv~~aa 314 (347)
T CHL00081 308 GDIEKVI 314 (347)
T ss_pred HHHHHHH
T ss_conf 9999999
No 73
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.19 E-value=1.9e-10 Score=97.87 Aligned_cols=178 Identities=29% Similarity=0.383 Sum_probs=127.2
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCC
Q ss_conf 52011689999999999998424446735998605656502799999977088249986188888888356320014567
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSM 419 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~ 419 (820)
|-=|-++||+++==||-=-|.++.+=. .+.|.||||.||||||.-||+=||-...-.|=+-+.=
T Consensus 5 eFiGQ~~vk~~L~l~I~AAk~R~e~LD-H~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~k--------------- 68 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALD-HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--------------- 68 (305)
T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC---------------
T ss_conf 105828899999999999982489734-1663175687467899999998389326740675547---------------
Q ss_pred CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECC-------CCCCCCCEEEE-EECCC
Q ss_conf 12899999832788739999331554231177115566554060016813320103-------52364427999-93486
Q gi|254780270|r 420 PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE-------VEYDLSDVMFI-MTANT 491 (820)
Q Consensus 420 pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~-------~~~dls~v~fi-~tan~ 491 (820)
||-+.-.|-.-.- --|+++|||--++.. -=|+|=|.--+==.|=-++ |..||-..-.| ||--.
T Consensus 69 PgDlaaiLt~L~~-gDVLFIDEIHRL~p~--------~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~ 139 (305)
T TIGR00635 69 PGDLAAILTNLEE-GDVLFIDEIHRLSPA--------IEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred HHHHHHHHHHCCC-CCEEECCHHHHCCHH--------HHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 5789999970568-963101256504833--------4531053001217877871289852576068694420000347
Q ss_pred CCCCHHHCCCEEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 554413117247998-2587868999899986089899862578131322899999997317
Q gi|254780270|r 492 LNIPLPLMDRMEIIR-IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 492 ~~i~~~l~drme~i~-~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
=-+..||+||.=+|. +.=||.+|=..|.+++- .--++.+++++...|-+.-
T Consensus 140 G~lt~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A----------~~L~~ei~~~~a~~IArrS 191 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTPEELAEIVSRSA----------GLLNIEIEQEAALEIARRS 191 (305)
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH----------HHCCCCCCHHHHHHHHHHC
T ss_conf 741031334544745402689878999987533----------4414300778999998754
No 74
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=99.17 E-value=2.3e-11 Score=104.84 Aligned_cols=285 Identities=24% Similarity=0.408 Sum_probs=167.5
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCC----CCCCCE---EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 652011689999999999998424----446735---9986056565027999999770882499861888888883563
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVI----KNKGLI---LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~----~~~g~i---l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
+|.=|.|++||-+.|..--.| +| +.-|.| .+||||||||||-|||.||===+.||.+|| | +|==|
T Consensus 59 ~DVAG~dEAKeEl~EiVdFLK-~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iS--G-SdFVE---- 130 (505)
T TIGR01241 59 KDVAGIDEAKEELVEIVDFLK-NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS--G-SDFVE---- 130 (505)
T ss_pred CCCCCCHHHHHHHHHHHHHCC-CCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEC--C-CCEEE----
T ss_conf 344453233343331342226-963798727889871473178784246788752025889624740--7-61011----
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHCCCC--HHHH----------HHHHCCCCCCCCEEEEECCCCC
Q ss_conf 200145671289999983278873-99993315542311771--1556----------6554060016813320103523
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDLRGD--PSAA----------LLEVLDPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~~gd--p~~a----------llevldp~qn~~f~d~y~~~~~ 478 (820)
=+||==-.|+=.-..+|+.+-| +|++||||=+|+. ||- -.++ ||==- +.|..+
T Consensus 131 --MFVGVGASRVRDLFeqAK~nAPCIIFIDEIDAVGr~-RGaG~lGGGnDEREQTLNQLLVEM-----DGF~~~------ 196 (505)
T TIGR01241 131 --MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQ-RGAGELGGGNDEREQTLNQLLVEM-----DGFGTN------ 196 (505)
T ss_pred --CCCCCCCEEHHHHHHHHHHHCCCEEEEECHHHCCCC-CCCCCCCCCCCHHHHHHHHHHEEC-----CCCCCC------
T ss_conf --120564000144579999718970564010000333-564366765413554332331331-----785898------
Q ss_pred CCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 644279999348655-44131-----172479982587868999899986089899862578131322899999997317
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
-.|+-||--|=.| .+++| -||==+|..|.|.- -.+|-+=|+- .+.+++++=...|-.-
T Consensus 197 --~gvIv~AATNRPDvLD~ALLRPGRFDRQv~V~~PD~~G--R~~IL~VH~~------------~~kLa~~vdL~~~Ar~ 260 (505)
T TIGR01241 197 --TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG--REEILKVHAK------------NKKLAPDVDLKAVARR 260 (505)
T ss_pred --CCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHH--HHHHHHHHHC------------CCCCCCCCCHHHHHHH
T ss_conf --85799850488411651006878744513458887467--8999999854------------8899702477999701
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHH-----HCCCC---------------------------
Q ss_conf 74-1023478887999989876542117852012796786753-----05200---------------------------
Q gi|254780270|r 553 TH-EAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDY-----LGVPR--------------------------- 599 (820)
Q Consensus 553 t~-EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~-----lg~~~--------------------------- 599 (820)
|- =||- .|+.+|=.+|+--+....+ .|+..++++. .|+.|
T Consensus 261 TPGfSGA-----DLaNl~NEAALlAAR~n~~--~i~~~~~eeA~Drv~~G~ekKsr~is~~eK~~vAYHEaGHAl~G~~~ 333 (505)
T TIGR01241 261 TPGFSGA-----DLANLLNEAALLAARKNKT--EITMNDIEEAVDRVIAGLEKKSRVISEKEKKIVAYHEAGHALVGLLL 333 (505)
T ss_pred CCCCCHH-----HHHHHHHHHHHHHHHCCCC--EECHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEECHHHHHHHHHC
T ss_conf 5687678-----8999999999998617986--56288898787765227667885326777422201115789999735
Q ss_pred CCCCCHHCCCCC--CC-CCEEEEC-CCCCEEEEEE-E-------EEECCC-------C-CEEECCCHHHHHHHHHHHHHH
Q ss_conf 033200022336--50-0000000-0168079999-9-------997489-------9-724432568999999999999
Q gi|254780270|r 600 YKYGKIEGEDQV--GI-VTGLAWT-EVGGEILTVE-G-------VIMPGK-------G-EITITGNLKEIMKESILAASS 659 (820)
Q Consensus 600 ~~~~~~~~~~~~--G~-v~GLa~t-~~GG~~l~IE-~-------~~~~g~-------g-~l~lTG~lg~vmkES~~~A~s 659 (820)
-.++.+++-+-+ |. +-|.+|. |-.|+-.-+. . +.|-|. | .=+-||=..|..| |-.
T Consensus 334 ~~~DpV~KvTIIPRG~~AlG~t~~lP~~~D~~l~~k~~L~~~i~~~lGGRaAEe~~fG~~~vttGA~nD~~~-----AT~ 408 (505)
T TIGR01241 334 KDADPVHKVTIIPRGQGALGYTQFLPEEGDKYLYTKKQLLAKIAVLLGGRAAEEIIFGEEEVTTGASNDLKQ-----ATN 408 (505)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHH-----HHH
T ss_conf 344752325631478441551683677444100368899999998732031002230788732362115899-----999
Q ss_pred HHHHHHHHCCCCHH
Q ss_conf 99998886299855
Q gi|254780270|r 660 YVRSKATTFGIIPS 673 (820)
Q Consensus 660 ~~k~~~~~~~~~~~ 673 (820)
.+|+--.+||..++
T Consensus 409 iAr~MVT~~GMS~k 422 (505)
T TIGR01241 409 IARAMVTEWGMSEK 422 (505)
T ss_pred HHHHHCCCCCCCCC
T ss_conf 99973153367420
No 75
>KOG0733 consensus
Probab=99.15 E-value=1.8e-09 Score=90.57 Aligned_cols=222 Identities=22% Similarity=0.346 Sum_probs=135.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 6520116899999999999984244-------467359986056565027999999770882499861888888883563
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
.|.=||++|++....++---..+++ .-..-++|+||||.|||-|||.+|+--|-.| ||.-| .|+-
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF--isVKG----PELl-- 582 (802)
T KOG0733 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF--ISVKG----PELL-- 582 (802)
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCE--EEECC----HHHH--
T ss_conf 641249999999999986002388899982888987238757998618899999850304754--76238----8999--
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCC-EEEEEECHHHHHHH--CCCCH-----HHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 20014567128999998327887-39999331554231--17711-----556655406001681332010352364427
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRAKRSN-PLLLLDEIDKMGSD--LRGDP-----SAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~~~~n-pv~~ldeidk~~~~--~~gdp-----~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
--|||-----+=|..-+|..+- +||+|||||-+... ..|.- .+-||.=||-- -+=.+|
T Consensus 583 -NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-------------~~R~gV 648 (802)
T KOG0733 583 -NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-------------EERRGV 648 (802)
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC-------------CCCCCE
T ss_conf -877423789999999986238983898511120276557777505899999999873162-------------111425
Q ss_pred EEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--CCCCC
Q ss_conf 9999348655-44131-----1724799825878689998999860898998625781313228999999973--17741
Q gi|254780270|r 484 MFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR--LFTHE 555 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~--~Yt~E 555 (820)
+.|+--|--+ |.+++ +|+.=.+.+| ..+|++.|-|.+. +.++ .+-.-.+.=+.|-..-+ .||
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lP--n~~eR~~ILK~~t-----kn~k-~pl~~dVdl~eia~~~~c~gft-- 718 (802)
T KOG0733 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLP--NAEERVAILKTIT-----KNTK-PPLSSDVDLDEIARNTKCEGFT-- 718 (802)
T ss_pred EEEEECCCCCCCCHHHCCCCCCCCEEEECCC--CHHHHHHHHHHHH-----CCCC-CCCCCCCCHHHHHHCCCCCCCC--
T ss_conf 9995068976555655187755742450699--8788999999985-----3579-9887545899985123226875--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCC--------C-C-----CEECCCHHHHHHHHCCC
Q ss_conf 023478887999989876542117--------8-5-----20127967867530520
Q gi|254780270|r 556 AGVRSFERALMKIARKAVTKIVKN--------S-D-----TTVSINENNLQDYLGVP 598 (820)
Q Consensus 556 aGvR~l~r~i~~i~r~~~~~~~~~--------~-~-----~~~~i~~~~l~~~lg~~ 598 (820)
| -.|+.+||+++.--++. . + .++.+|..+.++.+..-
T Consensus 719 -G-----ADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i 769 (802)
T KOG0733 719 -G-----ADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRI 769 (802)
T ss_pred -H-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECHHHHHHHHHHC
T ss_conf -3-----65999999999999999986111257663023200243089999999863
No 76
>KOG4159 consensus
Probab=99.12 E-value=4.7e-10 Score=94.96 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=125.6
Q ss_pred CCCEEEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECC
Q ss_conf 77636756631782568871430642948999999999972-98499997368677788865602531489999979988
Q gi|254780270|r 23 ADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNS-HKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLP 101 (820)
Q Consensus 23 ~~~~~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~-d~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klp 101 (820)
+.---.|+||+ .+..||....|++||+++|..|+++++.. +.+++++. -|+.. +....+++||+.+|.++..+.
T Consensus 172 ~~e~~~p~f~v-~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~rf~i~~-sd~~~---~~~~~~e~g~i~ei~~v~~l~ 246 (398)
T KOG4159 172 SRECESPLFPV-CTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICL-SDSSK---GSGQAAEIGCILEIRKVESLG 246 (398)
T ss_pred CCCCCCCCCCC-CCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCEEEEEEC-CCCCC---CCCHHHHCCCHHHHCCCCCCC
T ss_conf 32024776330-40003356671787064299999999862550221242-66557---863143333104330350025
Q ss_pred CCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEECCCC---C-CC---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9809999997547999988707981999999804888---8-84---789999999999999999854557778887641
Q gi|254780270|r 102 DGTVKILVEGSVRARIVEYIEREDFLEAITQVLPDPT---E-DP---VELEALSRSVIAEFSNYIKLNKKISPEVIGITS 174 (820)
Q Consensus 102 DG~~~ILVeGl~RvkI~ei~~~~pyl~A~Ve~l~d~~---~-d~---~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~ 174 (820)
||++.+...|..||++..+.+.++|.+|.+++++|.+ . .. .....++..+......+.. .........+.
T Consensus 247 dgrsv~~~~gk~r~r~~~~~~~d~y~~~~ve~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~ 323 (398)
T KOG4159 247 DGRSVVDSIGKSRFRVLLFSQTDGYPVADVEYLEDRPAVKVEGHDEPETLVELMKEVVKKECLWFE---SVADPMKGRLL 323 (398)
T ss_pred CCCHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCHHHHHCCCHHCHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHH
T ss_conf 640456542576514565217876314443223074776421520021688888998886664662---24235441466
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26886789999885235898999998743247999999999999865
Q gi|254780270|r 175 QIEGFSKLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEI 221 (820)
Q Consensus 175 ~iddp~~LAD~IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~lL~~Ei 221 (820)
.--.+..+.+...+.+.......+.+++..+...|+......+.+..
T Consensus 324 ~~~~~~p~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ 370 (398)
T KOG4159 324 VHFGCMPFLEINFECLESGPAWCWWKTALLPSEARLKSEFLAMRSLK 370 (398)
T ss_pred HCCCCCCCCHHCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHH
T ss_conf 40265641211455411541889999841772778899998523400
No 77
>KOG0734 consensus
Probab=99.11 E-value=1.8e-08 Score=82.88 Aligned_cols=280 Identities=25% Similarity=0.326 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHH---HHHHHHHHCCCCC---CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 221068899877665201168999999---9999998424446---7359986056565027999999770882499861
Q gi|254780270|r 326 TKKNLDFAIRILDQDHFGLEKVKERII---EYLAVQMRVIKNK---GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSL 399 (820)
Q Consensus 326 ~~~dl~~a~~iLd~~hyGl~~vK~ril---e~lav~~~~~~~~---g~il~l~gppgvGKts~~~sia~al~r~f~~isl 399 (820)
...|-.....+-=+|.-|.+++|+-+= |||---....... ..-++|+||||+|||-||+.||---|-||+..|
T Consensus 291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s- 369 (752)
T KOG0734 291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS- 369 (752)
T ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECC-
T ss_conf 4468466416550021472789999999999860908764314758885387689997556999986055689747416-
Q ss_pred CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC-CEEEEEECHHHHHHHCCC-CHH------HHHHHHCC-CCCCCCEE
Q ss_conf 8888888835632001456712899999832788-739999331554231177-115------56655406-00168133
Q gi|254780270|r 400 GGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS-NPLLLLDEIDKMGSDLRG-DPS------AALLEVLD-PAQNSSFV 470 (820)
Q Consensus 400 gg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~-npv~~ldeidk~~~~~~g-dp~------~allevld-p~qn~~f~ 470 (820)
|.--|| -|||--.-|+-.-...|+.. -++|++||||-+|..-+- |-. +-||-=+| -+||.
T Consensus 370 GSEFdE--------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe--- 438 (752)
T KOG0734 370 GSEFDE--------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE--- 438 (752)
T ss_pred CCCHHH--------HHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---
T ss_conf 620445--------422014899999999987349859997200220566786277899989999999842867688---
Q ss_pred EEECCCCCCCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 20103523644279999348655-44131-----1724799825878689998999860898998625781313228999
Q gi|254780270|r 471 DHYLEVEYDLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGV 544 (820)
Q Consensus 471 d~y~~~~~dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~ 544 (820)
.|++|.--|-.+ .+++| .||- |.+|.--..-..+|.+-||-. +.+++++
T Consensus 439 -----------GiIvigATNfpe~LD~AL~RPGRFD~~--v~Vp~PDv~GR~eIL~~yl~k------------i~~~~~V 493 (752)
T KOG0734 439 -----------GIIVIGATNFPEALDKALTRPGRFDRH--VTVPLPDVRGRTEILKLYLSK------------IPLDEDV 493 (752)
T ss_pred -----------CEEEEECCCCHHHHHHHHCCCCCCCEE--EECCCCCCCCHHHHHHHHHHC------------CCCCCCC
T ss_conf -----------669995168745556873488755336--746897733289999999834------------8765677
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHH-----HHCCCCCCCCCHHCCCCCCCCCEEE
Q ss_conf 9999731774-102347888799998987654211785201279678675-----3052000332000223365000000
Q gi|254780270|r 545 LLDIIRLFTH-EAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQD-----YLGVPRYKYGKIEGEDQVGIVTGLA 618 (820)
Q Consensus 545 i~~ii~~Yt~-EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~-----~lg~~~~~~~~~~~~~~~G~v~GLa 618 (820)
=-.||..=|- =+| -+ |+.++--+|++-+.+. ...++.++|+. ..|++|-.. .+.++.+- --|
T Consensus 494 D~~iiARGT~GFsG-Ad----LaNlVNqAAlkAa~dg--a~~VtM~~LE~akDrIlMG~ERks~-~i~~eak~----~TA 561 (752)
T KOG0734 494 DPKIIARGTPGFSG-AD----LANLVNQAALKAAVDG--AEMVTMKHLEFAKDRILMGPERKSM-VIDEEAKK----ITA 561 (752)
T ss_pred CHHHHCCCCCCCCH-HH----HHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHEEECCCCCCC-CCCHHHHH----HHH
T ss_conf 87672268898765-78----9988889999998637--4011088776544332115211334-46814544----344
Q ss_pred ECCCCCEE--------EEE-EEEEECCCCCEEECCCHHHHHHHHH
Q ss_conf 00016807--------999-9999748997244325689999999
Q gi|254780270|r 619 WTEVGGEI--------LTV-EGVIMPGKGEITITGNLKEIMKESI 654 (820)
Q Consensus 619 ~t~~GG~~--------l~I-E~~~~~g~g~l~lTG~lg~vmkES~ 654 (820)
|-..|-.+ +|+ -++.||--..|-.|-+|-+.=+-|.
T Consensus 562 yHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~ 606 (752)
T KOG0734 562 YHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSI 606 (752)
T ss_pred HHCCCCEEEEEECCCCCCCCCEEECCCCCCCCCEEECCCCCHHHH
T ss_conf 332672588751278866430253257766663134686540457
No 78
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.10 E-value=4.1e-09 Score=87.81 Aligned_cols=154 Identities=23% Similarity=0.295 Sum_probs=93.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEE-------------EEECCCCCCH
Q ss_conf 5201168999999999999842444673-5998605656502799999977088249-------------9861888888
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYV-------------RMSLGGVYDE 405 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~-il~l~gppgvGKts~~~sia~al~r~f~-------------~islgg~~d~ 405 (820)
++||.+.+..+.+.+. ..+. +++ .++|.||||+|||+.|..+|+.|.-... .+..|--.|-
T Consensus 2 ~~~~~~~~~~~l~~~~--~~~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQA--LESG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CCCCCHHHHHHHHHHH--HHCC---CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCE
T ss_conf 6433235899999999--8658---8876100379999978999999999965866433455200224443202568865
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHCC------CCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCC
Q ss_conf 88356320014567128999998327------887399993315542311771155665540-60016813320103523
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRAK------RSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~~------~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~ 478 (820)
-|+.--..-..+ .--..|..+.+.. ...=|+++||+|+|+. |-++|||-++ .|.
T Consensus 77 lel~~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----~A~nallk~lEep~-------------- 137 (325)
T COG0470 77 LELNPSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----DAANALLKTLEEPP-------------- 137 (325)
T ss_pred EEECCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH----HHHHHHHHHCCCCC--------------
T ss_conf 997732133330-06999999998604465667726999732032698----88876754332488--------------
Q ss_pred CCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf 644279999348655-44131172479982587868999899
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIA 519 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~ 519 (820)
++..||+++|+.+ |.+|++.|-.++++..-+..+.+...
T Consensus 138 --~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 138 --KNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAWL 177 (325)
T ss_pred --CCEEEEEEECCHHHCHHHHHHHEEEEECCCCCHHHHHHHH
T ss_conf --8716999749855564787756078876774188999985
No 79
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.08 E-value=2.1e-08 Score=82.47 Aligned_cols=205 Identities=20% Similarity=0.346 Sum_probs=140.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCC-CCCCC---CHHHHHHHHHCCC
Q ss_conf 44673599860565650279999997708---8249986188888---8883563200-14567---1289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYD---EADIRGHRRT-YIGSM---PGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d---~~~i~gh~~t-y~ga~---pg~ii~~l~~~~~ 432 (820)
....|+| +.|++||||..+|+.|...=. .||+.|.++++.+ |+|+=||.+- |.||. +|++-++
T Consensus 164 ~s~~~VL-I~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~kgaftga~~~~~G~~e~A------ 236 (457)
T PRK11361 164 LSQASVL-ISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA------ 236 (457)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC------
T ss_conf 8899589-988998578999999998379889983876478798577899971876678788531469861335------
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEC--CCCCCCCCEEEEEECC-CC-C-CC-----HHHCCCE
Q ss_conf 873999933155423117711556655406001681332010--3523644279999348-65-5-44-----1311724
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL--EVEYDLSDVMFIMTAN-TL-N-IP-----LPLMDRM 502 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~--~~~~dls~v~fi~tan-~~-~-i~-----~~l~drm 502 (820)
.+.-++||||+.|+.+.+ ..||.+|. +..|.---= .+++ +|-+||+.| ++ + +. .-|.-|+
T Consensus 237 ~gGTLfLdeI~~l~~~~Q----~kLLr~L~---~~~~~~~g~~~~~~~---dvRiIaaT~~~L~~~v~~g~Fr~DLyyrL 306 (457)
T PRK11361 237 NEGTLLLDEIGEMPLVLQ----AKLLRILQ---EREFERIGGHQTIKV---DIRIIAATNRDLQAMVKEGTFREDLFYRL 306 (457)
T ss_pred CCCCEECCCHHHHHHHHH----HHHHHHHH---CCCEEECCCCCEEEE---CCEEEECCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 998263146645239999----99999986---492785699713665---34899657878599987583238899530
Q ss_pred EEEEE--CCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79982--58786-8999899986089899862578131322899999997317741023478887999989876542117
Q gi|254780270|r 503 EIIRI--AGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKN 579 (820)
Q Consensus 503 e~i~~--~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~ 579 (820)
-++.+ |+.-. .|-+----+|.+-+...++|.. ...|+++++.. ...|.+-.-||+|+..+...+- ...
T Consensus 307 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~--~~~~s~~a~~~-L~~y~WPGNvREL~n~ierav~-----~~~- 377 (457)
T PRK11361 307 NVIHLILPPLRDRREDISLLANHFLQKFSSENQRD--IIDIDPMAMSL-LTAWSWPGNIRELSNVIERAVV-----MNS- 377 (457)
T ss_pred CEEEEECCCHHHCHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHH-----HCC-
T ss_conf 22125173854587549999999999999974999--89889999999-9569999799999999999998-----289-
Q ss_pred CCCEECCCHHHHHHHHC
Q ss_conf 85201279678675305
Q gi|254780270|r 580 SDTTVSINENNLQDYLG 596 (820)
Q Consensus 580 ~~~~~~i~~~~l~~~lg 596 (820)
.-.|+.+++...+.
T Consensus 378 ---~~~i~~~~l~~~~~ 391 (457)
T PRK11361 378 ---GPIIFSEDLPPQIR 391 (457)
T ss_pred ---CCCCCHHHCCHHHH
T ss_conf ---98156676848661
No 80
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.07 E-value=1.2e-08 Score=84.35 Aligned_cols=208 Identities=20% Similarity=0.323 Sum_probs=132.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCC-CCCC---CCHHHHHHHHHCCC
Q ss_conf 44673599860565650279999997708---8249986188888---8883563200-1456---71289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYD---EADIRGHRRT-YIGS---MPGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d---~~~i~gh~~t-y~ga---~pg~ii~~l~~~~~ 432 (820)
.+..||| +.|.+||||..+|++|...=. .||+.+.++.+.+ |+|+-||.+- +-|| .+|++-+ .
T Consensus 207 ~sd~pVL-I~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLFGh~kGaFtGA~~~r~G~fe~------A 279 (510)
T PRK05022 207 ASDLNVL-ITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFEL------A 279 (510)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEE------C
T ss_conf 8999889-88989813999999999668878998578889999856789986597778868865567881017------7
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-C-C-CC-----HHHCCCEEE
Q ss_conf 87399993315542311771155665540600168133201035236442799993486-5-5-44-----131172479
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-L-N-IP-----LPLMDRMEI 504 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-~-~-i~-----~~l~drme~ 504 (820)
.+..++||||+.++.+.+ +.||.+|. |..|+---=+-+.. .+|=+||+.|- + + +- +-|..|+-+
T Consensus 280 ~gGTLfLDEI~~Lpl~~Q----~KLLrvLq---~g~iqrvG~~~~~~-vdvRIIAATnrdL~~~V~~G~FR~DLYyRLsv 351 (510)
T PRK05022 280 DGGTLFLDEIGELPLALQ----AKLLRVLQ---YGEIQRVGSDRSLR-VDVRVIAATNRDLREEVLAGRFRADLYHRLSV 351 (510)
T ss_pred CCCEEEEECHHHCCHHHH----HHHHHHHH---CCEEEECCCCCEEE-EEEEEEEECCCCHHHHHHCCCHHHHHHHHHHC
T ss_conf 898798757454999999----99999984---79588558994666-66899960783599998839638999987620
Q ss_pred E--EECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9--8258786-899989998608989986257813132289999999731774102347888799998987654211785
Q gi|254780270|r 505 I--RIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 505 i--~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
+ .+|+.-. .|-+..--.|.+-+...+.|. ..+.|+++++.. ...|.+---||+|+..|...+ ..-...+..
T Consensus 352 ~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~--~~~~ls~eAl~~-L~~Y~WPGNVRELenvIeRA~---lla~~~~~~ 425 (510)
T PRK05022 352 FPLPVPPLRERGDDVLLLAGYFLEQNRLRLGL--SSLRLSPDAQAA-LLQYDWPGNVRELEHVISRAA---LLARARRAG 425 (510)
T ss_pred CCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHH---HHHCCCCCC
T ss_conf 40348086555540999999999999998298--989888999999-970999978999999999999---971566677
Q ss_pred CEECCCHHHH
Q ss_conf 2012796786
Q gi|254780270|r 582 TTVSINENNL 591 (820)
Q Consensus 582 ~~~~i~~~~l 591 (820)
...+++.+++
T Consensus 426 ~~~~i~~~~l 435 (510)
T PRK05022 426 DIVTLEAQHL 435 (510)
T ss_pred CCCCCCHHHC
T ss_conf 6442567664
No 81
>KOG0989 consensus
Probab=99.06 E-value=3.7e-09 Score=88.18 Aligned_cols=166 Identities=28% Similarity=0.388 Sum_probs=105.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC--CHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-------
Q ss_conf 4673599860565650279999997708824998618888--8888356320014567128999998327887-------
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY--DEADIRGHRRTYIGSMPGRIIQSLKRAKRSN------- 434 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~--d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n------- 434 (820)
..+|.+.|+|||||||||-++..|++|+-+-- +.. |+- ..++-||-. --+++| +...+.-..+
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~-~~~-rvl~lnaSderGis-----vvr~Ki-k~fakl~~~~~~~~~~~ 126 (346)
T KOG0989 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQL-FPC-RVLELNASDERGIS-----VVREKI-KNFAKLTVLLKRSDGYP 126 (346)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCC-CHHHHCCCCCCCCC-----CHHHHH-CCHHHHHHCCCCCCCCC
T ss_conf 68860786689998676899999998557423-555-42431366001431-----006652-37998750255656788
Q ss_pred ----EEEEEECHHHHHHHCCCCHHHHHHHHCCC-CCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEEC
Q ss_conf ----39999331554231177115566554060-016813320103523644279999348655-441311724799825
Q gi|254780270|r 435 ----PLLLLDEIDKMGSDLRGDPSAALLEVLDP-AQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIA 508 (820)
Q Consensus 435 ----pv~~ldeidk~~~~~~gdp~~allevldp-~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~ 508 (820)
-||+|||-|-|+++. .+||.-++|- .| .+-||+-.|+++ ||.||..|---...+
T Consensus 127 ~~~fKiiIlDEcdsmtsda----q~aLrr~mE~~s~----------------~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989 127 CPPFKIIILDECDSMTSDA----QAALRRTMEDFSR----------------TTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred CCCCEEEEEECHHHHHHHH----HHHHHHHHHCCCC----------------CEEEEEECCCHHHCCHHHHHHHHHHCCC
T ss_conf 9863289974164530999----9999999862546----------------6599997388564772877467771288
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 8786899989998608989986257813132289999999731774102347888799998
Q gi|254780270|r 509 GYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIA 569 (820)
Q Consensus 509 ~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~ 569 (820)
..-.+.-+. -++..+ .++.+.++++++..|.+.- +.-.|.-+-.|.++.
T Consensus 187 ~L~d~~iv~---------rL~~Ia-~~E~v~~d~~al~~I~~~S--~GdLR~Ait~Lqsls 235 (346)
T KOG0989 187 KLKDEDIVD---------RLEKIA-SKEGVDIDDDALKLIAKIS--DGDLRRAITTLQSLS 235 (346)
T ss_pred CCCHHHHHH---------HHHHHH-HHHCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_conf 764478999---------999998-8858997878999999973--872899999999861
No 82
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.06 E-value=4.6e-10 Score=95.02 Aligned_cols=343 Identities=20% Similarity=0.321 Sum_probs=205.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH----HHHHCCCEEEEECCCCCCHH----HHCCCCCC-CCCCCCHHHHHHHHHCCCCC
Q ss_conf 46735998605656502799999----97708824998618888888----83563200-14567128999998327887
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSI----AKATGRQYVRMSLGGVYDEA----DIRGHRRT-YIGSMPGRIIQSLKRAKRSN 434 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~si----a~al~r~f~~islgg~~d~~----~i~gh~~t-y~ga~pg~ii~~l~~~~~~n 434 (820)
++|..++.=|-||+||.+|---+ |+...+=.| || | .|| -+|-||== --=-.|..--+++.+.-..-
T Consensus 101 vpGsliLiGG~PG~GKSTLLLqV~~~LA~~~~~~LY-Vs--G--EES~~Q~klRA~RLGit~~~~~sqaqdGinnlahdG 175 (481)
T TIGR00416 101 VPGSLILIGGDPGIGKSTLLLQVACQLAKNSMKVLY-VS--G--EESLQQIKLRATRLGITDLVEPSQAQDGINNLAHDG 175 (481)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE-EE--E--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 244169846889963567899999998404881689-97--2--301677888875455324787023443245430267
Q ss_pred EEEEEECHHHHHHHCCCCHHHHHHH-------HCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEE
Q ss_conf 3999933155423117711556655-------406001681332010352364427999934865544131172479982
Q gi|254780270|r 435 PLLLLDEIDKMGSDLRGDPSAALLE-------VLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRI 507 (820)
Q Consensus 435 pv~~ldeidk~~~~~~gdp~~alle-------vldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~~ 507 (820)
-+++|.|+|= |--.+.+| |.|.=||-.|-| -.+.
T Consensus 176 ~L~~L~Et~~-------e~I~~~~e~~~P~~~ViDSIQ~ly~~d-----------------i~Sa--------------- 216 (481)
T TIGR00416 176 NLYVLSETNL-------EQICAEIEELNPQVVVIDSIQTLYLPD-----------------ISSA--------------- 216 (481)
T ss_pred CCCCCCCCCH-------HHHHHHHHHHCCCEEEEECCCCCCCHH-----------------HCCC---------------
T ss_conf 5321575798-------999999985299489991421000000-----------------0258---------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC---CHHHHHHHHHHHHH-----HHHHHHHHCC
Q ss_conf 587868999899986089899862578131322899999997317741---02347888799998-----9876542117
Q gi|254780270|r 508 AGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHE---AGVRSFERALMKIA-----RKAVTKIVKN 579 (820)
Q Consensus 508 ~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~E---aGvR~l~r~i~~i~-----r~~~~~~~~~ 579 (820)
+=+.--=.+++ ..|-|.-|.-+ +--.||-|-|.| ||=|=||-.++.+. |....++++.
T Consensus 217 -PGSVsQVRE~t--~~Lmr~AKt~~-----------iaifiVGHVTKeGsiAGPkvLEH~vD~vLyfeGd~~~~~R~LRS 282 (481)
T TIGR00416 217 -PGSVSQVRECT--AELMRLAKTRG-----------IAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRS 282 (481)
T ss_pred -CCCHHHHHHHH--HHHHHHHHHCC-----------CCEEEEEEECCCCCCCCCHHHHHHHHHHEECCCCCCCCCCHHHC
T ss_conf -88423888999--99987652168-----------65799700435675434046663433110115887534440100
Q ss_pred C---------CCEECCCHHHHHHHHCCCC-CCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEEC---CCCCEEECCCH
Q ss_conf 8---------5201279678675305200-033200022336500000000016807999999974---89972443256
Q gi|254780270|r 580 S---------DTTVSINENNLQDYLGVPR-YKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMP---GKGEITITGNL 646 (820)
Q Consensus 580 ~---------~~~~~i~~~~l~~~lg~~~-~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~---g~g~l~lTG~l 646 (820)
. -.-+..+.+-|.+.+-|.. |-..+.+-.. |-.--.+|-..=--++.|+|.+.| |+.+=.-||-
T Consensus 283 ~KNRFGat~E~G~FeM~e~GL~ev~nPS~iFL~~~~e~~~--GSsitv~~EGtRPLlvEiQALVs~~s~anPrR~A~G~- 359 (481)
T TIGR00416 283 VKNRFGATNEIGIFEMTEQGLREVLNPSAIFLSRREEVMS--GSSITVALEGTRPLLVEIQALVSPTSFANPRRVATGL- 359 (481)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC--CCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEECCH-
T ss_conf 0156787342101000023356453145664157645666--7301234237348888887522614368863100442-
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 8999999999999999988-862998557420781474488884788873068999999999836888756106636850
Q gi|254780270|r 647 KEIMKESILAASSYVRSKA-TTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTL 725 (820)
Q Consensus 647 g~vmkES~~~A~s~~k~~~-~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl 725 (820)
|.=++++= =+.+ +++++. +.+.|..|+| .|++.-|=||+-.||..||+|.|-+||++++.++=|||.|
T Consensus 360 -----d~NRL~~L--lAvLek~~Gl~---l~~~Dvf~~V-~GGvkv~Epa~DLA~~~a~~SSFrdr~~~~~~~~lGEVGL 428 (481)
T TIGR00416 360 -----DQNRLALL--LAVLEKRLGLP---LADQDVFLNV-AGGVKVSEPAVDLALLIALVSSFRDRPLDPDLVILGEVGL 428 (481)
T ss_pred -----HHHHHHHH--HHHHHHHCCCC---HHHCCEEEEE-ECCEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf -----25689999--99987640661---1117347986-2350541057889999999987517887856388876437
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHH
Q ss_conf 3025000656899999997099699803677550776148877097999819399988
Q gi|254780270|r 726 RGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVL 783 (820)
Q Consensus 726 ~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl 783 (820)
.|+|.||--+.+-+-=|-+.|-|+.|+|+.|...|.+ .++|+++.|..+.+++
T Consensus 429 ~G~ir~vp~~~~R~kEaak~GFkraIvP~~~~~~W~~-----~~gi~~~~v~~v~~al 481 (481)
T TIGR00416 429 AGEIRPVPSLEERLKEAAKLGFKRAIVPKANLPKWTA-----PEGIKVIGVKKVADAL 481 (481)
T ss_pred CCEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCC-----CCCCEEEEHHHHHHHC
T ss_conf 7704007763167999984686344214788887524-----4562476034465409
No 83
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.05 E-value=2.3e-08 Score=82.23 Aligned_cols=184 Identities=21% Similarity=0.322 Sum_probs=126.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 4446735998605656502799999977088---249986188888---8883563200145671289999983278873
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRTYIGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np 435 (820)
.....|+| +.|..||||..+|+.|..+-.| ||+.+.+|++.+ |+|+=||- .+..+|.+-+ ..+.
T Consensus 224 A~~d~pVL-I~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG~a---~~~~~G~fe~------A~gG 293 (513)
T PRK10820 224 AMLSAPLL-ITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFGHA---PEGKKGFFEQ------ANGG 293 (513)
T ss_pred HCCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCC---CCCCCCCEEE------CCCC
T ss_conf 59899889-989898249999999996688789982688899899678999863876---6688975578------5898
Q ss_pred EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCEEEEEECCC-C-C------CCHHHCCCEEEE
Q ss_conf 99993315542311771155665540600168133201--035236442799993486-5-5------441311724799
Q gi|254780270|r 436 LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHY--LEVEYDLSDVMFIMTANT-L-N------IPLPLMDRMEII 505 (820)
Q Consensus 436 v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y--~~~~~dls~v~fi~tan~-~-~------i~~~l~drme~i 505 (820)
-++||||+-|+...+ +.||.+|. +..|+--= =.+++ +|=+||+.|. + . .-.-|..|+-++
T Consensus 294 TLfLdEI~~l~~~~Q----~kLLr~Lq---~~~~~rvG~~~~~~~---dvRiIaaT~~dL~~lv~~g~FReDLyyRL~v~ 363 (513)
T PRK10820 294 SVLLDEIGEMSPRMQ----AKLLRFLN---DGTFRRVGEDHEVHV---DVRVICATQKNLVELVQKGLFREDLYYRLNVL 363 (513)
T ss_pred EEEEECHHHCCHHHH----HHHHHHHH---CCEEEECCCCCEEEE---EEEEEECCCHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 899978365999999----99999986---897996599853567---78999626530999987298508899986167
Q ss_pred E--ECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 8--258786-89998999860898998625781313228999999973177410234788879999
Q gi|254780270|r 506 R--IAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKI 568 (820)
Q Consensus 506 ~--~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i 568 (820)
. +|+.-. .|-+..--+|.+-+...++|... ..|+++++.. ...|.+---||+|+..+...
T Consensus 364 ~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~--~~ls~~a~~~-L~~y~WPGNVREL~n~iera 426 (513)
T PRK10820 364 TLNLPPLRDCPQDIMPLTELFVARFADEQGVPR--PKLSADLSTV-LTRYGWPGNVRQLKNAIYRA 426 (513)
T ss_pred CCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHH-HHHCCCCCHHHHHHHHHHHH
T ss_conf 255888344655699999999999999759998--9847999999-97089997999999999999
No 84
>KOG0651 consensus
Probab=99.05 E-value=1.7e-09 Score=90.68 Aligned_cols=185 Identities=30% Similarity=0.470 Sum_probs=115.9
Q ss_pred HHHHHHHH---HHHHHCCC------CC-CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCC
Q ss_conf 99999999---99984244------46-7359986056565027999999770882499861888888883563200145
Q gi|254780270|r 348 KERIIEYL---AVQMRVIK------NK-GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417 (820)
Q Consensus 348 K~rile~l---av~~~~~~------~~-g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~g 417 (820)
.+.|-|+. +|-..|+. .+ +.+++|.||||+|||-+|+.||..||-.|..++-|.+-| -|+|
T Consensus 138 ~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~---------kyiG 208 (388)
T KOG0651 138 FYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD---------KYIG 208 (388)
T ss_pred HHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHH---------HHCC
T ss_conf 8888998865574024810023457778825687679998645999999986598547744766633---------0026
Q ss_pred CCCHHHHHHHHH-C-CCCCEEEEEECHHHHHHH-C-CC-----CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEE
Q ss_conf 671289999983-2-788739999331554231-1-77-----1155665540600168133201035236442799993
Q gi|254780270|r 418 SMPGRIIQSLKR-A-KRSNPLLLLDEIDKMGSD-L-RG-----DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMT 488 (820)
Q Consensus 418 a~pg~ii~~l~~-~-~~~npv~~ldeidk~~~~-~-~g-----dp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~t 488 (820)
- |+|+|..+-+ | ..--+++++||||-++-- + .| .....|.|+|| |=..|- -|.+|=.|||
T Consensus 209 E-saRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLln--qmdgfd--------~l~rVk~Ima 277 (388)
T KOG0651 209 E-SARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLN--QMDGFD--------TLHRVKTIMA 277 (388)
T ss_pred C-HHHHHHHHHHHHHHHCCEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHH--HHCCCH--------HCCCCCEEEE
T ss_conf 5-7889999997786527557751012311457733555205999999999987--421401--------2066317985
Q ss_pred CCCCC-CCHHHC-C-CEEE-EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC--------CCCC
Q ss_conf 48655-441311-7-2479-982587868999899986089899862578131322899999997317--------7410
Q gi|254780270|r 489 ANTLN-IPLPLM-D-RMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF--------THEA 556 (820)
Q Consensus 489 an~~~-i~~~l~-d-rme~-i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y--------t~Ea 556 (820)
-|+.+ ..+||+ + ||+- |++|=-...-.+.|-|=|- +.+..+| .|.++++.++.+.+ |+|+
T Consensus 278 tNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~--~~i~~~G------eid~eaivK~~d~f~gad~rn~~tEa 349 (388)
T KOG0651 278 TNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHV--QPIDFHG------EIDDEAILKLVDGFNGADLRNVCTEA 349 (388)
T ss_pred CCCCCCCCHHHCCCCCCCCEECCCCCCHHHCEEEEEECC--CCCCCCC------CCCHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 388665665542875211100268855442402676235--4113345------54589999887415708776212346
Q ss_pred HHHH
Q ss_conf 2347
Q gi|254780270|r 557 GVRS 560 (820)
Q Consensus 557 GvR~ 560 (820)
|+=.
T Consensus 350 g~Fa 353 (388)
T KOG0651 350 GMFA 353 (388)
T ss_pred CCCC
T ss_conf 5110
No 85
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.7e-08 Score=79.16 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=124.8
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----EEEEECCCCCCHHHHCC--CC----CCCCCCCCHHHHHHHH
Q ss_conf 4244467359986056565027999999770882-----49986188888888356--32----0014567128999998
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-----YVRMSLGGVYDEADIRG--HR----RTYIGSMPGRIIQSLK 428 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-----f~~islgg~~d~~~i~g--h~----~ty~ga~pg~ii~~l~ 428 (820)
+++..... +.++||||||||...+-+++.+..+ ++.|..=..+-.-.+-. ++ --..|.--..+.+.+.
T Consensus 37 ~~~~~p~n-~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~ 115 (366)
T COG1474 37 LRGERPSN-IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLY 115 (366)
T ss_pred HCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 55899860-79988999873289999999997331567579995130787879999999982689976763268999999
Q ss_pred HC---CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCC-CCCCCEEEEECCCCCCCCCEEEEEECCCCC----CCHHHCC
Q ss_conf 32---788739999331554231177115566554060-016813320103523644279999348655----4413117
Q gi|254780270|r 429 RA---KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP-AQNSSFVDHYLEVEYDLSDVMFIMTANTLN----IPLPLMD 500 (820)
Q Consensus 429 ~~---~~~npv~~ldeidk~~~~~~gdp~~allevldp-~qn~~f~d~y~~~~~dls~v~fi~tan~~~----i~~~l~d 500 (820)
+. .-...|+.|||+|.+..... ..|++++.- +.| -++|.+|+.+|+.+ +.+-+.+
T Consensus 116 ~~~~~~~~~~IvvLDEid~L~~~~~----~~LY~L~r~~~~~-------------~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 116 DNLSKKGKTVIVILDEVDALVDKDG----EVLYSLLRAPGEN-------------KVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred HHHHHCCCEEEEEECCHHHHHCCCC----CHHHHEECCCCCC-------------CEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 9777418759999764765415464----1455111247767-------------5379999973548899987566765
Q ss_pred CE--EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 24--7998258786899989998608989986257813132289999999731774102347888799998987654211
Q gi|254780270|r 501 RM--EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVK 578 (820)
Q Consensus 501 rm--e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~ 578 (820)
|+ +-|.+++|+.+|=..|-++ ..+.|+.+ -.++++++..+...+..++| +..+-| .+||.++ ++++
T Consensus 179 ~l~~~~I~F~pY~a~el~~Il~~------R~~~~~~~--~~~~~~vl~lia~~~a~~~G--DAR~ai-dilr~A~-eiAe 246 (366)
T COG1474 179 SLGPSEIVFPPYTAEELYDILRE------RVEEGFSA--GVIDDDVLKLIAALVAAESG--DARKAI-DILRRAG-EIAE 246 (366)
T ss_pred CCCCCEEEECCCCHHHHHHHHHH------HHHHHHCC--CCCCHHHHHHHHHHHHHCCC--CHHHHH-HHHHHHH-HHHH
T ss_conf 06876355289898999999999------99854046--87480399999998876186--477608-9999999-9865
Q ss_pred CCCCEECCCHHHHHHH
Q ss_conf 7852012796786753
Q gi|254780270|r 579 NSDTTVSINENNLQDY 594 (820)
Q Consensus 579 ~~~~~~~i~~~~l~~~ 594 (820)
....+ +++.+.+...
T Consensus 247 ~~~~~-~v~~~~v~~a 261 (366)
T COG1474 247 REGSR-KVSEDHVREA 261 (366)
T ss_pred HCCCC-CCCHHHHHHH
T ss_conf 40788-5370047889
No 86
>pfam00493 MCM MCM2/3/5 family.
Probab=99.04 E-value=6.4e-09 Score=86.38 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=111.7
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHC--C---CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
Q ss_conf 877665201168999999999999842--4---44673-59986056565027999999770882499861888888883
Q gi|254780270|r 335 RILDQDHFGLEKVKERIIEYLAVQMRV--I---KNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADI 408 (820)
Q Consensus 335 ~iLd~~hyGl~~vK~rile~lav~~~~--~---~~~g~-il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i 408 (820)
+.+--..||++.||.-|+=.|.=+..+ + ..+|. -++|+|-||||||.|.|.+++...|--+. +--|.. .+.+
T Consensus 20 ~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~t-sg~~ss-~~GL 97 (327)
T pfam00493 20 RSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYT-SGKGSS-AAGL 97 (327)
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEE-CCCCCC-CCCC
T ss_conf 98597124987999999999808987658888620365118984699815609999999868870883-177665-6776
Q ss_pred CC--------CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 56--------3200145671289999983278873999933155423117711556655406001681332010352364
Q gi|254780270|r 409 RG--------HRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 (820)
Q Consensus 409 ~g--------h~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl 480 (820)
.+ ..++. -+|-+| -..+.|.++||+||++...+ +||+|.. ||..--.+.= ++.+-|
T Consensus 98 Ta~~~~d~~~~~~~l---eaGalv------lAd~Gv~cIDEfdk~~~~d~----saL~EAM--EqqtVsIaKa-Gi~~tL 161 (327)
T pfam00493 98 TAAVVRDPDTGEWTL---EAGALV------LADGGVCCIDEFDKMNEEDR----VAIHEAM--EQQTISIAKA-GIVATL 161 (327)
T ss_pred EEEEEEECCCCCEEE---ECCCEE------ECCCCEEEEECCCCCCHHHH----HHHHHHH--HHCEEEEECC-CEEEEE
T ss_conf 158998068883698---368477------55898278500555887679----9999999--8681776338-538972
Q ss_pred -CCEEEEEECCCC--------------CCCHHHCCCEEEEEEC-CCCH-HHHHHHHHHHHH-----------------HH
Q ss_conf -427999934865--------------5441311724799825-8786-899989998608-----------------98
Q gi|254780270|r 481 -SDVMFIMTANTL--------------NIPLPLMDRMEIIRIA-GYTE-EEKLQIAKNHLV-----------------KK 526 (820)
Q Consensus 481 -s~v~fi~tan~~--------------~i~~~l~drme~i~~~-~y~~-~ek~~i~~~~l~-----------------p~ 526 (820)
.++..|||||.. ++|+||+||...|.+- +|.. +.-..||+.-+- +.
T Consensus 162 ~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~~~~~~~~~~~~~~~ 241 (327)
T pfam00493 162 NARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHGEEEEIETEDYVDPE 241 (327)
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 58717998527767737888898885589767745010798840689868899999999998744688655568879999
Q ss_pred HHHHH-CCCC--CCCCCCHHHHHHHHHCCC
Q ss_conf 99862-5781--313228999999973177
Q gi|254780270|r 527 VLTEH-ALKQ--EECCISDGVLLDIIRLFT 553 (820)
Q Consensus 527 ~~~~~-~~~~--~~~~~~~~~i~~ii~~Yt 553 (820)
.++++ .+.. -.-.+++++.++|...|.
T Consensus 242 ~l~~yi~~ar~~~~P~ls~ea~~~i~~~y~ 271 (327)
T pfam00493 242 LLRKYIAYARENIFPKLSDEAREKLVNYYV 271 (327)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999999852788779899999999999
No 87
>KOG2028 consensus
Probab=99.04 E-value=2.1e-08 Score=82.52 Aligned_cols=207 Identities=21% Similarity=0.345 Sum_probs=129.9
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHH---HCC
Q ss_conf 984244467359986056565027999999770882---49986188888888356320014567128999998---327
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK---RAK 431 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~---~~~ 431 (820)
+++..+..-|-+-|-|||||||||||++||..-..+ |+.+|--... ..+.|+ |+..-+ .-.
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~-t~dvR~------------ife~aq~~~~l~ 220 (554)
T KOG2028 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK-TNDVRD------------IFEQAQNEKSLT 220 (554)
T ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCC-HHHHHH------------HHHHHHHHHHHH
T ss_conf 9998708887058866998765889999986057774279997414566-188999------------999988787652
Q ss_pred CCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCEEEE--EECCCC-CCCHHHCCCEEEEEE
Q ss_conf 8873999933155423117711556655406001681332010-352364427999--934865-544131172479982
Q gi|254780270|r 432 RSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL-EVEYDLSDVMFI--MTANTL-NIPLPLMDRMEIIRI 507 (820)
Q Consensus 432 ~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~-~~~~dls~v~fi--~tan~~-~i~~~l~drme~i~~ 507 (820)
-..-|+++|||-.. |+.-+|-|| -|. -..++|| +|-|-. +...||+.|--|+-+
T Consensus 221 krkTilFiDEiHRF--------------------NksQQD~fLP~VE--~G~I~lIGATTENPSFqln~aLlSRC~VfvL 278 (554)
T KOG2028 221 KRKTILFIDEIHRF--------------------NKSQQDTFLPHVE--NGDITLIGATTENPSFQLNAALLSRCRVFVL 278 (554)
T ss_pred CCEEEEEEHHHHHH--------------------HHHHHHCCCCEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCEEEE
T ss_conf 44069873776553--------------------2321100342130--6706998536689760112778731606673
Q ss_pred CCCCHHHHHHHHHH--HHHHHHH-HHHCCCCCCCCCCHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 58786899989998--6089899-862578131322899999997317741--023478887999989876542117852
Q gi|254780270|r 508 AGYTEEEKLQIAKN--HLVKKVL-TEHALKQEECCISDGVLLDIIRLFTHE--AGVRSFERALMKIARKAVTKIVKNSDT 582 (820)
Q Consensus 508 ~~y~~~ek~~i~~~--~l~p~~~-~~~~~~~~~~~~~~~~i~~ii~~Yt~E--aGvR~l~r~i~~i~r~~~~~~~~~~~~ 582 (820)
...+.++-..|-.+ -++-+.- ---++....+.+++.+|+++...-.-. ++.--||-.+.-.|- -.++..
T Consensus 279 ekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~t------r~g~~~ 352 (554)
T KOG2028 279 EKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCT------RSGQSS 352 (554)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------HCCCCC
T ss_conf 36888999999999987632102568899983124568899999870473188887789999998875------247765
Q ss_pred EECCCHHHHHHHHCCCCCCCCCH
Q ss_conf 01279678675305200033200
Q gi|254780270|r 583 TVSINENNLQDYLGVPRYKYGKI 605 (820)
Q Consensus 583 ~~~i~~~~l~~~lg~~~~~~~~~ 605 (820)
...++.+++++.|.....-+++.
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~ 375 (554)
T KOG2028 353 RVLLSIDDVKEGLQRSHILYDRA 375 (554)
T ss_pred CCEECHHHHHHHHHHCCCEECCC
T ss_conf 64002888999985312000455
No 88
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=9e-09 Score=85.25 Aligned_cols=188 Identities=21% Similarity=0.285 Sum_probs=122.5
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------------EEEEECCC--CCC
Q ss_conf 520116899999999999984244467359986056565027999999770882-------------49986188--888
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------------YVRMSLGG--VYD 404 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-------------f~~islgg--~~d 404 (820)
+.-|.+.|++.+...+ ..+.-+.-.+|.||-||||||+|+.+|++||-. +..|.-|| --|
T Consensus 16 eviGQe~v~~~L~~Ai-----~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g~~~~~D 90 (775)
T PRK07764 16 EVVGQEHVTEPLSTAL-----DSGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPGGPGSLD 90 (775)
T ss_pred HHCCCHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 6228599999999999-----81997633762378887888999999999668999998988887637888638988886
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CCCCCCEEEEECCCC
Q ss_conf 88835632001456712899999832------78873999933155423117711556655406-001681332010352
Q gi|254780270|r 405 EADIRGHRRTYIGSMPGRIIQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PAQNSSFVDHYLEVE 477 (820)
Q Consensus 405 ~~~i~gh~~ty~ga~pg~ii~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevld-p~qn~~f~d~y~~~~ 477 (820)
.-||.+-+.+=|.- |..|+.. ...--||++||.+.|+..- .+|||.+|. |-
T Consensus 91 viEiDAAS~~gVdd-----iReL~e~~~y~P~~~ryKVyIIDEaHmls~~a----fNALLKtLEEPP------------- 148 (775)
T PRK07764 91 VVEIDAASHGGVDD-----ARELRERAFFAPAQSRYRIFIIDEAHMVTTAG----FNALLKIVEEPP------------- 148 (775)
T ss_pred EEEECCCCCCCHHH-----HHHHHHHCCCCCCCCCEEEEEEECHHHHCHHH----HHHHHHHHCCCC-------------
T ss_conf 68731565568899-----99999854768767863599985354407999----999988622786-------------
Q ss_pred CCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 3644279999348655-441311724799825878689998999860898998625781313228999999973177410
Q gi|254780270|r 478 YDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEA 556 (820)
Q Consensus 478 ~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~Ea 556 (820)
.+|+||+.--..+ ||...+.|-....+.--+.++-.. | +-+++ ..+.|.++++++..|++. -+-
T Consensus 149 ---~hvvFIlaTTep~kip~TI~SRcq~f~Fr~i~~~~~~~----~-l~~i~-----~~E~i~~~~~al~li~r~--~~G 213 (775)
T PRK07764 149 ---EHLIFIFATTEPEKVIGTIRSRTHHYPFRLVPPGTMRP----Y-LERIC-----AQEGVVVDDAVLPLVIRA--GGG 213 (775)
T ss_pred ---CCEEEEEECCCHHHCCHHHHHHCCCCCCCCCCHHHHHH----H-HHHHH-----HHCCCCCCHHHHHHHHHH--CCC
T ss_conf ---46279995487354716776410234526699999999----9-99999-----983998798999999998--289
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2347888799998
Q gi|254780270|r 557 GVRSFERALMKIA 569 (820)
Q Consensus 557 GvR~l~r~i~~i~ 569 (820)
++|+--..|..++
T Consensus 214 s~RDalS~ldQl~ 226 (775)
T PRK07764 214 SPRDTLSVLDQLL 226 (775)
T ss_pred CHHHHHHHHHHHH
T ss_conf 6676899999998
No 89
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=99.02 E-value=8.1e-10 Score=93.16 Aligned_cols=97 Identities=31% Similarity=0.530 Sum_probs=84.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHH-------
Q ss_conf 88478887306899999999983688875--610663685030250006568999999970996998036775-------
Q gi|254780270|r 687 GATPKDGPSAGIAMATAIVSIMTCIPVYK--NVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENI------- 757 (820)
Q Consensus 687 Ga~pKDGPSAGi~i~tal~S~~~~~~v~~--~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~------- 757 (820)
..+ +|||||.-++.++++-++.--.+. .||=||-|.--|+|-|||||..|+.||.+||..-++.|.+|-
T Consensus 230 ~~I--GGPSAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf~P~~~~~e~~s~s 307 (342)
T COG3480 230 ENI--GGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFFVPADNCAEEMSDS 307 (342)
T ss_pred CCC--CCCCHHHEEEHHHHHHCCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHCCC
T ss_conf 447--997543335298886405311358669841113346883357454767767787659859984187620220138
Q ss_pred --HHHHHCCHHHHCCCEEEECCCHHHHHHH
Q ss_conf --5077614887709799981939998887
Q gi|254780270|r 758 --KDLMDIPENVKNGLEIIPVSFMGEVLKH 785 (820)
Q Consensus 758 --~d~~~ip~~~~~~l~~~~v~~~~evl~~ 785 (820)
..-..--+.+..+|+++||.+++|.++.
T Consensus 308 ny~~a~~~ak~l~t~mkivpv~T~q~aldy 337 (342)
T COG3480 308 NYDEALVAAEDLSTAMKIVPVKTLQEALDY 337 (342)
T ss_pred CHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf 888889988754036247851000326667
No 90
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.00 E-value=2.1e-07 Score=74.81 Aligned_cols=217 Identities=27% Similarity=0.393 Sum_probs=141.3
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHC--------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC
Q ss_conf 665201168999999999999842--------444673599860565650279999997708824998618888888835
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRV--------IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~--------~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~ 409 (820)
=+|.-||+++|+.+-|-+- +-++ +-..+.-.+|.||||+|||-|||++|.--+-.| |++-|-.=-|
T Consensus 540 W~diGGlee~kq~lreave-WPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anf--i~v~GPe~ls--- 613 (980)
T TIGR01243 540 WEDIGGLEEVKQELREAVE-WPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF--IAVRGPEILS--- 613 (980)
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCE--EEECCCHHHH---
T ss_conf 0014667899999987752-344405899860788997348746898616888887740145646--7740731223---
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHCCCCH----------HHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 63200145671289999983278873-999933155423117711----------5566554060016813320103523
Q gi|254780270|r 410 GHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDLRGDP----------SAALLEVLDPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 410 gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~~gdp----------~~allevldp~qn~~f~d~y~~~~~ 478 (820)
-+||.---+|-+..++|....| |+++||||-+... ||.- .+-||.=+|- =-
T Consensus 614 ----kWvGese~~ir~if~~arq~aP~~~f~deidaiaP~-rG~~~~~~~vtd~~~nqll~e~dG-------------~~ 675 (980)
T TIGR01243 614 ----KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA-RGASLDEKGVTDRIVNQLLTELDG-------------LE 675 (980)
T ss_pred ----HHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHC-------------CC
T ss_conf ----440324799999999864128737873021110541-244210010268999999986404-------------43
Q ss_pred CCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 644279999348655-44131-----172479982587868999899986089899862578131322899999997317
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
..|+|..|+..|-.+ +.++| +||+ |-+|.--.+-..+|.+=|-- ...| .+++.+ +-+..-.+.|
T Consensus 676 ~~~~vvvi~atnrPdi~dPallrPGr~dr~--i~vP~Pd~~ar~~ifk~ht~-----~~~l-~~dv~l--~~la~~teGy 745 (980)
T TIGR01243 676 ELSDVVVIAATNRPDILDPALLRPGRLDRL--ILVPAPDEEARLEIFKIHTR-----SMPL-AEDVDL--EELAKKTEGY 745 (980)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEE--EEECCCCHHHHHHHHHHHHC-----CCCC-CCCCCH--HHHHHHHCCC
T ss_conf 436658986158874236100488741216--86059855676767655311-----1353-013438--9998651687
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCEE--CCCHHHHHHHHC
Q ss_conf 7410234788879999898765421178-5201--279678675305
Q gi|254780270|r 553 THEAGVRSFERALMKIARKAVTKIVKNS-DTTV--SINENNLQDYLG 596 (820)
Q Consensus 553 t~EaGvR~l~r~i~~i~r~~~~~~~~~~-~~~~--~i~~~~l~~~lg 596 (820)
|-- .|.++||.+++.-+... ..++ .+....+..|+.
T Consensus 746 tGa--------di~a~~rea~~~~~r~~~~~~~~~~~~~~~~~~~~~ 784 (980)
T TIGR01243 746 TGA--------DIEAVVREAALAALREVVGKPWDIEVKLRELINYLQ 784 (980)
T ss_pred CCH--------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 632--------299999999999999973450245678999999998
No 91
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.99 E-value=3.6e-08 Score=80.72 Aligned_cols=190 Identities=16% Similarity=0.319 Sum_probs=120.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCC-CCCC---CCHHHHHHHHHCC
Q ss_conf 4446735998605656502799999977088---249986188888---8883563200-1456---7128999998327
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRT-YIGS---MPGRIIQSLKRAK 431 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~t-y~ga---~pg~ii~~l~~~~ 431 (820)
.....||| +.|.+||||+.+|+.|...=.| ||+.|.++++.+ ++++-||... +.|+ .+|++-+
T Consensus 26 A~~~~pVL-I~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~~~~~~~g~le~------ 98 (325)
T PRK11608 26 APLDKPVL-IIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER------ 98 (325)
T ss_pred HCCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHC------
T ss_conf 68899989-88989837999999999658867999778877989977889987277556767753246873435------
Q ss_pred CCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-C-C-C-----CHHHCCCE-
Q ss_conf 887399993315542311771155665540600168133201035236442799993486-5-5-4-----41311724-
Q gi|254780270|r 432 RSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-L-N-I-----PLPLMDRM- 502 (820)
Q Consensus 432 ~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-~-~-i-----~~~l~drm- 502 (820)
..+..++||||+.++...+. .||.+|+ +..|.-.==.-+.. .+|=+|||.|. + . + -.-|..|+
T Consensus 99 a~gGTL~L~eI~~l~~~~Q~----~Ll~~l~---~~~~~r~g~~~~~~-~~~RiIa~t~~~l~~lv~~g~fr~dLy~rL~ 170 (325)
T PRK11608 99 ADGGTLFLDELATAPMLVQE----KLLRVIE---YGELERVGGSQPLQ-VNVRLVCATNADLPAMVNEGTFRADLLDRLA 170 (325)
T ss_pred CCCCEEEEECHHHCCHHHHH----HHHHHHH---CCCEEECCCCCCCC-CCEEEEECCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 68986997374547999999----9999986---49088579987665-6468871332208999983956799985653
Q ss_pred -EEEEECCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf -7998258786--899989998608989986257813132289999999731774102347888799998
Q gi|254780270|r 503 -EIIRIAGYTE--EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIA 569 (820)
Q Consensus 503 -e~i~~~~y~~--~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~ 569 (820)
..|++|+--. ++=..++..| +-+...+.|... .-.|+++|++. ...|.+---||+|+..+...+
T Consensus 171 ~~~I~lPpLReR~eDI~~L~~~f-l~~~~~~~~~~~-~~~~s~~a~~~-L~~y~WPGNvrEL~n~ierav 237 (325)
T PRK11608 171 FDVVQLPPLRERQSDIMLMAEHF-AIQMCRELGLPL-FPGFTERARET-LLNYRWPGNIRELKNVVERSV 237 (325)
T ss_pred HHHCCCCCHHHCCCCHHHHHHHH-HHHHHHHCCCCC-CCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHH
T ss_conf 01115868454710199999999-999999829998-88889999999-961999965999999999999
No 92
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.99 E-value=2e-08 Score=82.69 Aligned_cols=202 Identities=21% Similarity=0.370 Sum_probs=132.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCC-CCCCC---CHHHHHHHHHCCC
Q ss_conf 44673599860565650279999997708---8249986188888---8883563200-14567---1289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYD---EADIRGHRRT-YIGSM---PGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d---~~~i~gh~~t-y~ga~---pg~ii~~l~~~~~ 432 (820)
....||| +.|++||||+.+|+.|...=. .||+.+.++++.+ ++++=||.+. |.||. +|.+-++
T Consensus 159 ~~~~pVL-I~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ga~~~~~g~~e~a------ 231 (469)
T PRK10923 159 RSSISVL-INGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA------ 231 (469)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC------
T ss_conf 8899789-989898269999999997488779995787678899778999970876678788642458736643------
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEE--ECCCCCCCCCEEEEEECCC-C-C------CCHHHCCCE
Q ss_conf 8739999331554231177115566554060016813320--1035236442799993486-5-5------441311724
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDH--YLEVEYDLSDVMFIMTANT-L-N------IPLPLMDRM 502 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~--y~~~~~dls~v~fi~tan~-~-~------i~~~l~drm 502 (820)
.|..++||||+.++.+.+. .||.+|. +..|..- .-.++. +|-+|||.|. + + .-.-|..|+
T Consensus 232 ~~GTLfLdeI~~L~~~~Q~----kLl~~L~---~~~~~~~g~~~~~~~---d~RiIaat~~~L~~~v~~g~Fr~dLyyrL 301 (469)
T PRK10923 232 DGGTLFLDEIGDMPLDVQT----RLLRVLA---DGQFYRVGGYAPVKV---DVRIIAATHQNLEQRVQEGKFREDLFHRL 301 (469)
T ss_pred CCCCEEHHHHHHCCHHHHH----HHHHHHH---CCCEEECCCCCEEEE---CCEEEEECCCCHHHHHHHCCHHHHHHHHH
T ss_conf 8992656636648999999----9999985---593785799851221---43799707879999866081779999864
Q ss_pred EE--EEECCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79--98258786--899989998608989986257813132289999999731774102347888799998987654211
Q gi|254780270|r 503 EI--IRIAGYTE--EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVK 578 (820)
Q Consensus 503 e~--i~~~~y~~--~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~ 578 (820)
-+ |++|+-.. ++-..++ +|++-+..++.|. ....|+++++.. ...|.+-.-||+|+..+..++-- ..
T Consensus 302 ~~~~I~lPpLReR~eDI~~L~-~~fl~~~~~~~~~--~~~~~s~~a~~~-L~~y~WPGNvrEL~n~ier~~~~-----~~ 372 (469)
T PRK10923 302 NVIRVHLPPLRERREDIPRLA-RHFLQVAARELGV--EAKLLHPETEAA-LTRLAWPGNVRQLENTCRWLTVM-----AA 372 (469)
T ss_pred HHHCCCCCCHHHCHHHHHHHH-HHHHHHHHHHCCC--CCCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHHH-----CC
T ss_conf 424015846544653499999-9999999998599--978789999999-97499998799999999999985-----79
Q ss_pred CCCCEECCCHHHHHHH
Q ss_conf 7852012796786753
Q gi|254780270|r 579 NSDTTVSINENNLQDY 594 (820)
Q Consensus 579 ~~~~~~~i~~~~l~~~ 594 (820)
+. .|+.+++..-
T Consensus 373 ~~----~i~~~dl~~~ 384 (469)
T PRK10923 373 GQ----EVLIQDLPGE 384 (469)
T ss_pred CC----CCCHHHCCHH
T ss_conf 98----2547757298
No 93
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.99 E-value=4.4e-08 Score=80.05 Aligned_cols=186 Identities=16% Similarity=0.256 Sum_probs=119.5
Q ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 998424446735998605656502799999977088---24998618888888835632001456712899999832788
Q gi|254780270|r 357 VQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS 433 (820)
Q Consensus 357 v~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~ 433 (820)
+..+.+...++.|.++||+|.|||.|..+++..... ....+++....+ + .--+++++ ..
T Consensus 29 l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~------~--------~~~~l~~l----~~ 90 (226)
T TIGR03420 29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ------A--------DPEVLEGL----EQ 90 (226)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHH------H--------HHHHHHHC----CC
T ss_conf 998764668886999899999889999999999862699579952999877------5--------39999727----44
Q ss_pred CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCC---EEEE
Q ss_conf 7399993315542311771155665540600168133201035236442799993486----5544-131172---4799
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDR---MEII 505 (820)
Q Consensus 434 npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~dr---me~i 505 (820)
..++++|.||.+.... +-..+|.++++--+++ ++ -.+.|++. ++.- +-|+.| +-++
T Consensus 91 ~d~l~iDDi~~i~~~~--~~e~~lF~l~N~~~~~-------------~~-~ilits~~~p~~l~~~l~dL~SRl~~~~~~ 154 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP--EWQEALFHLYNRVREA-------------GG-RLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred CCEEEEECHHHHCCCH--HHHHHHHHHHHHHHHH-------------CC-EEEEECCCCHHHCCCCHHHHHHHHHCCCEE
T ss_conf 8999996633343783--7899999999999865-------------28-289867888232032017799999688568
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 82587868999899986089899862578131322899999997317741023478887999989876542117852012
Q gi|254780270|r 506 RIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVS 585 (820)
Q Consensus 506 ~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~ 585 (820)
++.....+++..|.+++. .. .++.++++++.||+++.+|. +|.|+..+.++-+..... +-.
T Consensus 155 ~I~~pdd~~~~~iL~k~~-----~~-----r~i~i~~~vi~yl~~r~~R~--~~~l~~~l~~Ld~~sl~~-------kr~ 215 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRA-----AR-----RGLQLPDEVADYLLRHGSRD--MGSLMALLDALDRASLAA-------KRK 215 (226)
T ss_pred ECCCCCHHHHHHHHHHHH-----HH-----CCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHH-------CCC
T ss_conf 527999999999999999-----98-----59988999999999863798--999999999999999980-------899
Q ss_pred CCHHHHHHHH
Q ss_conf 7967867530
Q gi|254780270|r 586 INENNLQDYL 595 (820)
Q Consensus 586 i~~~~l~~~l 595 (820)
||-..+++.|
T Consensus 216 ITi~l~kevL 225 (226)
T TIGR03420 216 ITIPFVKEVL 225 (226)
T ss_pred CCHHHHHHHH
T ss_conf 9999999984
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.98 E-value=8.3e-09 Score=85.50 Aligned_cols=175 Identities=27% Similarity=0.410 Sum_probs=119.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH
Q ss_conf 9877665201168999999999999842444-------673599860565650279999997708824998618888888
Q gi|254780270|r 334 IRILDQDHFGLEKVKERIIEYLAVQMRVIKN-------KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA 406 (820)
Q Consensus 334 ~~iLd~~hyGl~~vK~rile~lav~~~~~~~-------~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~ 406 (820)
=++-=+|.=||++==+-|-|.+..=..+|.. ...-++|+||||+|||-|||++|.-.+--|.|+- .|
T Consensus 117 P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvV------gS 190 (364)
T TIGR01242 117 PNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV------GS 190 (364)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEE------HH
T ss_conf 823340267878999999888734688831677628898986570075797688999986314551268860------44
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHH-----HCCCCH--HHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 83563200145671289999983278873-999933155423-----117711--5566554060016813320103523
Q gi|254780270|r 407 DIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGS-----DLRGDP--SAALLEVLDPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 407 ~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~-----~~~gdp--~~allevldp~qn~~f~d~y~~~~~ 478 (820)
|+- +-|+|----.+-.-.+-|+..-| +|++||||-+++ +..||= .-+|+-+|-- =+.|-
T Consensus 191 ElV---~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAE--lDGFd-------- 257 (364)
T TIGR01242 191 ELV---RKYIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAE--LDGFD-------- 257 (364)
T ss_pred HHH---HHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HCCCC--------
T ss_conf 444---44413316899999998530698168610133354321146778731578899999975--24888--------
Q ss_pred CCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 644279999348655-44131-----1724799825878689998999860898998
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLT 529 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~ 529 (820)
...+|=.|+..|-.| +++++ .||+ ||+|--+.+-.++|.+=|--.-.+.
T Consensus 258 ~rg~VkviaATNR~DilDPA~LRPGRFDR~--IEVPlP~~~GR~eIlkiHTr~~~la 312 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPAILRPGRFDRI--IEVPLPDFEGRLEILKIHTRKMKLA 312 (364)
T ss_pred CCCCEEEEEECCCCHHCCCCCCCCCCCCCE--EECCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 767616887207620204321488861325--7316978322056655521000012
No 95
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.3e-08 Score=82.11 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=97.3
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCC-CCC
Q ss_conf 6520116899999999999984244467359986056565027999999770882499861888888883563200-145
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRT-YIG 417 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~t-y~g 417 (820)
+|.+|.+.+++++...+ ..+.-+.-+.|+||+|||||++|+.+|+++-.+- +- +.|--. .+.
T Consensus 4 ~~iiGq~~i~~~L~~~i-----~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~------~~------~~~~D~~~~~ 66 (313)
T PRK05564 4 RTIIGHENIKNRIDNSI-----IKGKFSHASLIVGEDGIGKSILAKEIANKILGKS------EQ------REYVDIIEYK 66 (313)
T ss_pred HHCCCHHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC------CC------CCCCCEEEEE
T ss_conf 23268299999999999-----8799875043279998509999999999982899------77------8898658863
Q ss_pred CCCHH---------HHHHHHHC--CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 67128---------99999832--78873999933155423117711556655406001681332010352364427999
Q gi|254780270|r 418 SMPGR---------IIQSLKRA--KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI 486 (820)
Q Consensus 418 a~pg~---------ii~~l~~~--~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi 486 (820)
+--++ +++.+... ....=|+++||.|+|+.. .++|||-.| |-|= ++++||
T Consensus 67 ~~~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~----AaNALLKtL-------------EEPP--~~t~fI 127 (313)
T PRK05564 67 PINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQ----AQNAFLKTI-------------EEPP--KGVFII 127 (313)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHH----HHHHHHHCC-------------CCCC--CCEEEE
T ss_conf 322569998999999999840862589569998077775899----999984550-------------3689--985899
Q ss_pred EECCCCC-CCHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 9348655-441311724799825878689998
Q gi|254780270|r 487 MTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQ 517 (820)
Q Consensus 487 ~tan~~~-i~~~l~drme~i~~~~y~~~ek~~ 517 (820)
.++++.+ +++..+.|--.+.+++-+.++-..
T Consensus 128 L~t~~~~~lLpTI~SRCQ~~~f~~l~~~~i~~ 159 (313)
T PRK05564 128 LLCENLEQILDTIKSRCQIYKLNRLSKEDIEK 159 (313)
T ss_pred EEECCHHHCCCHHHCCCEEEECCCCCHHHHHH
T ss_conf 86498354757787065356689989999999
No 96
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.97 E-value=1.5e-08 Score=83.67 Aligned_cols=202 Identities=17% Similarity=0.336 Sum_probs=129.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCH---HHHCCCCCC-CCCC---CCHHHHHHHHHCCC
Q ss_conf 44673599860565650279999997708---82499861888888---883563200-1456---71289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYDE---ADIRGHRRT-YIGS---MPGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d~---~~i~gh~~t-y~ga---~pg~ii~~l~~~~~ 432 (820)
....|+| +.|.+||||..+|+.|...-. .||+.+.++++.++ +++=||.+- +.|| .+|++-+ .
T Consensus 160 ~s~~pVL-I~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~~~------A 232 (441)
T PRK10365 160 PSEATVL-IHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE------A 232 (441)
T ss_pred CCCCCEE-EECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEE------C
T ss_conf 8899489-98999810999999999657877898079878989845558986177556878965346898778------8
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEC--CCCCCCCCEEEEEECC-CC-C-C-----CHHHCCCE
Q ss_conf 873999933155423117711556655406001681332010--3523644279999348-65-5-4-----41311724
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL--EVEYDLSDVMFIMTAN-TL-N-I-----PLPLMDRM 502 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~--~~~~dls~v~fi~tan-~~-~-i-----~~~l~drm 502 (820)
.+..++||||+-++...+. .||.+|. +..|.-.-- .+++ +|-+||+.| ++ . + -.-|..|+
T Consensus 233 ~gGTLfLdeI~~l~~~~Q~----kLl~~l~---~~~~~~~g~~~~~~~---d~RiIaat~~~l~~~v~~g~Fr~dLy~rL 302 (441)
T PRK10365 233 DGGTLFLDEIGDISPMMQV----RLLRAIQ---EREVQRVGSNQTISV---DVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 (441)
T ss_pred CCCEECCCCCCCCCHHHHH----HHHHHHH---HHHHCCCCCCCEEEC---CCEEEECCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 9982550231529999999----9998777---521000588734413---63799837889999988198258999886
Q ss_pred EE--EEECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79--98258786-8999899986089899862578131322899999997317741023478887999989876542117
Q gi|254780270|r 503 EI--IRIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKN 579 (820)
Q Consensus 503 e~--i~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~ 579 (820)
-+ |++|+.-. .|-+-.--+|++-+...++|.. ...|++++++. ...|.+-.-||+|+..+...+- ...+
T Consensus 303 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~--~~~~s~~a~~~-L~~y~WPGNvREL~n~iera~~-----~~~~ 374 (441)
T PRK10365 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQAMDL-LIHYDWPGNIRELENAVERAVV-----LLTG 374 (441)
T ss_pred CCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHH-----HCCC
T ss_conf 01113782600062009999999999999984999--88889999999-9709999899999999999999-----5789
Q ss_pred CCCEECCCHHHHHH
Q ss_conf 85201279678675
Q gi|254780270|r 580 SDTTVSINENNLQD 593 (820)
Q Consensus 580 ~~~~~~i~~~~l~~ 593 (820)
-.|+.+++..
T Consensus 375 ----~~i~~~~l~~ 384 (441)
T PRK10365 375 ----EYISERELPL 384 (441)
T ss_pred ----CCCCHHHCCH
T ss_conf ----8688465754
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.96 E-value=2.6e-08 Score=81.75 Aligned_cols=193 Identities=24% Similarity=0.345 Sum_probs=137.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-------------EECCCCCCHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 244467359986056565027999999770882499-------------8618888888835632001456712899999
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVR-------------MSLGGVYDEADIRGHRRTYIGSMPGRIIQSL 427 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~-------------islgg~~d~~~i~gh~~ty~ga~pg~ii~~l 427 (820)
..+-=+...+|.||=||||||+||-.|||||=+ -. |.-|.--|.-||-|=++|=|.- |+.|
T Consensus 31 ~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~-----IR~l 104 (363)
T TIGR02397 31 KNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDD-----IREL 104 (363)
T ss_pred HHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHH-----HHHH
T ss_conf 718966234502859976355899999986588-7877877775022776528986668864865687889-----9999
Q ss_pred HHCCCCCE------EEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHC
Q ss_conf 83278873------99993315542311771155665540-60016813320103523644279999348655-441311
Q gi|254780270|r 428 KRAKRSNP------LLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLM 499 (820)
Q Consensus 428 ~~~~~~np------v~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~ 499 (820)
+..=..-| |+++||+-=+|++. -+|||-.| .|= ++|.||+---+.+ ||...+
T Consensus 105 ~e~v~y~P~~~kYKvYIIDEVHMLS~~A----FNALLKTLEEPP----------------~hV~FIlATTE~~KiP~TIl 164 (363)
T TIGR02397 105 RENVKYAPSKGKYKVYIIDEVHMLSKSA----FNALLKTLEEPP----------------EHVVFILATTEPHKIPATIL 164 (363)
T ss_pred HHHHCCCCCCCCCCEEEEECCCCCCHHH----HHHHHHHHCCCC----------------CCEEEEEECCCHHHCCCCCE
T ss_conf 8730368755443358873230286568----999876522798----------------76288873487112055402
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 72479982587868999899986089899862578131322899999997317741023478887999989876542117
Q gi|254780270|r 500 DRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKN 579 (820)
Q Consensus 500 drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~ 579 (820)
.|=-...+.-=+.++=+ +-++.. ++++.+.++++||..|... -+-|+|+-.-.+..+.-- +
T Consensus 165 SRCQrF~Fk~i~~~~i~---------~~L~~I-~~~E~I~~e~~AL~~IA~~--a~GS~RDAlsllDQ~~~~-------~ 225 (363)
T TIGR02397 165 SRCQRFDFKRIPLEDIV---------ERLKKI-LDKEGIKIEDEALELIARA--ADGSMRDALSLLDQAISF-------G 225 (363)
T ss_pred EECEEECCCCCCHHHHH---------HHHHHH-HHHHCCCCCHHHHHHHHHH--CCCCCCHHHHHHHHHHHH-------C
T ss_conf 10003126789989999---------999999-9870883177899999996--289610688999999982-------6
Q ss_pred CCCEECCCHHHHHHHHCCC
Q ss_conf 8520127967867530520
Q gi|254780270|r 580 SDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 580 ~~~~~~i~~~~l~~~lg~~ 598 (820)
+...-.||.+++.+.||--
T Consensus 226 ~~~DG~i~~~~v~~~lGl~ 244 (363)
T TIGR02397 226 NGSDGKITYEDVNEMLGLV 244 (363)
T ss_pred CCCCCCCCHHHHHHHHCCC
T ss_conf 8878865789999983577
No 98
>KOG0743 consensus
Probab=98.95 E-value=1.7e-07 Score=75.68 Aligned_cols=176 Identities=23% Similarity=0.311 Sum_probs=107.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHH-
Q ss_conf 5998605656502799999977088249986188888888356320014567128999998327887399993315542-
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMG- 446 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~- 446 (820)
-.+|+||||+||+|+--.+|.-|+---+-+.|-.|.|-+|+| -|..+-...-++++-.||---
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr----------------~LL~~t~~kSIivIEDIDcs~~ 300 (457)
T KOG0743 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLR----------------HLLLATPNKSILLIEDIDCSFD 300 (457)
T ss_pred CCEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH----------------HHHHHCCCCCEEEEEECCCCCC
T ss_conf 412047999988899999972058736774400236838999----------------9997289971899961243230
Q ss_pred ---------HHCCCC----HHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCC--CEEEEEECCC
Q ss_conf ---------311771----15566554060016813320103523644279999348655-4413117--2479982587
Q gi|254780270|r 447 ---------SDLRGD----PSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMD--RMEIIRIAGY 510 (820)
Q Consensus 447 ---------~~~~gd----p~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~d--rme~i~~~~y 510 (820)
.++.|+ .-|-||.-+|- ----- =+.-++|+|-|..+ .+++|+- ||.+=-.=||
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG---------lwSsc--g~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgy 369 (457)
T KOG0743 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDG---------LWSSC--GDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY 369 (457)
T ss_pred CCCCCCCCCCCCCCCCCEEEHHHHHHHHCC---------CCCCC--CCCEEEEEECCCHHHCCHHHCCCCCCEEEEECCC
T ss_conf 443455566454677660664775664134---------30048--8734999946871006886628875225667266
Q ss_pred CH-HHHHHHHHHHHHH----HHHHHHCCCCCCCCCC-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86-8999899986089----8998625781313228-9999999731774102347888799998987
Q gi|254780270|r 511 TE-EEKLQIAKNHLVK----KVLTEHALKQEECCIS-DGVLLDIIRLFTHEAGVRSFERALMKIARKA 572 (820)
Q Consensus 511 ~~-~ek~~i~~~~l~p----~~~~~~~~~~~~~~~~-~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~ 572 (820)
-. +-=...|++||=- ..+++..=......++ .++-+.++.+-. .....|++.+..+-++.
T Consensus 370 Ctf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~--dad~~lk~Lv~~l~~~~ 435 (457)
T KOG0743 370 CTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKN--DADVALKGLVEALESKK 435 (457)
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
T ss_conf 9879999999983389887306799998763374689999999863565--38899999999987634
No 99
>KOG0737 consensus
Probab=98.95 E-value=6.4e-08 Score=78.79 Aligned_cols=203 Identities=22% Similarity=0.372 Sum_probs=129.0
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCC--------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 520116899999999999984244--------467359986056565027999999770882499861888888883563
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIK--------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~--------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
|--||+++|+..-|-+-.-...++ .....++|.||||+|||-+||.+|+..|-.|.-+++|++.|.-+ |-
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf--gE 170 (386)
T KOG0737 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF--GE 170 (386)
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHH--HH
T ss_conf 1335289999999877520124666414531468643051189982188999999987279710001365532667--77
Q ss_pred CCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHH-HHCCCCH-HHHHHHHCCCCCCCCEEEEECCCCCCCC-CEEEE
Q ss_conf 200145671289999983--27887399993315542-3117711-5566554060016813320103523644-27999
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMG-SDLRGDP-SAALLEVLDPAQNSSFVDHYLEVEYDLS-DVMFI 486 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~-~~~~gdp-~~allevldp~qn~~f~d~y~~~~~dls-~v~fi 486 (820)
.- +.+.++-. .+-.-.+|++||||-+- .-..+|- +.|+. +..|.-++=+.--+=+ +|+..
T Consensus 171 ~e--------Klv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~m-------K~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737 171 AQ--------KLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMM-------KNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred HH--------HHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHH-------HHHHHHHHCCCCCCCCCEEEEE
T ss_conf 88--------89999982065348615656658889864046427999999-------9999998616467887159997
Q ss_pred EECCCC-CCCHHHCCCEE---EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 934865-54413117247---99825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 487 MTANTL-NIPLPLMDRME---IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 487 ~tan~~-~i~~~l~drme---~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
.--|.. ++..+.+-||. .|.+|. .+.+..|-+=+|-+..++ . .|+=.-+...-+.|| |
T Consensus 236 gATNRP~DlDeAiiRR~p~rf~V~lP~--~~qR~kILkviLk~e~~e------~--~vD~~~iA~~t~GyS---G----- 297 (386)
T KOG0737 236 GATNRPFDLDEAIIRRLPRRFHVGLPD--AEQRRKILKVILKKEKLE------D--DVDLDEIAQMTEGYS---G----- 297 (386)
T ss_pred ECCCCCCCHHHHHHHHCCCEEEECCCC--HHHHHHHHHHHHCCCCCC------C--CCCHHHHHHHCCCCC---H-----
T ss_conf 079998437899998476436537984--444999999994243468------7--769888887608986---7-----
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 879999898765421
Q gi|254780270|r 563 RALMKIARKAVTKIV 577 (820)
Q Consensus 563 r~i~~i~r~~~~~~~ 577 (820)
+.|-.+||.++..-+
T Consensus 298 SDLkelC~~Aa~~~i 312 (386)
T KOG0737 298 SDLKELCRLAALRPI 312 (386)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 789999998767689
No 100
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=2.2e-08 Score=82.24 Aligned_cols=173 Identities=19% Similarity=0.249 Sum_probs=118.6
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------------CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHH
Q ss_conf 98424446735998605656502799999977088-------------24998618888888835632001456712899
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------------QYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------------~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii 424 (820)
..+..+.-+...+|.||.||||||+||-+|++||- .+.-|.-|.--|--||.+-++|-|.-+-- ++
T Consensus 30 nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~~EiDaAs~~~vdd~re-l~ 108 (717)
T PRK08853 30 NALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDLLEIDAASRTKVEDTRE-LL 108 (717)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHH-HH
T ss_conf 99970997405761088988898999999998678999999978887026767447877524540565678899999-99
Q ss_pred HHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCC
Q ss_conf 99983--2788739999331554231177115566554060016813320103523644279999348655-44131172
Q gi|254780270|r 425 QSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDR 501 (820)
Q Consensus 425 ~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~dr 501 (820)
..... +...--|+++||+..+|.+. .+|||..|. -|= ..|.||+---+.+ ||...+.|
T Consensus 109 ~~~~y~p~~~~yKvyiiDEvHmls~~a----fnAlLKtlE-------------EPP--~hv~FilaTT~~~kip~TilSR 169 (717)
T PRK08853 109 DNVQYKPARGRFKVYLIDEVHMLSRHS----FNALLKTLE-------------EPP--EYVKFLLATTDPQKLPVTILSR 169 (717)
T ss_pred HHCCCCCCCCCEEEEEEECHHHCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCHHHHHH
T ss_conf 855548877854799983054438999----999987603-------------787--5648998438734373889876
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 4799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 502 MEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 502 me~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
---..+..-+.++-.. .++.. ++.+.+.+++++|..|.+. -+.++|+--
T Consensus 170 c~~f~l~~~~~~~i~~---------~l~~i-~~~E~i~~~~~al~~ia~~--a~Gs~Rdal 218 (717)
T PRK08853 170 CLQFHLKPISVDQIHQ---------QLDFV-LDKEQVSAEARALGLIAHA--ADGSMRDAL 218 (717)
T ss_pred HHHCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf 5442326899999999---------99999-9975987699999999997--688377888
No 101
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.94 E-value=4.8e-08 Score=79.74 Aligned_cols=190 Identities=31% Similarity=0.538 Sum_probs=115.4
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCCCC------HHH-----------HCCCCCCCCC--
Q ss_conf 8424446735998605656502799999977088--249986188888------888-----------3563200145--
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR--QYVRMSLGGVYD------EAD-----------IRGHRRTYIG-- 417 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r--~f~~islgg~~d------~~~-----------i~gh~~ty~g-- 417 (820)
...++..|..++|+||||+|||-||-.||+.||- ||+.+|=.-+-. |+- ||-.+..|.|
T Consensus 43 Ik~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKTE~L~qafRrsIGvrIkE~~eVyEGEV 122 (395)
T pfam06068 43 IKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEALTQAFRKAIGVRIKEEKEVYEGEV 122 (395)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEE
T ss_conf 97277577389987799988899999999974879973450011121256548899999998875568678889999999
Q ss_pred -----------------------------------CCCHHHHHHHHHCCCCC-EEEEEEC----HHHHHHHCC-------
Q ss_conf -----------------------------------67128999998327887-3999933----155423117-------
Q gi|254780270|r 418 -----------------------------------SMPGRIIQSLKRAKRSN-PLLLLDE----IDKMGSDLR------- 450 (820)
Q Consensus 418 -----------------------------------a~pg~ii~~l~~~~~~n-pv~~lde----idk~~~~~~------- 450 (820)
-+..+|+++|.+-++.. -||.+|- +-|+|.++.
T Consensus 123 ~ei~~~~~~~p~~~~~k~~~~~~itLkT~~~~~~l~l~~~i~e~l~kekV~~GDVI~Id~~sG~V~klGRs~~~a~~~D~ 202 (395)
T pfam06068 123 VELEIEEAENPLSGYGKTIKHGKITLKTTKMEKTLKLGPKIYEQLQKEKVQAGDVIYIDKNTGKVKKLGRSFARATDFDL 202 (395)
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCHHHHHHCCC
T ss_conf 99997414688898765403799999975881787258899999997498668789998587159997623203433266
Q ss_pred ----------CC-----------------HHHH----HHHHCCCCCC----------------------------CCEEE
Q ss_conf ----------71-----------------1556----6554060016----------------------------81332
Q gi|254780270|r 451 ----------GD-----------------PSAA----LLEVLDPAQN----------------------------SSFVD 471 (820)
Q Consensus 451 ----------gd-----------------p~~a----llevldp~qn----------------------------~~f~d 471 (820)
|+ -++| ++.+.-|... --|.|
T Consensus 203 ~~~~~V~~P~Gev~K~KEvv~~vTLHDlDv~Nar~qg~~slf~~~~~EIt~elR~eInk~V~~~i~eG~AElvpGVLFID 282 (395)
T pfam06068 203 EATEFVPCPKGEVHKRKEVVQTVTLHDIDVANARPQGILSLFSPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFID 282 (395)
T ss_pred CCCEEEECCCCCCEEEEEEEEEEEHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
T ss_conf 65479778998624688999986123412221575256764179876069999999999999998648679842746885
Q ss_pred E----------ECC--CCCCCCCEEEEEEC---------C--CCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 0----------103--52364427999934---------8--655-4413117247998258786899989998608989
Q gi|254780270|r 472 H----------YLE--VEYDLSDVMFIMTA---------N--TLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKV 527 (820)
Q Consensus 472 ~----------y~~--~~~dls~v~fi~ta---------n--~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~ 527 (820)
. ||+ +..+||-+++.+|- | +.. ||.-|+||+-+|...+|+.+|-.+|.+-.
T Consensus 283 EvHMLDiEcFsfLnralEs~laPivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRllII~T~py~~~ei~~Ii~iR----- 357 (395)
T pfam06068 283 EVHMLDIECFSFLNRALESELAPIVILATNRGICTIRGTDIISPHGIPLDLLDRLLIITTEPYTREEIKQILEIR----- 357 (395)
T ss_pred CCHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHHH-----
T ss_conf 000000589988877650567876999844652035256775888998777730258856889989999999987-----
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 98625781313228999999973177410234
Q gi|254780270|r 528 LTEHALKQEECCISDGVLLDIIRLFTHEAGVR 559 (820)
Q Consensus 528 ~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR 559 (820)
.+.+++.++++|+.++.+- .-+.+.|
T Consensus 358 -----a~~E~v~l~~~al~~L~~i-g~~~SLR 383 (395)
T pfam06068 358 -----AQEEGVEISEEALDLLAKI-GEETSLR 383 (395)
T ss_pred -----HHHHCCCCCHHHHHHHHHH-HHHCCHH
T ss_conf -----7760787798999999986-5320299
No 102
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.93 E-value=6.2e-08 Score=78.89 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=133.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCCC-CCCCCHHHHHHHHHCCCCCE
Q ss_conf 446735998605656502799999977088---249986188888---88835632001-45671289999983278873
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRTY-IGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~ty-~ga~pg~ii~~l~~~~~~np 435 (820)
....||| +.|.+||||+.+|++|..+=.| ||+.+.++.+.+ ++|+=|+..+. -+..+|++-++ .+.
T Consensus 346 ~~~~pVL-I~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG~~~~~~~~g~~g~~e~A------~gG 418 (639)
T PRK11388 346 KSSFPIL-LCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLGSDRTDSENGRLSKFELA------HGG 418 (639)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHCC------CCC
T ss_conf 8899689-889898109999999995577789981898789898467899873877676434668624403------698
Q ss_pred EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCEEEEEECCC-C-C-C-----CHHHCCCEEE-
Q ss_conf 99993315542311771155665540600168133201--035236442799993486-5-5-4-----4131172479-
Q gi|254780270|r 436 LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHY--LEVEYDLSDVMFIMTANT-L-N-I-----PLPLMDRMEI- 504 (820)
Q Consensus 436 v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y--~~~~~dls~v~fi~tan~-~-~-i-----~~~l~drme~- 504 (820)
.++||||+-|..+.+ .+||.||+ ...|+..- -.+++ +|-+||+.|. + + + -.-|..|+-.
T Consensus 419 TL~LdeI~~lp~~~Q----~~LlrvL~---~~~~~r~g~~~~~~v---dvRiiaat~~~l~~~v~~g~fr~dLyyrl~~~ 488 (639)
T PRK11388 419 TLFLEKVEYLSVELQ----SALLQVLK---TGVITRLDSRRLIPV---DVRVIATTTADLAMLVEQNRFSRQLYYALHAF 488 (639)
T ss_pred EEEECCHHHCCHHHH----HHHHHHHH---CCCEEECCCCCEEEE---EEEEEEECCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 288467264999999----99999986---593785699946664---27999736450899987498549999876744
Q ss_pred -EEECCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -982587868-999899986089899862578131322899999997317741023478887999989876542117852
Q gi|254780270|r 505 -IRIAGYTEE-EKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDT 582 (820)
Q Consensus 505 -i~~~~y~~~-ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~ 582 (820)
|++|+.-.- |.+...-+|++-+...++|- .+.|+++++.. ...|..---||+|+..+...+.. . .
T Consensus 489 ~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~---~~~ls~~a~~~-L~~y~WPGNvrEL~nvl~~a~~~-----~----~ 555 (639)
T PRK11388 489 EITIPPLRMRREDIPALVNNKLRSLEKRFST---RLKIDDDALAR-LVSYRWPGNDFELRSVIENLALS-----S----D 555 (639)
T ss_pred HCCCCCHHHCHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHHH-----C----C
T ss_conf 1057332325343999999999999997199---99989999999-97289997999999999999983-----8----9
Q ss_pred EECCCHHHHHHHH
Q ss_conf 0127967867530
Q gi|254780270|r 583 TVSINENNLQDYL 595 (820)
Q Consensus 583 ~~~i~~~~l~~~l 595 (820)
.-.|+.++|.+.+
T Consensus 556 ~~~I~~~~Lp~~~ 568 (639)
T PRK11388 556 NGRIRLSDLPEHL 568 (639)
T ss_pred CCCCCHHHCCHHH
T ss_conf 9842679780877
No 103
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.9e-08 Score=79.68 Aligned_cols=182 Identities=25% Similarity=0.341 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHH-------HHHCHHHHHHHHHHHHHHHHHCCC------CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 322106889987766-------520116899999999999984244------4673599860565650279999997708
Q gi|254780270|r 325 KTKKNLDFAIRILDQ-------DHFGLEKVKERIIEYLAVQMRVIK------NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 325 ~~~~dl~~a~~iLd~-------~hyGl~~vK~rile~lav~~~~~~------~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
.-.++.++|+..... |.-|-+++||-..|.+--.+-..+ .-+.-..|+||||+|||.|||.+|--.+
T Consensus 129 ~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 129 AFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred CCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCC
T ss_conf 66777588987413566767566418679999999999986385566752353456526855999872789999845468
Q ss_pred CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHCC-C-CHHHHHHHHCCCCCCCC
Q ss_conf 82499861888888883563200145671289999983278873-999933155423117-7-11556655406001681
Q gi|254780270|r 392 RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDLR-G-DPSAALLEVLDPAQNSS 468 (820)
Q Consensus 392 r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~~-g-dp~~allevldp~qn~~ 468 (820)
-||..+|= .+++ .-|||--.-|+=+-..+|+.+-| +|++||||.+|..-. | -+.+--.|=+= .|=-.
T Consensus 209 VPFf~iSG-----S~FV----emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTL-NQlLv 278 (596)
T COG0465 209 VPFFSISG-----SDFV----EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTL-NQLLV 278 (596)
T ss_pred CCCEECCC-----HHHH----HHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHH-HHHHH
T ss_conf 98353034-----4464----43147883888999998551599669876343314545778899806999999-88885
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3320103523644279999348655-44131-----172479982587868999899986
Q gi|254780270|r 469 FVDHYLEVEYDLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNH 522 (820)
Q Consensus 469 f~d~y~~~~~dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~ 522 (820)
..|-|- .=+.|..|+--|-.+ ..++| .||-.+|+.|..-..| +|-+-|
T Consensus 279 EmDGF~----~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe--~IlkvH 332 (596)
T COG0465 279 EMDGFG----GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGRE--QILKVH 332 (596)
T ss_pred HHCCCC----CCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHH--HHHHHH
T ss_conf 201578----887548852678743331765288776625544785156578--887886
No 104
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.91 E-value=5.6e-08 Score=79.21 Aligned_cols=137 Identities=26% Similarity=0.321 Sum_probs=92.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCC----CCHHHHCCCCCCCCCCC--CHHHHHHHHHCCC---
Q ss_conf 46735998605656502799999977088--2499861888----88888356320014567--1289999983278---
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGR--QYVRMSLGGV----YDEADIRGHRRTYIGSM--PGRIIQSLKRAKR--- 432 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r--~f~~islgg~----~d~~~i~gh~~ty~ga~--pg~ii~~l~~~~~--- 432 (820)
.|..+ -|.||||||||-+|+-+|.+|+- .-.|+.+=.+ .+|.++.|-|-.=.|-. ||.+.+..++|..
T Consensus 193 tKknv-IL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p~ 271 (459)
T PRK11331 193 IKKNI-ILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPE 271 (459)
T ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCCC
T ss_conf 58827-96589998878999999999707887784689983588661787646056888613268369999999984989
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHH---HHHHCCCCC-C--CCEE-------EEECCCCCCCCCEEEEEECCCCC-----C
Q ss_conf 873999933155423117711556---655406001-6--8133-------20103523644279999348655-----4
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAA---LLEVLDPAQ-N--SSFV-------DHYLEVEYDLSDVMFIMTANTLN-----I 494 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~a---llevldp~q-n--~~f~-------d~y~~~~~dls~v~fi~tan~~~-----i 494 (820)
.+-++++|||. ||+++.. ||-++.+.- + .+-. |.-|.+| +++++|.|+|+.+ +
T Consensus 272 ~~y~~iidein------r~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP---~Nl~iigtmNtadrs~~~~ 342 (459)
T PRK11331 272 KKYVFIIDEIN------RANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP---ENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CCEEEEEEHHH------CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCC---CCEEEEEECCCCCHHHHHH
T ss_conf 87699984320------33889999999999641256765225630036888533468---8659998503341068878
Q ss_pred CHHHCCCEEEEEECCC
Q ss_conf 4131172479982587
Q gi|254780270|r 495 PLPLMDRMEIIRIAGY 510 (820)
Q Consensus 495 ~~~l~drme~i~~~~y 510 (820)
+.+|+-|...+++.+=
T Consensus 343 d~alrRrf~f~~~~pd 358 (459)
T PRK11331 343 DYALRRRFSFIDIEPG 358 (459)
T ss_pred HHHHHHHHCCEECCCC
T ss_conf 9999865021215898
No 105
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.8e-08 Score=82.98 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=111.8
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCHHHHCCC----C
Q ss_conf 6652011689999999999998424446735998605656502799999977088-2499861888888883563----2
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMSLGGVYDEADIRGH----R 412 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~islgg~~d~~~i~gh----~ 412 (820)
..+.+|.+.+...++..+. ...-...++|.||+||||||+|..+|+.|-- +-..-.-++..+ .-++ |
T Consensus 22 ~~~liGq~~~~~~L~~a~~-----~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~---pd~~~~~~r 93 (352)
T PRK09112 22 NNRLFGHEEARAFLAQAYR-----EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLAD---PDPASPLWR 93 (352)
T ss_pred HHHHCCHHHHHHHHHHHHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCHHHH
T ss_conf 6462786999999999998-----49965246535899808999999999998669986668655678---887877899
Q ss_pred CCCCCCCCH-------------H----H----HHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CC
Q ss_conf 001456712-------------8----9----9999832------78873999933155423117711556655406-00
Q gi|254780270|r 413 RTYIGSMPG-------------R----I----IQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PA 464 (820)
Q Consensus 413 ~ty~ga~pg-------------~----i----i~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevld-p~ 464 (820)
+-.-|+-|+ + | |+.+++- ...--|+++||.|+|+.+ -++|||-+|. |.
T Consensus 94 ~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~----aaNALLK~LEEPp 169 (352)
T PRK09112 94 QIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRN----AANAILKTLEEPP 169 (352)
T ss_pred HHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH----HHHHHHHHHHCCC
T ss_conf 997489999565534322021454335777999999998454886688069998187874699----9999999853489
Q ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 16813320103523644279999348655-44131172479982587868999899986089899862578131322899
Q gi|254780270|r 465 QNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDG 543 (820)
Q Consensus 465 qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~ 543 (820)
.+++||...|+.+ ++++++.|--.+.+..-+.++-.... +..+... .+ ..++
T Consensus 170 ----------------~~~~fiLit~~~~~ll~TI~SRCq~~~f~pL~~~di~~~L---------~~i~~~~-~~-~~~~ 222 (352)
T PRK09112 170 ----------------ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKAL---------SHLGSKQ-GI-SAGE 222 (352)
T ss_pred ----------------CCEEEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHHCC-CC-CCHH
T ss_conf ----------------8748998869977776899974332148893989999999---------9875126-89-9879
Q ss_pred HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999997317741023478887
Q gi|254780270|r 544 VLLDIIRLFTHEAGVRSFERA 564 (820)
Q Consensus 544 ~i~~ii~~Yt~EaGvR~l~r~ 564 (820)
++..++.. -+..||.--+.
T Consensus 223 ~~~~l~~~--a~GS~~~Al~L 241 (352)
T PRK09112 223 ETEALLQR--SEGSVRKALLL 241 (352)
T ss_pred HHHHHHHH--HCCCHHHHHHH
T ss_conf 99999987--08998899987
No 106
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=3e-08 Score=81.34 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=120.5
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------------CEEEEECCCCCCHHH
Q ss_conf 2011689999999999998424446735998605656502799999977088-------------249986188888888
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------------QYVRMSLGGVYDEAD 407 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------------~f~~islgg~~d~~~ 407 (820)
.-|-+-|.+-+. ..+..+.-....+|.||-||||||+|+-+|++||- -+..|.-|.--|--|
T Consensus 18 ~vGQ~~v~~~L~-----nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~~D~~E 92 (704)
T PRK08691 18 LVGQEHVVKALQ-----NALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (704)
T ss_pred HCCCHHHHHHHH-----HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf 418699999999-----999819975237502789878889999999996799999999787777678785589987477
Q ss_pred HCCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEE
Q ss_conf 3563200145671289999983--27887399993315542311771155665540600168133201035236442799
Q gi|254780270|r 408 IRGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMF 485 (820)
Q Consensus 408 i~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~f 485 (820)
|.+-++|=|.-+-. +++...- +...--|+++||+..++..- .+|||..|. -| =..|.|
T Consensus 93 iDaAs~~~vdd~R~-l~~~~~y~P~~~~yKVyiiDEvhmLs~~a----fNAlLKtLE-------------EP--P~~v~F 152 (704)
T PRK08691 93 IDAASNTGIDNIRE-VLENAQYAPTAGKYKVYIIDEVHMLSKSA----FNAMLKTLE-------------EP--PEHVKF 152 (704)
T ss_pred EECCCCCCHHHHHH-HHHHCCCCCCCCCEEEEEEECHHHCCHHH----HHHHHHHHC-------------CC--CCCEEE
T ss_conf 42454458899999-99853468867853599983154438999----999998614-------------79--756089
Q ss_pred EEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99348655-44131172479982587868999899986089899862578131322899999997317741023478
Q gi|254780270|r 486 IMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSF 561 (820)
Q Consensus 486 i~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l 561 (820)
|+.-.+.+ ||...+.|---..+..-+.++-.. .+... +..+.+.++++++..|.+. -+.++|+-
T Consensus 153 ilaTTdp~Klp~TIlSRC~~f~l~~~~~~~i~~---------~L~~i-~~~E~i~~e~~al~~ia~~--a~Gs~RDa 217 (704)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVAD---------HLAHV-LDSEKIAYEPPALQLLGRA--AAGSMRDA 217 (704)
T ss_pred EEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHH
T ss_conf 985488464758999888771026899999999---------99999-9983985689999999997--57857779
No 107
>KOG0740 consensus
Probab=98.88 E-value=3.3e-08 Score=81.02 Aligned_cols=203 Identities=23% Similarity=0.332 Sum_probs=127.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCC----CCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
Q ss_conf 652011689999999999998424----446735--99860565650279999997708824998618888888835632
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVI----KNKGLI--LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~----~~~g~i--l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~ 412 (820)
.|.-||+.+|.-+.|+.-.--+++ ..+++. |+|.||||+|||-||+.||.-.+--|..||-- .+-+
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas------sLts-- 224 (428)
T KOG0740 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS------SLTS-- 224 (428)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHH------HHHH--
T ss_conf 57740566899865423220455376523544531112005898844799999986206657630688------8653--
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCCE-EEEEECHHHHHHH--CCCCHHH--HHHHHCCCCCCCCEEEEEC-CCCCCCCCEEE
Q ss_conf 00145671289999983-278873-9999331554231--1771155--6655406001681332010-35236442799
Q gi|254780270|r 413 RTYIGSMPGRIIQSLKR-AKRSNP-LLLLDEIDKMGSD--LRGDPSA--ALLEVLDPAQNSSFVDHYL-EVEYDLSDVMF 485 (820)
Q Consensus 413 ~ty~ga~pg~ii~~l~~-~~~~np-v~~ldeidk~~~~--~~gdp~~--allevldp~qn~~f~d~y~-~~~~dls~v~f 485 (820)
+|+|.- -+.|.++-+ |++.-| ||++||||++=+. -+-.++| ...|.|=+- | +. ..+=| +|++
T Consensus 225 -K~~Ge~-eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~------~-~~~s~~~d--rvlv 293 (428)
T KOG0740 225 -KYVGES-EKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQF------D-GKNSAPDD--RVLV 293 (428)
T ss_pred -HCCCHH-HHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHH------C-CCCCCCCC--EEEE
T ss_conf -246707-78999999998713970898402567886368754544555655777654------0-44578887--0799
Q ss_pred EEECCCC-CCCHHHCCC-EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 9934865-544131172-47998258786899989998608989986257813132289999999731774102347888
Q gi|254780270|r 486 IMTANTL-NIPLPLMDR-MEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFER 563 (820)
Q Consensus 486 i~tan~~-~i~~~l~dr-me~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r 563 (820)
|++-|-. .+..+.+-| +-++.+|---.+. +.++|.+.+++++- ....-.=++|-.+-+.|+- -
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~et-----r~~~~~~ll~~~~~--~l~~~d~~~l~~~Tegysg--------s 358 (428)
T KOG0740 294 IGATNRPWELDEAARRRFVKRLYIPLPDYET-----RSLLWKQLLKEQPN--GLSDLDISLLAKVTEGYSG--------S 358 (428)
T ss_pred EECCCCCHHHHHHHHHHHCCEEEECCCCHHH-----HHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCC--------C
T ss_conf 8158883677888888710315535988789-----99999999976878--7417789999988617562--------2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799998987654
Q gi|254780270|r 564 ALMKIARKAVTK 575 (820)
Q Consensus 564 ~i~~i~r~~~~~ 575 (820)
.|.++|..++..
T Consensus 359 di~~l~kea~~~ 370 (428)
T KOG0740 359 DITALCKEAAMG 370 (428)
T ss_pred CHHHHHHHHHCC
T ss_conf 188998776238
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.87 E-value=1.6e-07 Score=75.78 Aligned_cols=212 Identities=21% Similarity=0.311 Sum_probs=139.2
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CEEEEECCCCCCH--------
Q ss_conf 011689999999999998424446735998605656502799999977088--------2499861888888--------
Q gi|254780270|r 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR--------QYVRMSLGGVYDE-------- 405 (820)
Q Consensus 342 yGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r--------~f~~islgg~~d~-------- 405 (820)
-+-|+-++.|..|+- .+++.+..|.+|-..|.||||||.-.+++-+.|.. +|..+-+.|++=.
T Consensus 270 pcRe~E~~~I~~Fie-~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~P~qaY~~ 348 (650)
T PTZ00112 270 LGREKEAKEIRTFLE-TGIKQGGTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVHPNAAYRV 348 (650)
T ss_pred CCCHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHH
T ss_conf 770789999999998-6411688665699978999980036999999999999708999815999736377987889999
Q ss_pred --HHHCCCCCC-CCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCC-CCCC
Q ss_conf --883563200-145671289999983278873999933155423117711556655406001681332010352-3644
Q gi|254780270|r 406 --ADIRGHRRT-YIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVE-YDLS 481 (820)
Q Consensus 406 --~~i~gh~~t-y~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~-~dls 481 (820)
-.+.|.+.+ ...| -.+.+..-..+..-.|.|+||+|-+-...+. .|..++| -| .--|
T Consensus 349 L~e~Ltg~k~~~~~~A--~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~----VlYNLFd-------------WPT~~~S 409 (650)
T PTZ00112 349 FYKKLFNKKPPNALNS--YKELDKLFNNNRTPSILIVDEADYIVTKTQK----VLFTLFD-------------WPTKKNS 409 (650)
T ss_pred HHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCEEEEECHHHHHHHCCCC----EEEECCC-------------CCCCCCC
T ss_conf 9999848988867899--9999998268997189997157777636774----5777366-------------8898887
Q ss_pred CEEEEEECCCCCCCHHHC----CC--EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 279999348655441311----72--479982587868999899986089899862578131322899999997317741
Q gi|254780270|r 482 DVMFIMTANTLNIPLPLM----DR--MEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHE 555 (820)
Q Consensus 482 ~v~fi~tan~~~i~~~l~----dr--me~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~E 555 (820)
+...|+-||+.|.|.-|+ .| +..+..++||.++=.+|.+.-| + ++ -.|.++||...-+.-+.=
T Consensus 410 kLIVIaIANTMDLPERL~~RVsSRLGltRltF~PYt~~QL~eII~sRL-----~--~~----~~f~~dAIQl~ARKVAav 478 (650)
T PTZ00112 410 KLILIIISNTMDLPYKMKPSCRSRLAFGRLVFSPYKYQQIEKVIKERL-----E--NC----EIIDHTALQLCARRVTNY 478 (650)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHH-----C--CC----CCCCHHHHHHHHHHHHHH
T ss_conf 079999850678606566665552288500439989999999999986-----2--67----778878999998888750
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 0234788879999898765421178520127967867
Q gi|254780270|r 556 AGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQ 592 (820)
Q Consensus 556 aGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~ 592 (820)
+| +..|.| .|||++.- ...+. .|+..++.
T Consensus 479 SG--DARRAL-dICRRAvE-~~~~~----ki~~~~i~ 507 (650)
T PTZ00112 479 SG--DMRKAL-QICKLAFE-NKNGG----KITPRDMT 507 (650)
T ss_pred CC--HHHHHH-HHHHHHHH-HCCCC----EEEHHHHH
T ss_conf 31--489999-99999997-35687----34248999
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=6.8e-08 Score=78.61 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=134.8
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC------------------EEEEECCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 84244467359986056565027999999770882------------------499861888888883563200145671
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ------------------YVRMSLGGVYDEADIRGHRRTYIGSMP 420 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~------------------f~~islgg~~d~~~i~gh~~ty~ga~p 420 (820)
.+..+.-+....|.||-||||||+||-+|+|||-. +..|.-|.--|.-||.+-++|=|..+-
T Consensus 38 ~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r 117 (600)
T PRK09111 38 AFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIMEGRHVDVIEMDAASHTGVDDIR 117 (600)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 99729842047645789878999999999996698876668998898998865898866899875885155457888999
Q ss_pred HHHHHHHHHC--CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHH
Q ss_conf 2899999832--788739999331554231177115566554060016813320103523644279999348655-4413
Q gi|254780270|r 421 GRIIQSLKRA--KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLP 497 (820)
Q Consensus 421 g~ii~~l~~~--~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~ 497 (820)
- |+...+-+ ...--|+++||+--+|.+. .+|||-.|. -|= .+|.||+-.-... ||..
T Consensus 118 ~-~~~~~~~~p~~~~~kv~iidevhmls~~a----fnallktle-------------epp--~~~~fi~att~~~k~p~t 177 (600)
T PRK09111 118 E-IIESVRYRPVSARYKVYIIDEVHMLSTAA----FNALLKTLE-------------EPP--PHVKFIFATTEIRKVPVT 177 (600)
T ss_pred H-HHHHHCCCCCCCCEEEEEEECCCCCCHHH----HHHHHHHHH-------------CCC--CCEEEEEECCCHHHCCHH
T ss_conf 9-99860538877754699960011057999----999998762-------------598--654999962853437589
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11724799825878689998999860898998625781313228999999973177410234788879999898765421
Q gi|254780270|r 498 LMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIV 577 (820)
Q Consensus 498 l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~ 577 (820)
.+.|--...+.--+.++-.. .++.. ++.+.+.++++++..|.+. -|.+||+---.+...+ +
T Consensus 178 i~src~~f~~~~~~~~~~~~---------~l~~i-~~~e~~~~~~~al~~ia~~--a~GS~RDaLSlLDQai---~---- 238 (600)
T PRK09111 178 VLSRCQRFDLRRIEAEVLAA---------HLARI-AEKEGVEVEPDALALIARA--AEGSVRDGLSLLDQAI---A---- 238 (600)
T ss_pred HHHHHHEECCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCCCHHHHHHHHHH---H----
T ss_conf 98544120105799999999---------99999-9860768667799999997--4898421899999999---7----
Q ss_pred CCCCCEECCCHHHHHHHHCCC
Q ss_conf 178520127967867530520
Q gi|254780270|r 578 KNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 578 ~~~~~~~~i~~~~l~~~lg~~ 598 (820)
.+. -.|+.+++.+.||--
T Consensus 239 ~~~---~~i~~~~v~~mLGl~ 256 (600)
T PRK09111 239 HGA---GEVTAEQVRDMLGLA 256 (600)
T ss_pred CCC---CCCCHHHHHHHHCCC
T ss_conf 279---875699999986887
No 110
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=5.1e-07 Score=71.96 Aligned_cols=187 Identities=17% Similarity=0.290 Sum_probs=125.5
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9842444673599860565650279999997---7088249986188888888356320014567128999998327887
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN 434 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~---al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n 434 (820)
.+...+..++.+.++||+|+|||.|..+++. +-+++-..+++.-... ..-.+++++...
T Consensus 31 ~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~--------------~~~~~l~~l~~~---- 92 (229)
T PRK06893 31 RKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------------FSPAVLENLEQQ---- 92 (229)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH--------------CCHHHHHHHHHC----
T ss_conf 97550246987999899999889999999999997189859997377564--------------069999876547----
Q ss_pred EEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCC---EEEEE
Q ss_conf 399993315542311771155665540600168133201035236442799993486----5544-131172---47998
Q gi|254780270|r 435 PLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDR---MEIIR 506 (820)
Q Consensus 435 pv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~dr---me~i~ 506 (820)
.++.+|.||.+.... +-.-+|.+++.-- .+-.+.++++|++. +++- +=|+.| +.+++
T Consensus 93 d~l~iDDi~~i~g~~--~~e~~lF~l~N~l-------------~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~ 157 (229)
T PRK06893 93 DLVCLDDLQAVIGNE--EWELAIFDLFNRI-------------KESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQ 157 (229)
T ss_pred CEEEEECHHHHCCCH--HHHHHHHHHHHHH-------------HHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEE
T ss_conf 979996723424883--8999999999999-------------9759917998579883322100267999996883699
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 25878689998999860898998625781313228999999973177410234788879999898765421178520127
Q gi|254780270|r 507 IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSI 586 (820)
Q Consensus 507 ~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i 586 (820)
+..-+.+++..|-+++. + ..++.++++++.||+++++|. +|.|...+..+-+.... .+-.|
T Consensus 158 i~~~dd~~~~~iL~~~a-----~-----~rgl~l~~~v~~yl~~r~~R~--~~~l~~~l~~Ld~~sl~-------~kr~i 218 (229)
T PRK06893 158 LNDLTDEQKIEVLQRNA-----Y-----QRGIELSDETANFLLKRLDRD--MHTLFDALDLLDKASLQ-------AQRKL 218 (229)
T ss_pred ECCCCHHHHHHHHHHHH-----H-----HCCCCCCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH-------HCCCC
T ss_conf 66777579999999999-----9-----649999989999999983478--99999999999999998-------08999
Q ss_pred CHHHHHHHHC
Q ss_conf 9678675305
Q gi|254780270|r 587 NENNLQDYLG 596 (820)
Q Consensus 587 ~~~~l~~~lg 596 (820)
|-..+++.||
T Consensus 219 TiplvkevL~ 228 (229)
T PRK06893 219 TIPFVKEILG 228 (229)
T ss_pred CHHHHHHHHC
T ss_conf 9999999868
No 111
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=5.8e-08 Score=79.11 Aligned_cols=171 Identities=18% Similarity=0.238 Sum_probs=109.4
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------------CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHH
Q ss_conf 98424446735998605656502799999977088-------------24998618888888835632001456712899
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------------QYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------------~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii 424 (820)
..+..+.-+...+|.||.||||||+||-+||+||- -+..|.-|.--|--||.+-++|-|.-+--. +
T Consensus 30 nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~d~iEiDaAS~~~vd~~r~l-~ 108 (816)
T PRK07003 30 HALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAAL-L 108 (816)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-H
T ss_conf 999709863147511789888889999999986789999989787755578775588775478635543576899999-9
Q ss_pred HHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCC
Q ss_conf 99983--2788739999331554231177115566554060016813320103523644279999348655-44131172
Q gi|254780270|r 425 QSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDR 501 (820)
Q Consensus 425 ~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~dr 501 (820)
..... +...--|+++||+--++..- .+|||..|. -|= ..|.||+---+.+ ||...+.|
T Consensus 109 ~~~~y~p~~~r~KvyiiDEvHmls~~a----fnalLKtlE-------------epP--~hv~FilaTTd~~k~p~tilSR 169 (816)
T PRK07003 109 ERAVYAPVDARFKVYMIDEVHMLTNHA----FNAMLKTLE-------------EPP--PHVKFILATTDPQKIPVTVLSR 169 (816)
T ss_pred HHCCCCCCCCCEEEEEEECHHHCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCHHHHHH
T ss_conf 862247866744799984154339999----999998403-------------798--6648999558801152889877
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 47998258786899989998608989986257813132289999999731774102347
Q gi|254780270|r 502 MEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS 560 (820)
Q Consensus 502 me~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~ 560 (820)
---..+...+.++-.. .++.. ++++.+.+++++|..|.+. -..++|+
T Consensus 170 c~~f~l~~~~~~~i~~---------~l~~i-~~~E~i~~e~~al~lia~~--a~GsmRD 216 (816)
T PRK07003 170 CLQFNLKQMPAGHIVS---------HLERI-LGEERIAFEPQALRLLARA--AQGSMRD 216 (816)
T ss_pred HHHCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHH
T ss_conf 7652236799999999---------99999-9982997799999999997--6773788
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=7e-08 Score=78.52 Aligned_cols=171 Identities=20% Similarity=0.290 Sum_probs=116.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------------EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 4467359986056565027999999770882-------------499861888888883563200145671289999983
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------------YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKR 429 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~-------------f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~ 429 (820)
+.-.....|.||-||||||+|+-+|++||-. +..|.-|.--|--||.+-++|=|..+-. ++....-
T Consensus 35 ~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d~~eidaas~~~vd~~re-l~~~~~y 113 (643)
T PRK07994 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQY 113 (643)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHH-HHHHCCC
T ss_conf 986634874589988888999999999679999999978767768988658988758863677788899999-9984466
Q ss_pred --CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEE
Q ss_conf --2788739999331554231177115566554060016813320103523644279999348655-4413117247998
Q gi|254780270|r 430 --AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIR 506 (820)
Q Consensus 430 --~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~ 506 (820)
+...--|+++||+..+|... .+|||..|. -| -..|.||+.--+.+ ||...+.|---..
T Consensus 114 ~p~~~r~kvyiidEvhmls~~a----fnalLKtlE-------------eP--p~hv~filaTT~~~k~p~TilSRC~~f~ 174 (643)
T PRK07994 114 APARGRFKVYLIDEVHMLSRHS----FNALLKTLE-------------EP--PAHVKFLLATTDPQKLPVTILSRCLQFH 174 (643)
T ss_pred CCCCCCEEEEEEECHHHCCHHH----HHHHHHHHC-------------CC--CHHCEEEEECCCHHHCCHHHHHHHHHEE
T ss_conf 8877853699972210158999----999998623-------------78--6100899860774548478997776500
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 25878689998999860898998625781313228999999973177410234788879
Q gi|254780270|r 507 IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERAL 565 (820)
Q Consensus 507 ~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i 565 (820)
+..-+.++-.. .++.. ++.+.+.++++++..|-+. -+.++|+--..+
T Consensus 175 ~~~~~~~~i~~---------~l~~i-~~~e~i~~~~~al~~ia~~--a~gs~rdalsl~ 221 (643)
T PRK07994 175 LKALDVEQIRH---------QLEHI-LNEEHIAHEPRALQLLARA--ADGSLRDALSLT 221 (643)
T ss_pred CCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 16699999999---------99999-9975998788999999997--478656688899
No 113
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.79 E-value=2.2e-07 Score=74.71 Aligned_cols=197 Identities=18% Similarity=0.260 Sum_probs=131.3
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------------CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 8424446735998605656502799999977088-------------249986188888888356320014567128999
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------------QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQ 425 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------------~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~ 425 (820)
.+..+.-....+|.|+-||||||+||-+||+||- .+.-|.-|---|--||.+-+||-|..+-- ++.
T Consensus 31 ~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~d~as~~~v~~~r~-~~~ 109 (705)
T PRK05648 31 ALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFVDLIEVDAASRTKVEDTRE-LLD 109 (705)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHH-HHH
T ss_conf 9970986304650078988898999999998677899988978776004666248977634451554478899999-998
Q ss_pred HHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCE
Q ss_conf 9983--2788739999331554231177115566554060016813320103523644279999348655-441311724
Q gi|254780270|r 426 SLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRM 502 (820)
Q Consensus 426 ~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drm 502 (820)
...- +...--|+++||+.-+|.+. .+|||..|. -|= ..|.||+---+.+ ||...+.|-
T Consensus 110 ~~~~~p~~~~~kv~~idevhmls~~~----fnallktle-------------epp--~~v~f~~att~~~k~p~t~~src 170 (705)
T PRK05648 110 NVQYAPTRGRYKVYLIDEVHMLSSHS----FNALLKTLE-------------EPP--PHVKFLLATTDPQKLPVTILSRC 170 (705)
T ss_pred HCCCCCCCCCEEEEEEEHHHHCCHHH----HHHHHHHCC-------------CCC--CCEEEEEECCCHHHCCHHHHHHH
T ss_conf 55517767745799984265417999----999987404-------------797--54599984287353758999766
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79982587868999899986089899862578131322899999997317741023478887999989876542117852
Q gi|254780270|r 503 EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDT 582 (820)
Q Consensus 503 e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~ 582 (820)
--.++..-+.++-.. .++. =+..+.+.++++++..|-+. -+.++|+--..+...+. .+
T Consensus 171 ~~~~~~~~~~~~~~~---------~l~~-~~~~e~~~~~~~~~~~~~~~--~~g~~rd~ls~~dq~~~-------~~--- 228 (705)
T PRK05648 171 LQFSLKNMSPERVVE---------HLSH-VLGAENVPFEEDALWLLGRA--ADGSMRDAMSLTDQAIA-------FG--- 228 (705)
T ss_pred HHCCCCCCCHHHHHH---------HHHH-HHHHCCCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH-------CC---
T ss_conf 430236899999999---------9999-99975997789999999997--48967779999999986-------06---
Q ss_pred EECCCHHHHHHHHCC
Q ss_conf 012796786753052
Q gi|254780270|r 583 TVSINENNLQDYLGV 597 (820)
Q Consensus 583 ~~~i~~~~l~~~lg~ 597 (820)
.-.|+.+.+.+.||.
T Consensus 229 ~~~~~~~~v~~mlg~ 243 (705)
T PRK05648 229 EGKVLAADVRAMLGT 243 (705)
T ss_pred CCCCCHHHHHHHHCC
T ss_conf 884079999998588
No 114
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.79 E-value=1.3e-07 Score=76.46 Aligned_cols=211 Identities=25% Similarity=0.322 Sum_probs=141.2
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-------------EEEECCCCCCHHHH
Q ss_conf 01168999999999999842444673599860565650279999997708824-------------99861888888883
Q gi|254780270|r 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-------------VRMSLGGVYDEADI 408 (820)
Q Consensus 342 yGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-------------~~islgg~~d~~~i 408 (820)
-|-+-|..-+-+-+. .+.-..-..|.||-||||||+||-+|+||+-.- .-|.-|.--|.-||
T Consensus 19 vGQe~v~~~L~nal~-----~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 19 VGQEHVVKTLSNALE-----NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred CCCHHHHHHHHHHHH-----HCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 364899999999998-----084233365137777671049999999956889877772253166686514886410113
Q ss_pred CCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 563200145671289999983--278873999933155423117711556655406001681332010352364427999
Q gi|254780270|r 409 RGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI 486 (820)
Q Consensus 409 ~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi 486 (820)
.+-+.|=|.-+- .|++.... +....=|+++||+.=+|..- .+|||-.| +-|. +.|.||
T Consensus 94 DaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~a----fNALLKTL-------------EEPP--~hV~FI 153 (515)
T COG2812 94 DAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQA----FNALLKTL-------------EEPP--SHVKFI 153 (515)
T ss_pred HHHHCCCHHHHH-HHHHHHCCCCCCCCCEEEEEECHHHHHHHH----HHHHHCCC-------------CCCC--CCEEEE
T ss_conf 644454867999-999872468866664189983187643788----88875111-------------3686--674899
Q ss_pred EECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9348655-441311724799825878689998999860898998625781313228999999973177410234788879
Q gi|254780270|r 487 MTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERAL 565 (820)
Q Consensus 487 ~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i 565 (820)
+-.-+.+ ||...+.|--...+.--+.++-.. .++.. +..+.+.++++++..|.+. -+.+.|+....+
T Consensus 154 lATTe~~Kip~TIlSRcq~f~fkri~~~~I~~---------~L~~i-~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslL 221 (515)
T COG2812 154 LATTEPQKIPNTILSRCQRFDFKRLDLEEIAK---------HLAAI-LDKEGINIEEDALSLIARA--AEGSLRDALSLL 221 (515)
T ss_pred EECCCCCCCCHHHHHCCCCCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 85388676840455212202225799999999---------99999-8744875479999999998--289745677789
Q ss_pred HHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 9998987654211785201279678675305200
Q gi|254780270|r 566 MKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 566 ~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
..+.-.. . -.||.+.+.+.+|.-.
T Consensus 222 Dq~i~~~-------~---~~It~~~v~~~lG~~~ 245 (515)
T COG2812 222 DQAIAFG-------E---GEITLESVRDMLGLTD 245 (515)
T ss_pred HHHHHCC-------C---CCCCHHHHHHHHCCCC
T ss_conf 9999706-------7---7656999999968877
No 115
>KOG0744 consensus
Probab=98.78 E-value=4.2e-08 Score=80.19 Aligned_cols=164 Identities=28% Similarity=0.461 Sum_probs=100.2
Q ss_pred HHCHHHHHHHHHHHHHHHHHC--CCCC------CCEEEEECCCCCCHHHHHHHHHHHHCCCEE-EEECCCCCCHHHHCCC
Q ss_conf 201168999999999999842--4446------735998605656502799999977088249-9861888888883563
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRV--IKNK------GLILCFVGPPGVGKTSLAQSIAKATGRQYV-RMSLGGVYDEADIRGH 411 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~--~~~~------g~il~l~gppgvGKts~~~sia~al~r~f~-~islgg~~d~~~i~gh 411 (820)
.|+ ..+|+|.+-|.|---+. +.+. -.+++|.||||+|||||+|..|.-|-.... |-+-|- --||.-|
T Consensus 145 iyd-s~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~---liEinsh 220 (423)
T KOG0744 145 IYD-SNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ---LIEINSH 220 (423)
T ss_pred HHC-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCE---EEEEEHH
T ss_conf 641-328999999999998887617887446641489985799988227999998751465237644406---9997046
Q ss_pred CCC-CCCCCCHHHHHHHHH-----C-CCCCEEE-EEECHHHHHH-----HCCCCHH------HHHHHHCCCCCCCCEEEE
Q ss_conf 200-145671289999983-----2-7887399-9933155423-----1177115------566554060016813320
Q gi|254780270|r 412 RRT-YIGSMPGRIIQSLKR-----A-KRSNPLL-LLDEIDKMGS-----DLRGDPS------AALLEVLDPAQNSSFVDH 472 (820)
Q Consensus 412 ~~t-y~ga~pg~ii~~l~~-----~-~~~npv~-~ldeidk~~~-----~~~gdp~------~allevldp~qn~~f~d~ 472 (820)
+-- --=+--|+.|+.|-+ + .-.|-|| |+||+.-++. +.+..|+ +|||.-+|-= +.
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl--K~---- 294 (423)
T KOG0744 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL--KR---- 294 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--CC----
T ss_conf 788988712113899999999999717896899980787888999875413799821899999999989986--04----
Q ss_pred ECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHH-HHHHHHH
Q ss_conf 103523644279999348655-441311724799825878689-9989998
Q gi|254780270|r 473 YLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEE-KLQIAKN 521 (820)
Q Consensus 473 y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~e-k~~i~~~ 521 (820)
-++|+..||.|-.+ |+-++-||-.+...-||-..+ -.+|-+.
T Consensus 295 -------~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744 295 -------YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKS 338 (423)
T ss_pred -------CCCEEEEECCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHH
T ss_conf -------79779996262677778886117542110389639999999999
No 116
>KOG0728 consensus
Probab=98.78 E-value=7.6e-08 Score=78.22 Aligned_cols=139 Identities=32% Similarity=0.547 Sum_probs=96.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECH
Q ss_conf 467359986056565027999999770882499861888888883563200145671289999983278873-9999331
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEI 442 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldei 442 (820)
.+..-.+|+||||+|||-||+.+|.-..-.|.|+| .||+- ..|+|--.-+.-.-...|..--| +|++|||
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~c~firvs------gselv---qk~igegsrmvrelfvmarehapsiifmdei 249 (404)
T KOG0728 179 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS------GSELV---QKYIGEGSRMVRELFVMAREHAPSIIFMDEI 249 (404)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEEC------HHHHH---HHHHHHHHHHHHHHHHHHHHCCCCEEEEHHC
T ss_conf 88760488469997562999998754140799964------49999---9985013899999999987508826750000
Q ss_pred HHHHHHC----C-CCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCC-CHHHC-----CCEEEEEECC
Q ss_conf 5542311----7-711--55665540600168133201035236442799993486554-41311-----7247998258
Q gi|254780270|r 443 DKMGSDL----R-GDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNI-PLPLM-----DRMEIIRIAG 509 (820)
Q Consensus 443 dk~~~~~----~-gdp--~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i-~~~l~-----drme~i~~~~ 509 (820)
|-+|++- . ||- ...|||+|. |-+.|.-+ .++-.|...|-++| .++|+ ||- |++|+
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlelln--qldgfeat--------knikvimatnridild~allrpgridrk--iefp~ 317 (404)
T KOG0728 250 DSIGSSRVESGSGGDSEVQRTMLELLN--QLDGFEAT--------KNIKVIMATNRIDILDPALLRPGRIDRK--IEFPP 317 (404)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCCC--------CCEEEEEECCCCCCCCHHHCCCCCCCCC--CCCCC
T ss_conf 121234345789863899999999997--40240003--------6626998416422246866387754555--64899
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 78689998999860
Q gi|254780270|r 510 YTEEEKLQIAKNHL 523 (820)
Q Consensus 510 y~~~ek~~i~~~~l 523 (820)
-..+-...|.+-|-
T Consensus 318 p~e~ar~~ilkihs 331 (404)
T KOG0728 318 PNEEARLDILKIHS 331 (404)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 87788878998855
No 117
>KOG0730 consensus
Probab=98.78 E-value=9.7e-07 Score=69.86 Aligned_cols=171 Identities=24% Similarity=0.350 Sum_probs=102.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC--CEEEEEECH
Q ss_conf 673599860565650279999997708824998618888888835632001456712899999832788--739999331
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS--NPLLLLDEI 442 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~--npv~~ldei 442 (820)
-+.-++++||||+|||.+++.||+--+-.|..|+ ..++- +-|-|..--..-.+...|... --++++|||
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~------~peli---~k~~gEte~~LR~~f~~a~k~~~psii~IdEl 287 (693)
T KOG0730 217 PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLIN------GPELI---SKFPGETESNLRKAFAEALKFQVPSIIFIDEL 287 (693)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECC------CHHHH---HHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHH
T ss_conf 9987444389999818999999997372257406------28999---85246317789999999866599807758767
Q ss_pred HHHHHHCCC-C-----HHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHC----CCEEEEEECCCC
Q ss_conf 554231177-1-----15566554060016813320103523644279999348655-441311----724799825878
Q gi|254780270|r 443 DKMGSDLRG-D-----PSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLM----DRMEIIRIAGYT 511 (820)
Q Consensus 443 dk~~~~~~g-d-----p~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~----drme~i~~~~y~ 511 (820)
|-+....-+ + ..+.|+..+|--- --++|+-|++.|..+ |.+.|+ ||+-.|-+| +
T Consensus 288 d~l~p~r~~~~~~e~Rv~sqlltL~dg~~-------------~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP--~ 352 (693)
T KOG0730 288 DALCPKREGADDVESRVVSQLLTLLDGLK-------------PDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIP--G 352 (693)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCC-------------CCCCEEEEEECCCCCCCCHHHHCCCCCCEEEECCC--C
T ss_conf 62377643332488899999999985276-------------76746999715885556856524788531574489--8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 689998999860898998625781313228999999973---1774102347888799998987654211
Q gi|254780270|r 512 EEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR---LFTHEAGVRSFERALMKIARKAVTKIVK 578 (820)
Q Consensus 512 ~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~---~Yt~EaGvR~l~r~i~~i~r~~~~~~~~ 578 (820)
..++..|.+.+ .+.+++. ++..++.+-. .|+ | ..+..+||.++.....
T Consensus 353 ~~~RldIl~~l-----~k~~~~~------~~~~l~~iA~~thGyv---G-----aDL~~l~~ea~~~~~r 403 (693)
T KOG0730 353 SDGRLDILRVL-----TKKMNLL------SDVDLEDIAVSTHGYV---G-----ADLAALCREASLQATR 403 (693)
T ss_pred CHHHHHHHHHH-----HHHCCCC------CHHHHHHHHHHCCCHH---H-----HHHHHHHHHHHHHHHH
T ss_conf 33588999999-----8616887------2556899998734614---7-----8799999998777665
No 118
>PRK08903 hypothetical protein; Validated
Probab=98.77 E-value=6.6e-07 Score=71.13 Aligned_cols=178 Identities=14% Similarity=0.246 Sum_probs=118.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 44673599860565650279999997708---824998618888888835632001456712899999832788739999
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLL 439 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~l 439 (820)
...++.+.++||+|+|||.|..+++.... .....++.... + ..+... ....++++
T Consensus 39 ~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~-----------------~----~~~~~~-~~~d~l~i 96 (227)
T PRK08903 39 PVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASP-----------------L----LAFDFD-PRAELYAV 96 (227)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC-----------------H----HHHHHH-HCCCEEEE
T ss_conf 8878669998999998889999999999806997499651104-----------------5----777420-01898999
Q ss_pred ECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC----CCCHHHCCCE---EEEEECCCCH
Q ss_conf 33155423117711556655406001681332010352364427999934865----5441311724---7998258786
Q gi|254780270|r 440 DEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL----NIPLPLMDRM---EIIRIAGYTE 512 (820)
Q Consensus 440 deidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~----~i~~~l~drm---e~i~~~~y~~ 512 (820)
|.||.+. ++...+|.++++- =.+-.+...++|++.. ++.+-|+.|+ -++++..-..
T Consensus 97 DDi~~i~----~~~q~~lF~l~N~-------------~~~~~~~~ll~s~~~~p~~l~~~~DL~SRl~~gl~~~i~~pdd 159 (227)
T PRK08903 97 DDVERLD----DAQQIALFNLFNR-------------VRAHGKTALLVAGPAAPLALDVREDLRTRLGWGLVYEVKPLSD 159 (227)
T ss_pred ECCCCCC----CHHHHHHHHHHHH-------------HHHCCCCEEEECCCCCHHHCCCCHHHHHHHHCCCEEEEECCCH
T ss_conf 6411489----5699999999999-------------9972994899718997120120089999993897389979799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 89998999860898998625781313228999999973177410234788879999898765421178520127967867
Q gi|254780270|r 513 EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQ 592 (820)
Q Consensus 513 ~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~ 592 (820)
+++..|-+++ ..+ .++.++++++.||+++++|. +|.|+..+..+-+..... .-.||...++
T Consensus 160 e~~~~iL~~~-----a~~-----rgl~l~~~v~~yl~~r~~R~--~~~L~~~l~~Ld~~sl~~-------kr~iTi~lvk 220 (227)
T PRK08903 160 EDKIAALKAA-----AAE-----RGLQLADEVPDYLLTHFRRD--MPSLMALLDALDRYSLEQ-------KRAVTLPLLR 220 (227)
T ss_pred HHHHHHHHHH-----HHH-----CCCCCCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHC-------CCCCCHHHHH
T ss_conf 9999999999-----996-----29999889999999983478--999999999999999982-------9999999999
Q ss_pred HHHCCC
Q ss_conf 530520
Q gi|254780270|r 593 DYLGVP 598 (820)
Q Consensus 593 ~~lg~~ 598 (820)
+.|..+
T Consensus 221 evLa~~ 226 (227)
T PRK08903 221 EMLAAP 226 (227)
T ss_pred HHHCCC
T ss_conf 985599
No 119
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.76 E-value=1.7e-08 Score=83.24 Aligned_cols=91 Identities=33% Similarity=0.527 Sum_probs=78.7
Q ss_pred EEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECCCCEE
Q ss_conf 67566317825688714306429489999999999729-84999973686777888656025314899999799889809
Q gi|254780270|r 27 IYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSH-KKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTV 105 (820)
Q Consensus 27 ~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~d-~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klpDG~~ 105 (820)
++|++|+++.++|||+++++.|++++.++++++.+... .+++++..+|...+.
T Consensus 1 ~~~~lpi~~~~lfpg~~~~i~v~~~~~v~ai~e~~~~~qp~v~~~l~~d~~~~~-------------------------- 54 (92)
T smart00464 1 TLPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQDDPTET-------------------------- 54 (92)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--------------------------
T ss_conf 975212567766887557788388889999999998169825688853689998--------------------------
Q ss_pred EEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999754799998870798199999980488888478999999999999999985455777888764126886789999
Q gi|254780270|r 106 KILVEGSVRARIVEYIEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADV 185 (820)
Q Consensus 106 ~ILVeGl~RvkI~ei~~~~pyl~A~Ve~l~d~~~d~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~iddp~~LAD~ 185 (820)
++.++|+
T Consensus 55 -------------------------------------------------------------------------~~~~s~~ 61 (92)
T smart00464 55 -------------------------------------------------------------------------PEPLSDT 61 (92)
T ss_pred -------------------------------------------------------------------------CCCCCHH
T ss_conf -------------------------------------------------------------------------8644100
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8852358989999987432479999999999
Q gi|254780270|r 186 IAANLSIKVAERQKILEAVSVKERLEMLLVF 216 (820)
Q Consensus 186 IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~l 216 (820)
+++++++...+||++||+.++..|+++++.+
T Consensus 62 ~~~~~~~~~~~~q~lL~~~~~~~R~~~~i~~ 92 (92)
T smart00464 62 IAALMPLELHEKQELLELEGTNKRLEKVIKL 92 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 6676168898888999861601778887429
No 120
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.3e-07 Score=73.43 Aligned_cols=167 Identities=21% Similarity=0.263 Sum_probs=115.8
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------------CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHH
Q ss_conf 98424446735998605656502799999977088-------------24998618888888835632001456712899
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------------QYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------------~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii 424 (820)
..+..+.-....+|.||-||||||+|+-+|++||- .+..|.-|.--|--||.+-+||-|.-+
T Consensus 30 ~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d~~eidaas~~~v~~~----- 104 (696)
T PRK06872 30 NGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFIDLIEIDAASRTKVEDT----- 104 (696)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHH-----
T ss_conf 999719863047511789888889999999986789999999788862257674478775467505655788999-----
Q ss_pred HHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHH
Q ss_conf 999832------788739999331554231177115566554060016813320103523644279999348655-4413
Q gi|254780270|r 425 QSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLP 497 (820)
Q Consensus 425 ~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~ 497 (820)
..|... ...--|+++||+.-+|.+. .+|||..|. -|= ..|.||+---+.+ ||..
T Consensus 105 r~l~~~~~~~p~~~~~kvy~idevhmls~~~----fnallktle-------------epp--~~v~f~latt~~~k~p~t 165 (696)
T PRK06872 105 RELLDNVQYKPVVGRFKVYLIDEVHMLSRHS----FNALLKTLE-------------EPP--EYVKFLLATTDPQKLPIT 165 (696)
T ss_pred HHHHHHCCCCCCCCCEEEEEEEHHHHCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCHH
T ss_conf 9999845457767754799970054438999----999987502-------------797--544899843863227488
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 117247998258786899989998608989986257813132289999999731774102347
Q gi|254780270|r 498 LMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS 560 (820)
Q Consensus 498 l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~ 560 (820)
.+.|---..+..-+.++-.. .++.. +..+.+.|+++++..|-+. -...+|+
T Consensus 166 ilsrc~~f~~~~~~~~~i~~---------~l~~i-~~~e~~~~~~~al~~~a~~--a~gs~rd 216 (696)
T PRK06872 166 ILSRCMQFHLKALDQTQIAQ---------HLEFI-LTQENIPFESPALEKLAKA--AQGSIRD 216 (696)
T ss_pred HHHHHHHEECCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHH
T ss_conf 98766530026899999999---------99999-9984997799999999997--5895677
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=98.73 E-value=1e-06 Score=69.70 Aligned_cols=179 Identities=20% Similarity=0.350 Sum_probs=120.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 673599860565650279999997---70882499861888888883563200145671289999983278873999933
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~---al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
..+.+-+.||+|.|||.|..+++. ..+.+.+.+++....+.. | .+++.+... .++++|-
T Consensus 44 ~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~-------------~-~~~~~l~~~----d~l~IDD 105 (234)
T PRK05642 44 TESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG-------------P-ELLDNLEQY----ELVCIDD 105 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-------------H-HHHHHHHHC----CEEEEEC
T ss_conf 788389988999988999999999998079967997899987544-------------9-998624227----9898936
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCCE---EEEEECCCCHH
Q ss_conf 15542311771155665540600168133201035236442799993486----5544-1311724---79982587868
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDRM---EIIRIAGYTEE 513 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~drm---e~i~~~~y~~~ 513 (820)
||.++... +-.-+|.++..--+.. .+ -.+.|++. +++- +=|+.|+ .++++..-..+
T Consensus 106 i~~i~g~~--~~e~~lF~l~N~~~~~-------------~~-~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~l~d~ 169 (234)
T PRK05642 106 LDVIAGKA--DWEEALFHLFNRLRDS-------------GR-RLLLAASKSPRELPVKLPDLKSRLTLALVFQMRGLSDE 169 (234)
T ss_pred HHHHCCCH--HHHHHHHHHHHHHHHC-------------CC-EEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHH
T ss_conf 45546885--9999999999999983-------------99-59995787955523001679999957812751489989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHH
Q ss_conf 99989998608989986257813132289999999731774102347888799998987654211785201279678675
Q gi|254780270|r 514 EKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQD 593 (820)
Q Consensus 514 ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~ 593 (820)
+|+.|-+++. . ...+.++++++.||+++++|. +|.|...+.++-+..... +..||-..+++
T Consensus 170 ~~~~iL~~~a-----~-----~rgi~l~~~v~~yl~~r~~R~--~~~L~~~l~~Ld~~sl~~-------kr~iTiplvk~ 230 (234)
T PRK05642 170 DKLRALQLRA-----S-----RRGLHLTDEVGHFILTRGTRS--MSALFDLLERLDQASLQA-------QRKLTIPFLKE 230 (234)
T ss_pred HHHHHHHHHH-----H-----HCCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHH-------CCCCCHHHHHH
T ss_conf 9999999997-----7-----546899989999999973588--999999999999999983-------89999999999
Q ss_pred HHC
Q ss_conf 305
Q gi|254780270|r 594 YLG 596 (820)
Q Consensus 594 ~lg 596 (820)
.||
T Consensus 231 vLg 233 (234)
T PRK05642 231 TLG 233 (234)
T ss_pred HHC
T ss_conf 838
No 122
>KOG0727 consensus
Probab=98.73 E-value=3.5e-07 Score=73.25 Aligned_cols=216 Identities=24% Similarity=0.394 Sum_probs=129.8
Q ss_pred HHHHCHHHHHHHHHHHHHHH-------HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 65201168999999999999-------84244467359986056565027999999770882499861888888883563
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQ-------MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~-------~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
.|.-||+--|+-|-|-.-.- +..+--...-.+|+||||+|||-|+|.+|....-.|.|+- .||.-
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvv------gsefv-- 226 (408)
T KOG0727 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV------GSEFV-- 226 (408)
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEEC------CHHHH--
T ss_conf 3456621128999988836530788999708899862277579997578999998612611144630------18999--
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH-CC---C---CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 200145671289999983278873-9999331554231-17---7---11556655406001681332010352364427
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD-LR---G---DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~-~~---g---dp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
..|.|--|-+.-.-.+-|+.+-| +|++||||-+..- |- | .....|+|+|. |-..|-- - .+|
T Consensus 227 -qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~elln--qmdgfdq-~-------~nv 295 (408)
T KOG0727 227 -QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLN--QMDGFDQ-T-------TNV 295 (408)
T ss_pred -HHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--HCCCCCC-C-------CCE
T ss_conf -9985548389999999876169837986224567664124444631899999999997--5147676-6-------655
Q ss_pred EEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 9999348655-44131-----17247998258786899989998608989986257813132289999999731774102
Q gi|254780270|r 484 MFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAG 557 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaG 557 (820)
-.|...|-.+ +.++| +||- |++|----..|.-+ +--+..++.|.+ ++. ++.+|..-..-+|
T Consensus 296 kvimatnradtldpallrpgrldrk--iefplpdrrqkrlv-----f~titskm~ls~-~vd-----le~~v~rpdkis~ 362 (408)
T KOG0727 296 KVIMATNRADTLDPALLRPGRLDRK--IEFPLPDRRQKRLV-----FSTITSKMNLSD-EVD-----LEDLVARPDKISG 362 (408)
T ss_pred EEEEECCCCCCCCHHHCCCCCCCCC--CCCCCCCHHHHHHH-----HHHHHHCCCCCC-CCC-----HHHHHCCCCCCCH
T ss_conf 8998327555668766287643444--35779854665222-----775431026785-448-----8987418543434
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHH
Q ss_conf 347888799998987654211785201279678675
Q gi|254780270|r 558 VRSFERALMKIARKAVTKIVKNSDTTVSINENNLQD 593 (820)
Q Consensus 558 vR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~ 593 (820)
-.|++||..+...-+... .++|..+++++
T Consensus 363 -----adi~aicqeagm~avr~n--ryvvl~kd~e~ 391 (408)
T KOG0727 363 -----ADINAICQEAGMLAVREN--RYVVLQKDFEK 391 (408)
T ss_pred -----HHHHHHHHHHHHHHHHHC--CEEEEHHHHHH
T ss_conf -----669999999768998762--54652777999
No 123
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.5e-07 Score=76.04 Aligned_cols=154 Identities=18% Similarity=0.301 Sum_probs=96.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH--HC-CC---C
Q ss_conf 652011689999999999998424446735998605656502799999977088249986188888888--35-63---2
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD--IR-GH---R 412 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~--i~-gh---~ 412 (820)
.+.+|.+.+++.....+.- ..-..-++|.||+|||||++|..+|++|--....-..+...-... +. .| |
T Consensus 17 ~~liGqe~~~~~L~~a~~~-----grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r 91 (363)
T PRK07471 17 TALFGHAAAEAALLDAYRS-----GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVAR 91 (363)
T ss_pred CCCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHH
T ss_conf 7316819999999999985-----99764587679998188999999999985799977777678705312587772899
Q ss_pred CCCCCCCCHH------------------HHHHHHHC---------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CC
Q ss_conf 0014567128------------------99999832---------78873999933155423117711556655406-00
Q gi|254780270|r 413 RTYIGSMPGR------------------IIQSLKRA---------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PA 464 (820)
Q Consensus 413 ~ty~ga~pg~------------------ii~~l~~~---------~~~npv~~ldeidk~~~~~~gdp~~allevld-p~ 464 (820)
+.--|+-|+- -|...+.. .-.-=|+++|+.|+|+.+ -++|||-+|. |-
T Consensus 92 ~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~----aaNALLK~LEEPP 167 (363)
T PRK07471 92 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNAN----AANALLKVLEEPP 167 (363)
T ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHH----HHHHHHHHHCCCC
T ss_conf 995269998466762001133321244539999999999724852489669998687873889----9999999721589
Q ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 16813320103523644279999348655-441311724799825878689998
Q gi|254780270|r 465 QNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQ 517 (820)
Q Consensus 465 qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~ 517 (820)
.+++||...+..+ +++.++.|.-.+.+..-+.++-..
T Consensus 168 ----------------~~t~fiLit~~~~~llpTI~SRCq~~~~~~l~~~~~~~ 205 (363)
T PRK07471 168 ----------------ARSLLLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIA 205 (363)
T ss_pred ----------------CCEEEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf ----------------88389986399777779999735242589959999999
No 124
>KOG0739 consensus
Probab=98.73 E-value=1.6e-07 Score=75.84 Aligned_cols=154 Identities=25% Similarity=0.363 Sum_probs=91.6
Q ss_pred HHHCHHHHHHHHHHHHHHH----HHC-CCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCC
Q ss_conf 5201168999999999999----842-4446-735998605656502799999977088249986188888888356320
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQ----MRV-IKNK-GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRR 413 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~----~~~-~~~~-g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ 413 (820)
|.-|||.+||-+-|-.-.- ++. ++.+ -.-++|.||||+||.-|||.+|.--+--|+.+|-.-+ .|---|.+
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL--vSKWmGES- 210 (439)
T KOG0739 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--VSKWMGES- 210 (439)
T ss_pred HHCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH--HHHHHCCH-
T ss_conf 301405689998754350002535415887754257886799975779999987414770687301788--99873217-
Q ss_pred CCCCCCCHHHHHHHH-HCCCCCE-EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC
Q ss_conf 014567128999998-3278873-99993315542311771155665540600168133201035236442799993486
Q gi|254780270|r 414 TYIGSMPGRIIQSLK-RAKRSNP-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT 491 (820)
Q Consensus 414 ty~ga~pg~ii~~l~-~~~~~np-v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~ 491 (820)
-+.|..|- -|...-| +|++||||-+..+-.++-+-|---+ -..|-=+.-+|.-|-+.||....-|-
T Consensus 211 -------EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRI-----KTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739 211 -------EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRI-----KTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred -------HHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHH-----HHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf -------999999999987349947986344443268877711777777-----77888764066658886489723788
Q ss_pred C-CCCHHHCCCEE-EEEEC
Q ss_conf 5-54413117247-99825
Q gi|254780270|r 492 L-NIPLPLMDRME-IIRIA 508 (820)
Q Consensus 492 ~-~i~~~l~drme-~i~~~ 508 (820)
. ....+.+-|.| .|.+|
T Consensus 279 Pw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739 279 PWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred CHHHHHHHHHHHHCCEECC
T ss_conf 4367799998765023010
No 125
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.72 E-value=4.4e-07 Score=72.43 Aligned_cols=170 Identities=24% Similarity=0.381 Sum_probs=99.4
Q ss_pred HHHHHHHCHHHHHHHHHHHHH--HHHHCC---CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEE----CCCCCCH
Q ss_conf 776652011689999999999--998424---44673-5998605656502799999977088249986----1888888
Q gi|254780270|r 336 ILDQDHFGLEKVKERIIEYLA--VQMRVI---KNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYVRMS----LGGVYDE 405 (820)
Q Consensus 336 iLd~~hyGl~~vK~rile~la--v~~~~~---~~~g~-il~l~gppgvGKts~~~sia~al~r~f~~is----lgg~~d~ 405 (820)
.+--+.||++.||.-|+-.|. +.+..+ +.+|. -++|+|-||+||+.+-+.+++..-|-.+.-. -.|+.-
T Consensus 200 SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~iaprsvytsG~gsS~aGLTa- 278 (509)
T smart00350 200 SLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA- 278 (509)
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEE-
T ss_conf 5497323878899999999708876648988504154149984699823629999999858860687344455577068-
Q ss_pred HHHC---CCCCC-CCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC-
Q ss_conf 8835---63200-145671289999983278873999933155423117711556655406001681332010352364-
Q gi|254780270|r 406 ADIR---GHRRT-YIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL- 480 (820)
Q Consensus 406 ~~i~---gh~~t-y~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl- 480 (820)
|-.| +..++ =-||+ | -..+.|..+||.|||+...+ +||+|+.. |..-..-.= ++..-|
T Consensus 279 av~rd~~~ge~~leaGAL----V------lAD~GiccIDEfdKm~~~dr----~alhEaME--QQtisiaKa-Gi~~tL~ 341 (509)
T smart00350 279 AVTRDPETREFTLEGGAL----V------LADNGVCCIDEFDKMDDSDR----TAIHEAME--QQTISIAKA-GITTTLN 341 (509)
T ss_pred EEEECCCCCCEEECCCCE----E------CCCCCEEEEEEHHHCCHHHH----HHHHHHHH--HCEEEEECC-CEEEEEE
T ss_conf 999817888378725641----2------05675478521320787789----99999997--487787437-5179985
Q ss_pred CCEEEEEECCC--------------CCCCHHHCCCEEEEEEC--CCCHHHHHHHHHHHH
Q ss_conf 42799993486--------------55441311724799825--878689998999860
Q gi|254780270|r 481 SDVMFIMTANT--------------LNIPLPLMDRMEIIRIA--GYTEEEKLQIAKNHL 523 (820)
Q Consensus 481 s~v~fi~tan~--------------~~i~~~l~drme~i~~~--~y~~~ek~~i~~~~l 523 (820)
+++-.+|.||- +++|+||+.|...|-+= .-..+.-..||+.-+
T Consensus 342 aR~sVlAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil 400 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 57359986556556378889999946898035410238999615898788999999999
No 126
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.72 E-value=1.8e-06 Score=67.75 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=133.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------C-EEEEECCCCCCH----------HHH--CCC--CCCCCCCC-
Q ss_conf 446735998605656502799999977088-------2-499861888888----------883--563--20014567-
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGR-------Q-YVRMSLGGVYDE----------ADI--RGH--RRTYIGSM- 419 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r-------~-f~~islgg~~d~----------~~i--~gh--~~ty~ga~- 419 (820)
...++=+.++||+|||||+.++-+.+.|.+ . |..+.+---.+. ..+ +++ .--+-|-=
T Consensus 40 G~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~ 119 (383)
T TIGR02928 40 GSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQLNRRGSGEEVPTTGLST 119 (383)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 48987258878889878899999999999986226997158999778546846999999999851577888898877878
Q ss_pred ---CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHH-HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC--
Q ss_conf ---12899999832788739999331554231177115-566554060016813320103523644279999348655--
Q gi|254780270|r 420 ---PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPS-AALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-- 493 (820)
Q Consensus 420 ---pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~-~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-- 493 (820)
..++.+.|....-.-=||.|||||++=.+...||| |-+|=.|==.+++.- +|=++|=-|.=-|+++
T Consensus 120 ~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L~Ra~~~~~--------~~~~~vgvIgISND~~f~ 191 (383)
T TIGR02928 120 SEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQLSRARENGD--------LENAKVGVIGISNDLKFR 191 (383)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEEEECCCHHH
T ss_conf 999999999983201887999862310221588888078788534331000357--------788534899986571436
Q ss_pred --CCHHHCCC--EEEEEECCCCHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf --44131172--4799825878689998999860898998-625781313228999999973177410234788879999
Q gi|254780270|r 494 --IPLPLMDR--MEIIRIAGYTEEEKLQIAKNHLVKKVLT-EHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKI 568 (820)
Q Consensus 494 --i~~~l~dr--me~i~~~~y~~~ek~~i~~~~l~p~~~~-~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i 568 (820)
+.+=-+|. =|-|.+|+|..+|=..|-+ .+. +.+|.++ .++|++|.....-+.+|-| +..+-|. +
T Consensus 192 ~~Ld~RVkSsL~~eei~FpPYdA~eL~~IL~------~R~v~~AF~dG--vl~d~VI~lcAA~aAq~hG--DAR~AiD-L 260 (383)
T TIGR02928 192 ENLDPRVKSSLCEEEIVFPPYDAEELRDILE------NRAVEKAFYDG--VLDDGVIPLCAALAAQEHG--DARKAID-L 260 (383)
T ss_pred HHCCCCEECCCCCCCCEECCCCHHHHHHHHH------HHHHHHCCCCC--CCCHHHHHHHHHHHHCCCC--CHHHHHH-H
T ss_conf 4457530132487400407988699999997------20312033688--5462279999998620678--7899999-9
Q ss_pred HHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 898765421178520127967867530
Q gi|254780270|r 569 ARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 569 ~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
.| .|-++++.... -.||.+++++.-
T Consensus 261 LR-~AGe~A~~~g~-~~Vt~~HV~~A~ 285 (383)
T TIGR02928 261 LR-VAGEIAEREGA-ERVTEDHVEEAQ 285 (383)
T ss_pred HH-HHHHHHHHCCC-CCCHHHHHHHHH
T ss_conf 99-87687531576-310088899999
No 127
>KOG0478 consensus
Probab=98.71 E-value=2.2e-07 Score=74.69 Aligned_cols=244 Identities=20% Similarity=0.262 Sum_probs=133.0
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHCCCC-----CCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
Q ss_conf 7665201168999999999999842444-----6735-998605656502799999977088249986188888888356
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMRVIKN-----KGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~~~~~-----~g~i-l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~g 410 (820)
+--..||||+||.-+|=-|-=+.-+... +|.| |+|||-||+||+.|-+++++.+-|--+.=--|+-.- . +
T Consensus 427 iAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSav-G-L-- 502 (804)
T KOG0478 427 IAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAV-G-L-- 502 (804)
T ss_pred HCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCHH-C-C--
T ss_conf 06565344226666778875687632233444245522899469986789999999974775404058763022-0-0--
Q ss_pred CCCCCCCC--CCHHHHH-HHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCEEEE
Q ss_conf 32001456--7128999-9983278873999933155423117711556655406001681332010-352364427999
Q gi|254780270|r 411 HRRTYIGS--MPGRIIQ-SLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL-EVEYDLSDVMFI 486 (820)
Q Consensus 411 h~~ty~ga--~pg~ii~-~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~-~~~~dls~v~fi 486 (820)
-+||-- --++.|+ +=.-+=.-|.+--+||.|||+.+.| |.|+||+.-+.=+-=.---+ -++ -+.=.+
T Consensus 503 --TayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStr----SvLhEvMEQQTvSIAKAGII~sLN---AR~SVL 573 (804)
T KOG0478 503 --TAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTR----SVLHEVMEQQTLSIAKAGIIASLN---ARCSVL 573 (804)
T ss_pred --EEEEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCEEEECC---CCCEEE
T ss_conf --35677657655466504848972896577112333327788----999999987631174302234216---653034
Q ss_pred EECC--------------CCCCCHHHCCCEEEEEECCCCHHHH--H----HHHHHHH--------------HHHHHHHHC
Q ss_conf 9348--------------6554413117247998258786899--9----8999860--------------898998625
Q gi|254780270|r 487 MTAN--------------TLNIPLPLMDRMEIIRIAGYTEEEK--L----QIAKNHL--------------VKKVLTEHA 532 (820)
Q Consensus 487 ~tan--------------~~~i~~~l~drme~i~~~~y~~~ek--~----~i~~~~l--------------~p~~~~~~~ 532 (820)
|.|| .+++|++|+.|+..|.+===-.+|. . +|..-|. +-+..-.+.
T Consensus 574 AaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yA 653 (804)
T KOG0478 574 AAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYA 653 (804)
T ss_pred EEECCCCCCCCCCCCHHHCCCCCHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 45354324579997623216788056432337899842753267789999999841455521025778689999999997
Q ss_pred CCCCCCCCCHHHHHHHHHCCC--C----CCH-HHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 781313228999999973177--4----102-34788879999898765421178520127967867530
Q gi|254780270|r 533 LKQEECCISDGVLLDIIRLFT--H----EAG-VRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 533 ~~~~~~~~~~~~i~~ii~~Yt--~----EaG-vR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
.+...-.+++++...++..|- | ++| .-.--|+++.+.|-....-- ....-.+...++++.+
T Consensus 654 rk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak--~r~s~~ve~~dV~eA~ 721 (804)
T KOG0478 654 RKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAK--MRLSNRVEEIDVEEAV 721 (804)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHH
T ss_conf 4257865568999999998665665313456530148889999999998887--6402555445599999
No 128
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.71 E-value=1.7e-07 Score=75.62 Aligned_cols=160 Identities=28% Similarity=0.475 Sum_probs=111.9
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
Q ss_conf 520116899999999999984244-------4673599860565650279999997708824998618888888835632
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~ 412 (820)
|.-||++..++|-|++-.-...|. -.+.-++|+||||+|||-|||++|+-.+-.|..|. | -||-.
T Consensus 207 diG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~in--G----Peims-- 278 (980)
T TIGR01243 207 DIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAIN--G----PEIMS-- 278 (980)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEC--C----CHHHH--
T ss_conf 203358999999998843575647898618899873587558986178999998753055178850--6----03443--
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH---CCCCH----HHHHHHHCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 00145671289999983278873-9999331554231---17711----5566554060016813320103523644279
Q gi|254780270|r 413 RTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD---LRGDP----SAALLEVLDPAQNSSFVDHYLEVEYDLSDVM 484 (820)
Q Consensus 413 ~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~---~~gdp----~~allevldp~qn~~f~d~y~~~~~dls~v~ 484 (820)
-|.|..--++-+..+.|..+.| +|++||||-+..- ..|.. .+-||.+.|--... .+|+
T Consensus 279 -ky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~r-------------G~v~ 344 (980)
T TIGR01243 279 -KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR-------------GKVI 344 (980)
T ss_pred -HHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-------------CEEE
T ss_conf -31363078999999865305870787412110076410000168899999999997400248-------------7289
Q ss_pred EEEECCCCC-CCHHH-----CCCEEEEEECCCC-HHHHHHHHHH
Q ss_conf 999348655-44131-----1724799825878-6899989998
Q gi|254780270|r 485 FIMTANTLN-IPLPL-----MDRMEIIRIAGYT-EEEKLQIAKN 521 (820)
Q Consensus 485 fi~tan~~~-i~~~l-----~drme~i~~~~y~-~~ek~~i~~~ 521 (820)
.|-..|-.+ +.++| .||-=.|..|.-. -.|-++|-.+
T Consensus 345 viGatnrP~a~dPalrrPGrfdrei~~~~Pd~~~r~eil~~htr 388 (980)
T TIGR01243 345 VIGATNRPDALDPALRRPGRFDREIEIGVPDKEGRKEILQIHTR 388 (980)
T ss_pred EEECCCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 98146885002622427886443357418854567888876414
No 129
>KOG0735 consensus
Probab=98.71 E-value=3.7e-07 Score=73.01 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=119.2
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC----EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE-
Q ss_conf 244467359986056565027999999770882----499861888888883563200145671289999983278873-
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ----YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP- 435 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~----f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np- 435 (820)
.+-...+-|.|.||+|.|||.|+++|++-.-.+ +.++| -+.++|.+-- ..---+......|--+-|
T Consensus 426 spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~------Cs~l~~~~~e---~iQk~l~~vfse~~~~~PS 496 (952)
T KOG0735 426 SPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS------CSTLDGSSLE---KIQKFLNNVFSEALWYAPS 496 (952)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEE------CHHCCCHHHH---HHHHHHHHHHHHHHHHCCC
T ss_conf 543346618986799877769999999875156506999975------2210420489---9999999999998863780
Q ss_pred EEEEECHHHHHH--HCCCCH---HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCC---EEEEE
Q ss_conf 999933155423--117711---5566554060016813320103523644279999348655-44131172---47998
Q gi|254780270|r 436 LLLLDEIDKMGS--DLRGDP---SAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDR---MEIIR 506 (820)
Q Consensus 436 v~~ldeidk~~~--~~~gdp---~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~dr---me~i~ 506 (820)
||+||.+|-+.+ +..+.+ ++-+| ++...|+-...--+=+++-||+|-++++ |++-|-+- -+++.
T Consensus 497 iIvLDdld~l~~~s~~e~~q~~~~~~rl-------a~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735 497 IIVLDDLDCLASASSNENGQDGVVSERL-------AAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred EEEECCHHHHHCCCCCCCCCCHHHHHHH-------HHHHHHHHHHHHCCCCEEEEEEECHHHHHCCHHHCCCCCEEEEEE
T ss_conf 8997050354056844477302899999-------999999999987068579999851434203853347631478881
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 25878689998999860898998625781313228999999---973177410234788879999898765421178520
Q gi|254780270|r 507 IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLD---IIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTT 583 (820)
Q Consensus 507 ~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~---ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~ 583 (820)
++.-...+.-+|-+...-.++ ..++.+-+.. --+.|- .++|+-....++-.+-++..-+. +
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~----------~~~~~~dLd~ls~~TEGy~----~~DL~ifVeRai~~a~leris~~--~ 633 (952)
T KOG0735 570 LPAPAVTRRKEILTTIFSKNL----------SDITMDDLDFLSVKTEGYL----ATDLVIFVERAIHEAFLERISNG--P 633 (952)
T ss_pred CCCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHCCC--C
T ss_conf 589235679999999997553----------4545678998887607844----04479999999999998875167--6
Q ss_pred ECCCHHHHHHHHCCCCCCC---CCHHCCCCCCCCCEEEECCCCCE
Q ss_conf 1279678675305200033---20002233650000000001680
Q gi|254780270|r 584 VSINENNLQDYLGVPRYKY---GKIEGEDQVGIVTGLAWTEVGGE 625 (820)
Q Consensus 584 ~~i~~~~l~~~lg~~~~~~---~~~~~~~~~G~v~GLa~t~~GG~ 625 (820)
..+|.+++.+-|. .|.. ..+.. -.-+||.|--.||.
T Consensus 634 klltke~f~ksL~--~F~P~aLR~ik~----~k~tgi~w~digg~ 672 (952)
T KOG0735 634 KLLTKELFEKSLK--DFVPLALRGIKL----VKSTGIRWEDIGGL 672 (952)
T ss_pred CCCHHHHHHHHHH--HCCHHHHHHCCC----CCCCCCCCEECCCH
T ss_conf 3101889999987--407677640301----56678771003358
No 130
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=6.6e-07 Score=71.10 Aligned_cols=167 Identities=19% Similarity=0.244 Sum_probs=113.3
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----C-------------EEEEECCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 8424446735998605656502799999977088-----2-------------499861888888883563200145671
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-----Q-------------YVRMSLGGVYDEADIRGHRRTYIGSMP 420 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-----~-------------f~~islgg~~d~~~i~gh~~ty~ga~p 420 (820)
.+..+.-....+|.||-||||||+|+-+|++||- + +..|.-|.--|.-||.+-++|-|.-+
T Consensus 31 a~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~EiDaas~~~v~~~- 109 (721)
T PRK12323 31 ALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEM- 109 (721)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHH-
T ss_conf 9971997544750279988898999999999768998667898788787765468775689876477436767888999-
Q ss_pred HHHHHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-
Q ss_conf 2899999832------788739999331554231177115566554060016813320103523644279999348655-
Q gi|254780270|r 421 GRIIQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN- 493 (820)
Q Consensus 421 g~ii~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~- 493 (820)
..|... ...--|+++||+.-+|..- .+|||..|. -|= ..|.||+---+.+
T Consensus 110 ----r~l~~~~~y~P~~~~~KvyiiDevhmls~~a----fnalLKtlE-------------ePP--~hv~FilaTT~~~K 166 (721)
T PRK12323 110 ----AQLLDQAVYAPTAGRFKVYMIDEVHMLTNHA----FNAMLKTLE-------------EPP--PHVKFILATTDPQK 166 (721)
T ss_pred ----HHHHHHCCCCCCCCCEEEEEEECCCCCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHH
T ss_conf ----9999854558876644699985400058999----999998401-------------797--55389994386344
Q ss_pred CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 44131172479982587868999899986089899862578131322899999997317741023478
Q gi|254780270|r 494 IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSF 561 (820)
Q Consensus 494 i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l 561 (820)
||...+.|---..+..-+.++-.. .++.. ++.+.+.++++++..|.+. -+.++|+-
T Consensus 167 ip~TilSRc~~f~~~~~~~~~i~~---------~l~~i-~~~E~i~~~~~al~~ia~~--a~Gs~RDa 222 (721)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVS---------HLDAI-LGQEGIGHEGNALRLLAQA--AHGSMRDA 222 (721)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHH
T ss_conf 858898776542347899999999---------99999-9983997799999999997--58964768
No 131
>KOG0736 consensus
Probab=98.68 E-value=5.6e-07 Score=71.69 Aligned_cols=222 Identities=23% Similarity=0.380 Sum_probs=125.2
Q ss_pred HHHHCHHHHHHHHHHHHHHH-----HHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
Q ss_conf 65201168999999999999-----842444-673599860565650279999997708824998618888888835632
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQ-----MRVIKN-KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~-----~~~~~~-~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~ 412 (820)
.|.=||++||.-|++-+-.- -+.... |-+-+.|+||||+|||-+||.+|.-....| +|+-| ..-|.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F--lSVKG---PELLN--- 743 (953)
T KOG0736 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF--LSVKG---PELLN--- 743 (953)
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCEEEE--EEECC---HHHHH---
T ss_conf 01557899999999875475437566512543135058877999855799999875430367--85058---89988---
Q ss_pred CCCCCCCCHHHHHHHHHCCCCC-EEEEEECHHHHHH--HCCCCH-------HHHHHHHCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 0014567128999998327887-3999933155423--117711-------55665540600168133201035236442
Q gi|254780270|r 413 RTYIGSMPGRIIQSLKRAKRSN-PLLLLDEIDKMGS--DLRGDP-------SAALLEVLDPAQNSSFVDHYLEVEYDLSD 482 (820)
Q Consensus 413 ~ty~ga~pg~ii~~l~~~~~~n-pv~~ldeidk~~~--~~~gdp-------~~allevldp~qn~~f~d~y~~~~~dls~ 482 (820)
-|||-----.=.-.-+|...- |||+|||||-+.. +..||- .|-||-=||-=-+.+ .-.
T Consensus 744 -MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~-----------s~~ 811 (953)
T KOG0736 744 -MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS-----------SQD 811 (953)
T ss_pred -HHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-----------CCC
T ss_conf -77430188899999985446974998312123275678878865408999999999862666788-----------886
Q ss_pred EEEEEECCCCC-CCHHHC--CCEEE-EEEC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 79999348655-441311--72479-9825-8786899989998608989986257813132289999999731774102
Q gi|254780270|r 483 VMFIMTANTLN-IPLPLM--DRMEI-IRIA-GYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAG 557 (820)
Q Consensus 483 v~fi~tan~~~-i~~~l~--drme~-i~~~-~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaG 557 (820)
||.|.--|--| ++++|+ -|..- +.+- +-+.+.|..|-+- +-.+..|.+ .|.+- ++.+..=.+|| |
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~A-----lTrkFkLde-dVdL~-eiAk~cp~~~T---G 881 (953)
T KOG0736 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEA-----LTRKFKLDE-DVDLV-EIAKKCPPNMT---G 881 (953)
T ss_pred EEEEECCCCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHH-----HHHHCCCCC-CCCHH-HHHHHCCCCCC---H
T ss_conf 59982588855457655388765524885588567889999999-----887702878-76799-99963896775---2
Q ss_pred HHHHHHHHHHHHHHHHHH--------HH-------CCCCCEECCCHHHHHHHH
Q ss_conf 347888799998987654--------21-------178520127967867530
Q gi|254780270|r 558 VRSFERALMKIARKAVTK--------IV-------KNSDTTVSINENNLQDYL 595 (820)
Q Consensus 558 vR~l~r~i~~i~r~~~~~--------~~-------~~~~~~~~i~~~~l~~~l 595 (820)
- .+++||..+-+. +- +.....+.|+.++.-+-.
T Consensus 882 A-----DlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~ 929 (953)
T KOG0736 882 A-----DLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSA 929 (953)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHH
T ss_conf 4-----79999889999999999777650553300148851788789999999
No 132
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.67 E-value=5.2e-07 Score=71.93 Aligned_cols=227 Identities=19% Similarity=0.299 Sum_probs=141.1
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------------------------
Q ss_conf 2011689999999999998424446735998605656502799999977088----------------------------
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---------------------------- 392 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---------------------------- 392 (820)
.-|.+..|.-++ ....++...|-.|. |+.|+|||+++++||.-|--
T Consensus 19 ivGqd~lk~aL~----l~av~P~iggvLI~--G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 19 IVGQDPLKLALG----LNAVDPQIGGALIA--GEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred HCCCHHHHHHHH----HHHCCCCCCEEEEE--CCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 437537778876----53026310426876--688752779999999867963321688788998870555199986202
Q ss_pred ------------CEEEEECCCCCC--------HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCC
Q ss_conf ------------249986188888--------888356320014567128999998327887399993315542311771
Q gi|254780270|r 393 ------------QYVRMSLGGVYD--------EADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGD 452 (820)
Q Consensus 393 ------------~f~~islgg~~d--------~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gd 452 (820)
+|+-..+|-+.| +.-++++.+++ .||.+-+| +..|+++||+--+....
T Consensus 93 e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af---~PGlLa~A------nRGIlYvDEvnlL~d~l--- 160 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAF---QPGLLARA------NRGILYVDEVNLLDDHL--- 160 (423)
T ss_pred CCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCC---CCCCHHHC------CCCEEEEECCCCCCHHH---
T ss_conf 3244542210031223887630433004567999972683002---77511003------58879872334351899---
Q ss_pred HHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCEEEEEECCCC--CCCHHHCCC-EEEEEECCC-CHHHHHHHHHHHHH---
Q ss_conf 1556655406001681332010-352364427999934865--544131172-479982587-86899989998608---
Q gi|254780270|r 453 PSAALLEVLDPAQNSSFVDHYL-EVEYDLSDVMFIMTANTL--NIPLPLMDR-MEIIRIAGY-TEEEKLQIAKNHLV--- 524 (820)
Q Consensus 453 p~~allevldp~qn~~f~d~y~-~~~~dls~v~fi~tan~~--~i~~~l~dr-me~i~~~~y-~~~ek~~i~~~~l~--- 524 (820)
..+||.++----|.-=++-|- -.| +++++|+|+|-. ++-++|+|| +..|.+.+- ..++.++|.++-+-
T Consensus 161 -vd~LLd~aaeG~n~vereGisi~hp---a~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~ 236 (423)
T COG1239 161 -VDALLDVAAEGVNDVEREGISIRHP---ARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEA 236 (423)
T ss_pred -HHHHHHHHHHCCCEEEECCEEECCC---CCEEEEEECCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf -9999999971774033575031367---617999644854466324667541115623478878888999999887500
Q ss_pred -H----------------HHHH-HHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf -9----------------8998-625781313228999999973177410234788879999898765421178520127
Q gi|254780270|r 525 -K----------------KVLT-EHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSI 586 (820)
Q Consensus 525 -p----------------~~~~-~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i 586 (820)
| +++. ..++ .++.+++++..+|. .-+++++|+...-.+. +.| ++.-++.- .....+
T Consensus 237 ~Pe~f~~~~~~~~~~lR~~ii~ar~~l--~~V~l~~~~~~~ia-~~~~~~~v~g~radi~-~~r-~a~a~aa~-~Gr~~v 310 (423)
T COG1239 237 VPEAFLEKYADAQRALRARIIAARSLL--SEVELDDDAETKIA-ELCARLAVDGHRADIV-VVR-AAKALAAL-RGRTEV 310 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHH-HHHHHHCCCCCCHHHH-HHH-HHHHHHHH-CCCEEE
T ss_conf 829999999999999999999998446--66467677999999-9999856578742567-899-99999875-396045
Q ss_pred CHHHHHHHH
Q ss_conf 967867530
Q gi|254780270|r 587 NENNLQDYL 595 (820)
Q Consensus 587 ~~~~l~~~l 595 (820)
+.+++.+.+
T Consensus 311 ~~~Di~~a~ 319 (423)
T COG1239 311 EEEDIREAA 319 (423)
T ss_pred EHHHHHHHH
T ss_conf 201377777
No 133
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.67 E-value=3e-06 Score=66.17 Aligned_cols=186 Identities=16% Similarity=0.270 Sum_probs=120.2
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 9998424446735998605656502799999977---0882499861888888883563200145671289999983278
Q gi|254780270|r 356 AVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA---TGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432 (820)
Q Consensus 356 av~~~~~~~~g~il~l~gppgvGKts~~~sia~a---l~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~ 432 (820)
|+.....+..+..+.++||+|+|||.|..+++.. .++....+++.-.. ...-.+.+++..
T Consensus 35 al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~--------------~~~~~~l~~l~~--- 97 (235)
T PRK08084 35 ALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRA--------------WFVPEVLEGMEQ--- 97 (235)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHH--------------HHHHHHHHHHHH---
T ss_conf 999998578987699989999888999999999997079857998779866--------------517999987641---
Q ss_pred CCEEEEEECHHHHHHHCCCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--CCC---HHHCCCE---
Q ss_conf 873999933155423117711--556655406001681332010352364427999934865--544---1311724---
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--NIP---LPLMDRM--- 502 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp--~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~i~---~~l~drm--- 502 (820)
-.++++|.||.++ |++ .-||.++++- -.+-.+.-.+.|++.. +++ +=|+.|+
T Consensus 98 -~dll~iDDi~~i~----g~~~~ee~lF~l~N~-------------~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~g 159 (235)
T PRK08084 98 -LSLVCIDNIECIA----GDELWEMAIFDLYNR-------------ILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 159 (235)
T ss_pred -CCEEEEECHHHHC----CCHHHHHHHHHHHHH-------------HHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf -8989982745546----997899999999999-------------9984896699967988243023128899999569
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79982587868999899986089899862578131322899999997317741023478887999989876542117852
Q gi|254780270|r 503 EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDT 582 (820)
Q Consensus 503 e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~ 582 (820)
-+.++.....++|+.|.+++ .... .+.++++++.||++++.|. +|.|+..+..+-+..-. .
T Consensus 160 ~~~~i~~~dde~~~~iL~~~-----a~~r-----gl~l~~~V~~yl~~~~~R~--~~~L~~~l~~Ld~~Sl~-------~ 220 (235)
T PRK08084 160 QIYKLQPLSDEEKLQALQLR-----ARLR-----GFELPEDVGRFLLKRLDRE--MRTLFMTLDQLDKASIT-------A 220 (235)
T ss_pred CEEEECCCCHHHHHHHHHHH-----HHHC-----CCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH-------C
T ss_conf 72785599989999999999-----9973-----9999989999999861588--99999999999999998-------1
Q ss_pred EECCCHHHHHHHH
Q ss_conf 0127967867530
Q gi|254780270|r 583 TVSINENNLQDYL 595 (820)
Q Consensus 583 ~~~i~~~~l~~~l 595 (820)
.-.||-..+++.|
T Consensus 221 kr~iTip~vkevL 233 (235)
T PRK08084 221 QRKLTIPFVKEIL 233 (235)
T ss_pred CCCCCHHHHHHHH
T ss_conf 9999999999996
No 134
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.67 E-value=1.6e-06 Score=68.13 Aligned_cols=55 Identities=31% Similarity=0.640 Sum_probs=46.0
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 7665201168999999999999842444673599860565650279999997708
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
-+.+-|||+++=++|.+|+---......+-.||.|+||||-||+|++..+-+.|-
T Consensus 49 F~d~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE 103 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1013116489999999999999844671256999988998877999999999999
No 135
>PHA02244 ATPase-like protein
Probab=98.66 E-value=2.9e-07 Score=73.86 Aligned_cols=178 Identities=26% Similarity=0.357 Sum_probs=106.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHH
Q ss_conf 99860565650279999997708824998618888888835632001456712899999832788739999331554231
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSD 448 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~ 448 (820)
..|+||.|+||||+|++||+||..+|+. .|-+.+|-++.| |+.|----.-..+++|=..-.||||||||--
T Consensus 122 V~L~G~AGsGKt~~A~qIA~aLdl~FYf--~gAI~~ef~L~G----f~DAnG~yh~T~f~kaFk~GGLfLlDEiDAS--- 192 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYF--MNAIMDEFELKG----FIDANGKFHETPFYEAFKKGGLFFIDEIDAS--- 192 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEE--CHHHHHHHHCCC----EECCCCCEECCHHHHHHHCCCEEEEEHHCCC---
T ss_conf 6997588886348999999985888244--132301343012----5648996726389999861887997320044---
Q ss_pred CCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC----CCEEEEEECCCC-----------C-CCHHHCCCEEEEEECCCCH
Q ss_conf 17711556655406001681332010352364----427999934865-----------5-4413117247998258786
Q gi|254780270|r 449 LRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL----SDVMFIMTANTL-----------N-IPLPLMDRMEIIRIAGYTE 512 (820)
Q Consensus 449 ~~gdp~~allevldp~qn~~f~d~y~~~~~dl----s~v~fi~tan~~-----------~-i~~~l~drme~i~~~~y~~ 512 (820)
+| +||+.+ |...-..|+++|.-. -+..-|+++|+. + +..+-+||.-.|+++ |
T Consensus 193 ---nP-~aL~~l-----NaALAN~fm~FPdG~V~~HedFr~IAagNT~G~Gad~~YVGRnqLD~ATLDRFv~ie~~-Y-- 260 (383)
T PHA02244 193 ---IP-EALIII-----NSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFD-Y-- 260 (383)
T ss_pred ---CH-HHHHHH-----HHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHEEECCCC-C--
T ss_conf ---87-999999-----89986476347642110057638997246567788722114454564646203644568-3--
Q ss_pred HHHHH--HHH--H---HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89998--999--8---60898998625781313228999999973177410234788879999898
Q gi|254780270|r 513 EEKLQ--IAK--N---HLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARK 571 (820)
Q Consensus 513 ~ek~~--i~~--~---~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~ 571 (820)
+||++ |.. + |.+...+.++.-+...-.|+--| |.+|..=-||-.-+=.+..|.-|
T Consensus 261 DEkiE~~~s~g~~dlv~fv~~~r~~~~~~~l~~v~s~ra----i~~~~k~d~v~~~~f~ie~iifk 322 (383)
T PHA02244 261 DEKIEHLISNGDEDLVNFVALLRHEMAEKGLDHVFSMRA----IIHGKKFDGVFEADFLIENIIFK 322 (383)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHH----HHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 167888850685899999999999877408870454154----53343124424213777767750
No 136
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.66 E-value=5.3e-07 Score=71.86 Aligned_cols=189 Identities=32% Similarity=0.467 Sum_probs=118.4
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCEEEEECCCCCC------HHH-----------HCCCCCCC-----
Q ss_conf 42444673599860565650279999997708--8249986188888------888-----------35632001-----
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATG--RQYVRMSLGGVYD------EAD-----------IRGHRRTY----- 415 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~--r~f~~islgg~~d------~~~-----------i~gh~~ty----- 415 (820)
..++..|.-++++||||+|||-||-.||+.|| -||+.||=+-+-. |+- ||-.|..|
T Consensus 59 k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvrikE~reV~EGeV~ 138 (450)
T COG1224 59 KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGEVV 138 (450)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEE
T ss_conf 71766661799978999768899999999858999821501332233100088999999998645486466688877899
Q ss_pred --------------------------------CCCCCHHHHHHHHHCCCCCE-EEEEEC----HHHHHHHCCCCHHHHHH
Q ss_conf --------------------------------45671289999983278873-999933----15542311771155665
Q gi|254780270|r 416 --------------------------------IGSMPGRIIQSLKRAKRSNP-LLLLDE----IDKMGSDLRGDPSAALL 458 (820)
Q Consensus 416 --------------------------------~ga~pg~ii~~l~~~~~~np-v~~lde----idk~~~~~~gdp~~all 458 (820)
.=..+..|.+.|.+.|+.+. ||++|. +-|+|.+...--....|
T Consensus 139 ~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl 218 (450)
T COG1224 139 ELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSKARAREDFDL 218 (450)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCC
T ss_conf 99876235799876655453289999636645762598999999983744587899982566799942242335422334
Q ss_pred H-------------------------HCCCC---C----------------------C-----------------CCEEE
Q ss_conf 5-------------------------40600---1----------------------6-----------------81332
Q gi|254780270|r 459 E-------------------------VLDPA---Q----------------------N-----------------SSFVD 471 (820)
Q Consensus 459 e-------------------------vldp~---q----------------------n-----------------~~f~d 471 (820)
+ =||-. + | --|.|
T Consensus 219 ~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFID 298 (450)
T COG1224 219 EDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFID 298 (450)
T ss_pred CCEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 42179877988525667789998700313432041113756527766578899999999999998549578613428973
Q ss_pred --EECC----------CCCCCCCEEEEEEC---------CC--CC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf --0103----------52364427999934---------86--55-4413117247998258786899989998608989
Q gi|254780270|r 472 --HYLE----------VEYDLSDVMFIMTA---------NT--LN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKV 527 (820)
Q Consensus 472 --~y~~----------~~~dls~v~fi~ta---------n~--~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~ 527 (820)
|-|| +.-||+-++..+|- |. .. ||.-|+|||=+|..-+|+.+|-.+|.+.-
T Consensus 299 EvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~iR----- 373 (450)
T COG1224 299 EVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIR----- 373 (450)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHHH-----
T ss_conf 213455789999998763146757999717750012166776888898766622567744779889999999976-----
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 98625781313228999999973177410234
Q gi|254780270|r 528 LTEHALKQEECCISDGVLLDIIRLFTHEAGVR 559 (820)
Q Consensus 528 ~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR 559 (820)
.+++++.++++|++++..-- -|...|
T Consensus 374 -----a~ee~i~l~~~Ale~L~~ig-~etSLR 399 (450)
T COG1224 374 -----AKEEDIELSDDALEYLTDIG-EETSLR 399 (450)
T ss_pred -----HHHHCCCCCHHHHHHHHHHC-HHHHHH
T ss_conf -----43540304888999997515-034489
No 137
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=98.65 E-value=3e-07 Score=73.75 Aligned_cols=153 Identities=26% Similarity=0.401 Sum_probs=126.9
Q ss_pred CCC--CEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHH
Q ss_conf 016--807999999974899724432568999999999999999988862998557420781474488884788873068
Q gi|254780270|r 621 EVG--GEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGI 698 (820)
Q Consensus 621 ~~G--G~~l~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi 698 (820)
+.| |..+.||+-...|...+.+-|.-+...||| -.=|||-...=+ =.|-..-|-|+.-=-..||.||+==.
T Consensus 6 ~lG~~a~~v~vEvdis~G~pg~~~VGLp~~~vkEs----reRVksAl~Ns~---F~fP~~rI~iNLAPAdl~KeG~~FDL 78 (505)
T TIGR00368 6 SLGVEAPLVTVEVDISKGLPGITIVGLPETTVKES----RERVKSALKNSG---FKFPAKRITINLAPADLPKEGGRFDL 78 (505)
T ss_pred HHCCCCCEEEEEEEECCCCCCCEEECCCCCCHHHH----HHHHHHHHHHCC---CCCCCCEEEEECCCCCCCCCCCCCCH
T ss_conf 10636403479887307787213433886310566----789999986157---66885401665388887667888633
Q ss_pred HHHHHHHHHHHCCC--CCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEEC
Q ss_conf 99999999983688--8756106636850302500065689999999709969980367755077614887709799981
Q gi|254780270|r 699 AMATAIVSIMTCIP--VYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPV 776 (820)
Q Consensus 699 ~i~tal~S~~~~~~--v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v 776 (820)
.|+.+|+-+=...- --.++-+-||+.|+|..-.|-|+=--+..|+..|++-+|+|++|..+.. +-+|..++.+
T Consensus 79 pIAI~ilaaseq~da~~L~~yl~lGEL~LdG~lR~i~gvlP~~~~A~k~~~~~~iVp~~N~~EaS-----lv~G~~~y~~ 153 (505)
T TIGR00368 79 PIAIGILAASEQLDAKKLDEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKFIIVPKENAEEAS-----LVDGLNVYGA 153 (505)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEE-----EECCCCEEHH
T ss_conf 89999999863330431440110011332475110456899999998658767762166755202-----6638740204
Q ss_pred CCHHHHHHH
Q ss_conf 939998887
Q gi|254780270|r 777 SFMGEVLKH 785 (820)
Q Consensus 777 ~~~~evl~~ 785 (820)
+|+.||.++
T Consensus 154 ~~L~~vv~f 162 (505)
T TIGR00368 154 DHLKEVVKF 162 (505)
T ss_pred HHHHHHHHH
T ss_conf 748999999
No 138
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.65 E-value=1.6e-06 Score=68.15 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=128.9
Q ss_pred HHCHHHHHHHHHHHHHHHHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEECCC
Q ss_conf 201168999999999999842---------444673599860565650279999997708----------8249986188
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRV---------IKNKGLILCFVGPPGVGKTSLAQSIAKATG----------RQYVRMSLGG 401 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~---------~~~~g~il~l~gppgvGKts~~~sia~al~----------r~f~~islgg 401 (820)
-=||++||+-|-|.-|.-..+ .+...=...|-|=||||||+.|+-||+-+. ....|
T Consensus 8 ~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ER----- 82 (261)
T TIGR02881 8 LVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVER----- 82 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE-----
T ss_conf 048889999999999999998888751011488447877427866843899999999985337567886788762-----
Q ss_pred CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH----HCCCCHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 8888883563200145671289999983278873999933155423----117711556655406001681332010352
Q gi|254780270|r 402 VYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS----DLRGDPSAALLEVLDPAQNSSFVDHYLEVE 477 (820)
Q Consensus 402 ~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~----~~~gdp~~allevldp~qn~~f~d~y~~~~ 477 (820)
|++-| =|||-+--|.=..+++|- -.|.++||===++. ||-=..-..|----- +|.++|
T Consensus 83 ----ADLVG---EYIGHTAqkTRe~~kkA~--GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mE-d~~~~l-------- 144 (261)
T TIGR02881 83 ----ADLVG---EYIGHTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKAME-DQRNEL-------- 144 (261)
T ss_pred ----CCCCC---CCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-HCCCCE--------
T ss_conf ----22122---320300489999999863--880055777776148888766208889999876-156986--------
Q ss_pred CCCCCEEEEEECCC-----CCCCHHHCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH---
Q ss_conf 36442799993486-----554413117247-998258786899989998608989986257813132289999999---
Q gi|254780270|r 478 YDLSDVMFIMTANT-----LNIPLPLMDRME-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDI--- 548 (820)
Q Consensus 478 ~dls~v~fi~tan~-----~~i~~~l~drme-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~i--- 548 (820)
|+.+|=+.+ |+..|=|..|+- .|+.|.||.+|=++||++.+=-+ +-.||.+|-.++
T Consensus 145 -----vlILAGY~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~R----------eY~Lt~~A~~~lr~~ 209 (261)
T TIGR02881 145 -----VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER----------EYKLTEEAKWKLREH 209 (261)
T ss_pred -----EEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHH----------HHCCCHHHHHHHHHH
T ss_conf -----89970876899998620779777665054188998889999999998646----------422578899999999
Q ss_pred HHCCC----CCC----HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 73177----410----2347888799998987654211785
Q gi|254780270|r 549 IRLFT----HEA----GVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 549 i~~Yt----~Ea----GvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
+..-. ++. =|||+ |++-+|+-|+.++...+
T Consensus 210 l~~~~~~~~~~~sNaR~vRN~---iE~AIR~QAvRlL~~~~ 247 (261)
T TIGR02881 210 LAKVDQLSSREFSNARYVRNI---IEKAIRRQAVRLLKKSD 247 (261)
T ss_pred HHHHHHHHHCCCCCCCHHHHH---HHHHHHHHHHHHHCCCC
T ss_conf 741244421005762012428---89999999987643464
No 139
>KOG2170 consensus
Probab=98.65 E-value=7.7e-08 Score=78.20 Aligned_cols=159 Identities=26% Similarity=0.424 Sum_probs=108.0
Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEE
Q ss_conf 322106889987766520116899999999999984244-46735998605656502799999977088-----249986
Q gi|254780270|r 325 KTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKATGR-----QYVRMS 398 (820)
Q Consensus 325 ~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~-~~g~il~l~gppgvGKts~~~sia~al~r-----~f~~is 398 (820)
....|+..-++-|+...||-.=||++|+--+--..-++. .|+-.|.|.|+|||||.-.++-||+.+-| +||..=
T Consensus 68 ~~~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~f 147 (344)
T KOG2170 68 DIRNDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHF 147 (344)
T ss_pred CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 66656067899999986320879999999999986289999875898308998756489999999987511256268876
Q ss_pred CCCCC--CHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 18888--8888356320014567128999998327887399993315542311771155665540600168133201035
Q gi|254780270|r 399 LGGVY--DEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEV 476 (820)
Q Consensus 399 lgg~~--d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~ 476 (820)
++-.+ +++.|. -|---+--+|.+... .|.+++|++||.|||-+ -|+++|-| |-|.|=.+
T Consensus 148 vat~hFP~~~~ie----~Yk~eL~~~v~~~v~--~C~rslFIFDE~DKmp~--------gLld~lkp-----fLdyyp~v 208 (344)
T KOG2170 148 VATLHFPHASKIE----DYKEELKNRVRGTVQ--ACQRSLFIFDEVDKLPP--------GLLDVLKP-----FLDYYPQV 208 (344)
T ss_pred HHHCCCCCHHHHH----HHHHHHHHHHHHHHH--HCCCCEEEECHHHHCCH--------HHHHHHHH-----HHCCCCCC
T ss_conf 5541599767899----999999999999998--55775487310543587--------69998766-----63046321
Q ss_pred C-CCCCCEEEEEECCCC-C-CCHHHCCCE
Q ss_conf 2-364427999934865-5-441311724
Q gi|254780270|r 477 E-YDLSDVMFIMTANTL-N-IPLPLMDRM 502 (820)
Q Consensus 477 ~-~dls~v~fi~tan~~-~-i~~~l~drm 502 (820)
. .|.-+.+||+-.|-- + |....++-+
T Consensus 209 ~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170 209 SGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 35545514899971786147799999999
No 140
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.8e-06 Score=67.79 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=100.3
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------EEEEECCCCC--------
Q ss_conf 6520116899999999999984244467359986056565027999999770882-------4998618888--------
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------YVRMSLGGVY-------- 403 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-------f~~islgg~~-------- 403 (820)
++..|.+.+++.+...+ ..+.-++.++|+||.|+||+++|...|++|--. ..|+.-|.--
T Consensus 4 ~~iiGq~~~~~~L~~ai-----~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAI-----EQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred CCCCCCHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECC
T ss_conf 31259499999999999-----8599674487789998329999999999985789999766558751899977886056
Q ss_pred ----------CHHHHCCCCCCCCCCCCHHHHHHHHH------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf ----------88883563200145671289999983------27887399993315542311771155665540600168
Q gi|254780270|r 404 ----------DEADIRGHRRTYIGSMPGRIIQSLKR------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNS 467 (820)
Q Consensus 404 ----------d~~~i~gh~~ty~ga~pg~ii~~l~~------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~ 467 (820)
++++-.|-.+.......=-=|+.+++ .....-|+++|+.|+|+.. -++|||-.|.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~----AaNaLLKtLE----- 149 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----AANALLKTLE----- 149 (314)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHH----HHHHHHHHHC-----
T ss_conf 2003454557789876530268777879999999999731885688479998897871999----9999998614-----
Q ss_pred CEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13320103523644279999348655-4413117247998258786899989998608
Q gi|254780270|r 468 SFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLV 524 (820)
Q Consensus 468 ~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~ 524 (820)
-| ++.+||..+++.+ +.+.++.|--.|.+...+.++-.++-+++..
T Consensus 150 --------EP---~~~~fILit~~~~~lLpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~ 196 (314)
T PRK07399 150 --------EP---GNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred --------CC---CCCEEEEEECCHHHCCHHHHCCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf --------78---785699997993649146641875633899899999999997166
No 141
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.62 E-value=3.3e-06 Score=65.84 Aligned_cols=184 Identities=24% Similarity=0.430 Sum_probs=126.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCC-CCCCCC---CHHHHHHHHHCCC
Q ss_conf 446735998605656502799999977088---249986188888---888356320-014567---1289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRR-TYIGSM---PGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~-ty~ga~---pg~ii~~l~~~~~ 432 (820)
.+..++| +.|.-||||..+|+.|.+.=.| ||+.+++|.+.. |||+=||-+ -+-||. .|++-++
T Consensus 162 ~s~a~VL-I~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A------ 234 (464)
T COG2204 162 PSDASVL-ITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQA------ 234 (464)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEC------
T ss_conf 7799789-977898758999999986074458992563346489888777761456567677643457615773------
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCEEEEEECC-CC-C-CC-----HHHCCCE
Q ss_conf 87399993315542311771155665540600168133201--03523644279999348-65-5-44-----1311724
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHY--LEVEYDLSDVMFIMTAN-TL-N-IP-----LPLMDRM 502 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y--~~~~~dls~v~fi~tan-~~-~-i~-----~~l~drm 502 (820)
....++||||-.|.-+.+ .-||-||- ...|.--= =.+++ +|=+||+.| ++ + |. .-|.-|+
T Consensus 235 ~GGTLfLDEI~~mpl~~Q----~kLLRvLq---e~~~~rvG~~~~i~v---dvRiIaaT~~dL~~~v~~G~FReDLyyRL 304 (464)
T COG2204 235 NGGTLFLDEIGEMPLELQ----VKLLRVLQ---EREFERVGGNKPIKV---DVRIIAATNRDLEEEVAAGRFREDLYYRL 304 (464)
T ss_pred CCCEEEEECCCCCCHHHH----HHHHHHHH---CCEEEECCCCCEECE---EEEEEEECCCCHHHHHHCCCCHHHHHHHH
T ss_conf 796587323110999999----99999987---070673588860000---16999605778999988197378888652
Q ss_pred EEEEE--CCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 79982--58786-899989998608989986257813132289999999731774102347888799
Q gi|254780270|r 503 EIIRI--AGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALM 566 (820)
Q Consensus 503 e~i~~--~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~ 566 (820)
-|+.+ |+.-. .|-+-.--+|++.+..+++|. ....|+.+++.. ...|.+-.-||+|+-.+.
T Consensus 305 nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~--~~~~~s~~a~~~-L~~y~WPGNVREL~N~ve 368 (464)
T COG2204 305 NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR--PPKGFSPEALAA-LLAYDWPGNVRELENVVE 368 (464)
T ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHH-HHHCCCCHHHHHHHHHHH
T ss_conf 3311048762236200799999999999998099--988879999999-973899818999999999
No 142
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=8.2e-07 Score=70.42 Aligned_cols=145 Identities=11% Similarity=0.163 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE-EEECCCCC-CHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999998424446735998605656502799999977088249-98618888-88883563200145671289999
Q gi|254780270|r 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV-RMSLGGVY-DEADIRGHRRTYIGSMPGRIIQS 426 (820)
Q Consensus 349 ~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~-~islgg~~-d~~~i~gh~~ty~ga~pg~ii~~ 426 (820)
|.|+.+| ......+.-+...+|.||+|+|||+.|+.+|+++.-.-. ..+.+... |...+..-.- .+---.++..
T Consensus 4 e~iv~~L-~nai~~~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~---~i~~~~i~~~ 79 (303)
T PRK07132 4 NNIIKSL-DNLAKQNKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDE---DLSKEEFLSA 79 (303)
T ss_pred HHHHHHH-HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC---CHHHHHHHHH
T ss_conf 3899999-99998499761688678998679999999999972998788875456532304133222---0016889999
Q ss_pred HHHC---C---CCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHC
Q ss_conf 9832---7---88739999331554231177115566554060016813320103523644279999348655-441311
Q gi|254780270|r 427 LKRA---K---RSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLM 499 (820)
Q Consensus 427 l~~~---~---~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~ 499 (820)
++.. . ...-|+++||+|+|+.. .++|||-.|. -|- ++|+||..+++.+ ||+..+
T Consensus 80 i~~~~~~~~~~~~~Kv~IIdea~~lt~~----A~NaLLKtLE-------------EPp--~~~~fil~t~~~~~il~TI~ 140 (303)
T PRK07132 80 IEKFSFSSFVSNQKKILIIKNIEKTSNS----SLNALLKTIE-------------EPS--KNTYFLLTTKNINKVIPTIV 140 (303)
T ss_pred HHHHHHCCCCCCCEEEEEEECHHHCCHH----HHHHHHHHCC-------------CCC--CCEEEEEEECCHHHCCHHHH
T ss_conf 9999736655687069998165533999----9999998703-------------898--68489997288243837786
Q ss_pred CCEEEEEECCCCHHHHH
Q ss_conf 72479982587868999
Q gi|254780270|r 500 DRMEIIRIAGYTEEEKL 516 (820)
Q Consensus 500 drme~i~~~~y~~~ek~ 516 (820)
.|--++.+.....++=.
T Consensus 141 SRCq~~~f~~~~~~~i~ 157 (303)
T PRK07132 141 SRCQVINVKEPDQQKIL 157 (303)
T ss_pred HCCEEEECCCCCHHHHH
T ss_conf 36656637889999999
No 143
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=8e-07 Score=70.49 Aligned_cols=197 Identities=18% Similarity=0.265 Sum_probs=129.1
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------------EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 4244467359986056565027999999770882-------------499861888888883563200145671289999
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------------YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQS 426 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-------------f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~ 426 (820)
+..+.-....+|.|+-||||||+||-+||+||-. +..|.-|---|--||.+-+||-|..|-- ++..
T Consensus 32 ~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~-~~~~ 110 (663)
T PRK08770 32 LDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVRE-VIEN 110 (663)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHH-HHHH
T ss_conf 970997404762279988888999999998678999999978778778988548988658864676588899999-9984
Q ss_pred HHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE
Q ss_conf 983--2788739999331554231177115566554060016813320103523644279999348655-4413117247
Q gi|254780270|r 427 LKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME 503 (820)
Q Consensus 427 l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme 503 (820)
..- +...--|+++||+.-+|.+. .+|||..|. -|= ..|.||+---+.+ ||...+.|--
T Consensus 111 ~~~~p~~~~~kvy~idevhmls~~~----fna~lktle-------------epp--~~v~f~~att~~~k~p~t~~src~ 171 (663)
T PRK08770 111 AQYMPSRGKFKVYLIDEVHMLSKAA----FNALLKTLE-------------EPP--EHVKFLLATTDPQKLPVTVLSRCL 171 (663)
T ss_pred CCCCCCCCCEEEEEEECHHHCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCHHHHHHHH
T ss_conf 4358877743699970043328999----999987402-------------786--442899854873337489998887
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99825878689998999860898998625781313228999999973177410234788879999898765421178520
Q gi|254780270|r 504 IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTT 583 (820)
Q Consensus 504 ~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~ 583 (820)
-..+..-+.++-.. .++. =+..+.+.++++++..|-+. -+.++|+--..+...+. + + .
T Consensus 172 ~f~~~~~~~~~~~~---------~l~~-~~~~e~~~~~~~~~~~~~~~--~~gs~rd~lsl~~q~~~-----~--~---~ 229 (663)
T PRK08770 172 QFNLKRLDEDQIQG---------QMTR-ILAAEQIESDPSAIVQLSKA--ADGSLRDGLSLLDQAIA-----Y--A---G 229 (663)
T ss_pred HCCCCCCCHHHHHH---------HHHH-HHHHCCCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH-----H--C---C
T ss_conf 63437799999999---------9999-99983997699999999997--47856778889999998-----6--6---8
Q ss_pred ECCCHHHHHHHHCCC
Q ss_conf 127967867530520
Q gi|254780270|r 584 VSINENNLQDYLGVP 598 (820)
Q Consensus 584 ~~i~~~~l~~~lg~~ 598 (820)
-.|+.+++.+.||.-
T Consensus 230 ~~~~~~~v~~mlg~~ 244 (663)
T PRK08770 230 GALREDVVRTMLGTV 244 (663)
T ss_pred CCCCHHHHHHHHCCC
T ss_conf 976899999984888
No 144
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.59 E-value=2.2e-07 Score=74.78 Aligned_cols=197 Identities=24% Similarity=0.362 Sum_probs=111.5
Q ss_pred HHHHHHCHHHHHHHHHHHH--HHHHHCCC---CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEE----ECCC-----
Q ss_conf 7665201168999999999--99984244---46735-99860565650279999997708824998----6188-----
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYL--AVQMRVIK---NKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRM----SLGG----- 401 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~l--av~~~~~~---~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~i----slgg----- 401 (820)
+=-..||++.||+-|+=.| .|.+..++ .+|-| +||+|-|||||+.+-|.+++.+-|--+.- |-.|
T Consensus 284 iaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 284 IAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEE
T ss_conf 41510381999999999960897664799862024226998179825199999998864884079726412545730699
Q ss_pred CCCHHHHCCCCCC-CCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 8888883563200-145671289999983278873999933155423117711556655406001681332010352364
Q gi|254780270|r 402 VYDEADIRGHRRT-YIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 (820)
Q Consensus 402 ~~d~~~i~gh~~t-y~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl 480 (820)
++|+- .| .+| =-||+ +-.-|.|-.+||.|||...-+ +|+.|+.. |+. -+=.=-+|-.-|
T Consensus 364 ~rd~~--tg-e~~LeaGAL----------VlAD~Gv~cIDEfdKm~~~dr----~aihEaME--QQt-IsIaKAGI~atL 423 (682)
T COG1241 364 VRDKV--TG-EWVLEAGAL----------VLADGGVCCIDEFDKMNEEDR----VAIHEAME--QQT-ISIAKAGITATL 423 (682)
T ss_pred EECCC--CC-EEEEECCEE----------EEECCCEEEEEECCCCCHHHH----HHHHHHHH--HCE-EEECCCCEEEEC
T ss_conf 97067--76-078867779----------992497799970567776789----99999987--527-512055425411
Q ss_pred -CCEEEEEECCC--------------CCCCHHHCCCEEEEEECCCCHHHH--HHHH----HHHHH---------------
Q ss_conf -42799993486--------------554413117247998258786899--9899----98608---------------
Q gi|254780270|r 481 -SDVMFIMTANT--------------LNIPLPLMDRMEIIRIAGYTEEEK--LQIA----KNHLV--------------- 524 (820)
Q Consensus 481 -s~v~fi~tan~--------------~~i~~~l~drme~i~~~~y~~~ek--~~i~----~~~l~--------------- 524 (820)
+++=++|.||- +++|+||+.|..+|.+-.=..+++ ..|| ..|.-
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 14444566518877767999997885589835775177547705788853359999999998634565322333322222
Q ss_pred ----HHHHHHHCC-CC--CCCCCCHHHHHHHHHCCC
Q ss_conf ----989986257-81--313228999999973177
Q gi|254780270|r 525 ----KKVLTEHAL-KQ--EECCISDGVLLDIIRLFT 553 (820)
Q Consensus 525 ----p~~~~~~~~-~~--~~~~~~~~~i~~ii~~Yt 553 (820)
+..+.++.. .. -.-.++++|.+.|.+.|.
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv 539 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYV 539 (682)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 346589999999987505896128999999999998
No 145
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.58 E-value=3.3e-07 Score=73.37 Aligned_cols=130 Identities=25% Similarity=0.409 Sum_probs=88.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCH---HHHCCCCC-CCCCC---CCHHHHHHHHHCCC
Q ss_conf 4467359986056565027999999770---882499861888888---88356320-01456---71289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDE---ADIRGHRR-TYIGS---MPGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~---~~i~gh~~-ty~ga---~pg~ii~~l~~~~~ 432 (820)
....||| +.|++||||+.+|+.|...- +.||+.+.++++.++ +++-||.+ .|.|| .+|.+- ..
T Consensus 20 ~~~~pVL-I~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~le------~A 92 (168)
T pfam00158 20 PTDATVL-ITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLFE------LA 92 (168)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE------EC
T ss_conf 8899889-9899988889999999985243568831256789987799998758766766898757899642------26
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-CC-------CCHHHCCCEEE
Q ss_conf 87399993315542311771155665540600168133201035236442799993486-55-------44131172479
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-LN-------IPLPLMDRMEI 504 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-~~-------i~~~l~drme~ 504 (820)
.+..++|||||.++.+.+. .||.+|+ +..|.-.==.-+++ ++|-+|||.+. +. .-+-|..|+-|
T Consensus 93 ~gGTL~LdeI~~L~~~~Q~----~Ll~~L~---~~~~~~~g~~~~~~-~~vRiIast~~~L~~~v~~G~Fr~DLyyrLnv 164 (168)
T pfam00158 93 DGGTLFLDEIGELPLELQA----KLLRVLQ---EGEFERVGGTKPIK-VDVRIIAATNRDLEEAVAEGRFREDLYYRLNV 164 (168)
T ss_pred CCCEEECCCHHHCCHHHHH----HHHHHHH---CCEEEECCCCCEEE-EEEEEEEECCCCHHHHHHCCCCHHHHHHHHCE
T ss_conf 9987880244139999999----9999985---79699779984588-85499996598899998839963998888652
Q ss_pred EEE
Q ss_conf 982
Q gi|254780270|r 505 IRI 507 (820)
Q Consensus 505 i~~ 507 (820)
+.+
T Consensus 165 ~~i 167 (168)
T pfam00158 165 VPI 167 (168)
T ss_pred EEC
T ss_conf 326
No 146
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.58 E-value=2.2e-07 Score=74.66 Aligned_cols=127 Identities=25% Similarity=0.311 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHC----CCCCCCCCCCCHHHHH-HHHHCCCCC-E
Q ss_conf 67359986056565027999999770882---4998618888888835----6320014567128999-998327887-3
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIR----GHRRTYIGSMPGRIIQ-SLKRAKRSN-P 435 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~----gh~~ty~ga~pg~ii~-~l~~~~~~n-p 435 (820)
++..+.++||||+|||++++.+|..++.. ++.++.....+..... .....+...+..+.+. .+..+.... -
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99789999999702999999999872668996899875998988898765300011221051999999999999844998
Q ss_pred EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--CCCCHHHCCCE
Q ss_conf 99993315542311771155665540600168133201035236442799993486--55441311724
Q gi|254780270|r 436 LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--LNIPLPLMDRM 502 (820)
Q Consensus 436 v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~~i~~~l~drm 502 (820)
|+++||++.+..... +.++..... .+............+||++|. ..++..++.|.
T Consensus 81 viiiDei~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~~~~ 138 (148)
T smart00382 81 VLILDEITSLLDAEQ----EALLLLLEE-------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138 (148)
T ss_pred EEEEECCHHHCCCCC----HHHHHHHHH-------HHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCC
T ss_conf 999827502147620----799999999-------9985176578998999956995224987707447
No 147
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=2.9e-07 Score=73.79 Aligned_cols=133 Identities=20% Similarity=0.279 Sum_probs=86.5
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCCCCCC--------H---HH--
Q ss_conf 8424446735998605656502799999977088249--9861888888883563200145671--------2---89--
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV--RMSLGGVYDEADIRGHRRTYIGSMP--------G---RI-- 423 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~--~islgg~~d~~~i~gh~~ty~ga~p--------g---~i-- 423 (820)
.+..+.-+.-+.|+||+|+||+++|+.+|++|.=.-- --+.|-... +++..-|.-| | +|
T Consensus 21 ~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~------C~~~~~~~HPD~~~i~p~~~~i~idq 94 (329)
T PRK08058 21 SIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTN------CKRIESGNHPDVHLVAPDGQSIKKDQ 94 (329)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEECCCCCCCCHHH
T ss_conf 998599661565578999889999999999973999999998878889------99987699997677456614077999
Q ss_pred HHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCH
Q ss_conf 9999832------788739999331554231177115566554060016813320103523644279999348655-441
Q gi|254780270|r 424 IQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPL 496 (820)
Q Consensus 424 i~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~ 496 (820)
|+.|++. ....=|+++|+.|+|+.. -++|||-.|- -|= .+++||.++++.+ +++
T Consensus 95 iR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~----AaNALLKtLE-------------EPp--~~t~fIL~t~~~~~lLp 155 (329)
T PRK08058 95 IRYLKEEFSKSGVESNKKVYIIEHADKMTAS----AANSLLKFLE-------------EPS--GDTTAILLTENKHQILP 155 (329)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECHHHHCHH----HHHHHHHHHH-------------CCC--CCCEEEEEECCHHHHHH
T ss_conf 9999999643875788679997347762999----9999999864-------------689--78679987299666436
Q ss_pred HHCCCEEEEEECCCCHHHHH
Q ss_conf 31172479982587868999
Q gi|254780270|r 497 PLMDRMEIIRIAGYTEEEKL 516 (820)
Q Consensus 497 ~l~drme~i~~~~y~~~ek~ 516 (820)
..+.|--.+.++..+.++=.
T Consensus 156 TI~SRCq~i~f~~~~~~~i~ 175 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLI 175 (329)
T ss_pred HHHHCCEEEECCCCCHHHHH
T ss_conf 88631425658899999999
No 148
>KOG0652 consensus
Probab=98.56 E-value=6.6e-07 Score=71.13 Aligned_cols=161 Identities=29% Similarity=0.446 Sum_probs=105.8
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCC-------C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 520116899999999999984244-------4-67359986056565027999999770882499861888888883563
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIK-------N-KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~-------~-~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
|.-||++--+-.+|-+ |.-++.. . ...-.+++||||+|||-+|+..|...+--|. -|.|-.=.
T Consensus 172 DiGGldkQIqELvEAi-VLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL--KLAgPQLV------ 242 (424)
T KOG0652 172 DIGGLDKQIQELVEAI-VLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL--KLAGPQLV------ 242 (424)
T ss_pred CCCCHHHHHHHHHHHH-CCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHH--HHCCHHHH------
T ss_conf 0325789999999886-14565687887468889972276579997577999999874010688--73264777------
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH-----CCCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 200145671289999983278873-9999331554231-----17711--556655406001681332010352364427
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD-----LRGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~-----~~gdp--~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
.-|+|--.-..-.+..-|+..-| +|++||+|-+|.- ..||- ...|||+|. |-..|.-. -+|
T Consensus 243 -QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLN--QLDGFss~--------~~v 311 (424)
T KOG0652 243 -QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN--QLDGFSSD--------DRV 311 (424)
T ss_pred -HHHHCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCCC--------CCE
T ss_conf -6653341889999998753349838997300232334365312343899999999998--60489975--------626
Q ss_pred EEEEECCCCCC-CHHH-----CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99993486554-4131-----172479982587868999899986
Q gi|254780270|r 484 MFIMTANTLNI-PLPL-----MDRMEIIRIAGYTEEEKLQIAKNH 522 (820)
Q Consensus 484 ~fi~tan~~~i-~~~l-----~drme~i~~~~y~~~ek~~i~~~~ 522 (820)
-.|+..|-.+| .++| +||- |++|--+.+-...|-+-|
T Consensus 312 KviAATNRvDiLDPALlRSGRLDRK--IEfP~Pne~aRarIlQIH 354 (424)
T KOG0652 312 KVIAATNRVDILDPALLRSGRLDRK--IEFPHPNEEARARILQIH 354 (424)
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHH
T ss_conf 7885216434348888644664444--348899778988999886
No 149
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.56 E-value=1.9e-06 Score=67.62 Aligned_cols=178 Identities=26% Similarity=0.370 Sum_probs=112.5
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
Q ss_conf 20116899999999999984244467359986056565027999999770----------88249986188888888356
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRG 410 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~~~i~g 410 (820)
..|=++==+|+++.|+=+.-| + -||+|.||||||.|+..+|... +...+.+.+|.+ +-|
T Consensus 188 viGR~~Ei~r~i~iL~Rr~KN-N-----piLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~L-----iAG 256 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRKN-N-----PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-----LAG 256 (758)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-C-----CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH-----HCC
T ss_conf 738489999999999763258-9-----60216999869999999999997389976558988998458778-----616
Q ss_pred CCCCCCCCCCHHHHHHHHHC-CCCCEEEEEECHHHH-H--HHCCC--CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 32001456712899999832-788739999331554-2--31177--115566554060016813320103523644279
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRA-KRSNPLLLLDEIDKM-G--SDLRG--DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVM 484 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~-~~~npv~~ldeidk~-~--~~~~g--dp~~allevldp~qn~~f~d~y~~~~~dls~v~ 484 (820)
. .|-|..-.|+-.-+... ...|.++++|||--+ | +...| |.++.|--.|.- -.+ +++
T Consensus 257 t--kyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~Lar---G~l------------~~I 319 (758)
T PRK11034 257 T--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS---GKI------------RVI 319 (758)
T ss_pred C--CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC---CCC------------EEE
T ss_conf 8--64154999999999999857985999804344226887677764678874578746---972------------399
Q ss_pred EEEECCCC----CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 99934865----544131172479982587868999899986089899862578131322899999997317
Q gi|254780270|r 485 FIMTANTL----NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 485 fi~tan~~----~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
--+|.+.. .-.++|--|++.|.+.--+.+|-+.|-+. +.++--+-| .|.++|+||...++-.
T Consensus 320 gaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~g-l~~~yE~~H-----~v~~~d~al~~av~Ls 385 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING-LKPKYEAHH-----DVRYTAKAVRAAVELA 385 (758)
T ss_pred EECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHH-HHHHHHHCC-----CCEECCHHHHHHHHHH
T ss_conf 94377998750321478884282653189998999999998-999873236-----9577438999999999
No 150
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.56 E-value=1.5e-06 Score=68.40 Aligned_cols=146 Identities=25% Similarity=0.483 Sum_probs=98.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCC-----CCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf 5998605656502799999977088249986188888888356320014-----56712899999832788739999331
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYI-----GSMPGRIIQSLKRAKRSNPLLLLDEI 442 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~-----ga~pg~ii~~l~~~~~~npv~~ldei 442 (820)
-+.|.|.||||||||-...|+-+|.+.+||.|.-..|--++-|..---. -=|-.-+..+|++.+ -+||||+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~----WVlLDEi 1620 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG----WVLLDEI 1620 (4600)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCHHHHHHHCCC----EEEEEHH
T ss_conf 546227998667899999999745724786320110289873778875567616742468999853498----7996241
Q ss_pred HHHHHHC-CCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEE-EEEECCCC-------CCCHHHCCCEEEEEECCCCHH
Q ss_conf 5542311-77115566554060016813320103523644279-99934865-------544131172479982587868
Q gi|254780270|r 443 DKMGSDL-RGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVM-FIMTANTL-------NIPLPLMDRMEIIRIAGYTEE 513 (820)
Q Consensus 443 dk~~~~~-~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~-fi~tan~~-------~i~~~l~drme~i~~~~y~~~ 513 (820)
.-.|++- -| |=-+||. .|..|.- -+|..||----+ ..|+-|.- ..|.-.++|.-+|.+.+||.+
T Consensus 1621 NLaSQSVlEG-----LNacLDh-R~eayIP-Eld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~d 1693 (4600)
T COG5271 1621 NLASQSVLEG-----LNACLDH-RREAYIP-ELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTD 1693 (4600)
T ss_pred HHHHHHHHHH-----HHHHHHH-CCCCCCC-CCCCEEECCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHEEEECCCCCC
T ss_conf 0327889988-----8998850-1442563-1133252168705542048110279856687888622115775034530
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999899986089
Q gi|254780270|r 514 EKLQIAKNHLVK 525 (820)
Q Consensus 514 ek~~i~~~~l~p 525 (820)
+-++||+. +.|
T Consensus 1694 Di~~Ia~~-~yp 1704 (4600)
T COG5271 1694 DITHIANK-MYP 1704 (4600)
T ss_pred HHHHHHHH-HCC
T ss_conf 09999985-177
No 151
>KOG0991 consensus
Probab=98.54 E-value=2.8e-07 Score=73.96 Aligned_cols=218 Identities=26% Similarity=0.352 Sum_probs=122.3
Q ss_pred HCCCCC-CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCC
Q ss_conf 404158-766322106889987766520116899999999999984244467359986056565027999999770-882
Q gi|254780270|r 316 LGVPWD-KKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT-GRQ 393 (820)
Q Consensus 316 ~~lPW~-~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al-~r~ 393 (820)
.++||- ||-+..+ .|.-|-|+.-+| |.| ...+.+-|-|.+.||||+|||+-....|++| |+.
T Consensus 13 ~~l~wVeKYrP~~l----------~dIVGNe~tv~r----l~v--ia~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~ 76 (333)
T KOG0991 13 YQLPWVEKYRPSVL----------QDIVGNEDTVER----LSV--IAKEGNMPNLIISGPPGTGKTTSILCLARELLGDS 76 (333)
T ss_pred CCCHHHHHHCCHHH----------HHHHCCHHHHHH----HHH--HHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCHH
T ss_conf 11357886085299----------882177989999----999--99728998667527999861648999999983806
Q ss_pred EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-----EEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 49986188888888356320014567128999998327887-----3999933155423117711556655406001681
Q gi|254780270|r 394 YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN-----PLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSS 468 (820)
Q Consensus 394 f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n-----pv~~ldeidk~~~~~~gdp~~allevldp~qn~~ 468 (820)
+- =.+=-++ .|+=||-. -.-- -|.....-++.- -+++|||-|-|..+.+- ||--...-
T Consensus 77 ~k-e~vLELN-ASdeRGID-----vVRn-~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQ----AlRRtMEi----- 139 (333)
T KOG0991 77 YK-EAVLELN-ASDERGID-----VVRN-KIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQ----ALRRTMEI----- 139 (333)
T ss_pred HH-HHHHHCC-CCCCCCCH-----HHHH-HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHH----HHHHHHHH-----
T ss_conf 66-5763205-76554608-----9999-9999987203489985248996152202068999----99999999-----
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 3320103523644279999348655-441311724799825878689998999860898998625781313228999999
Q gi|254780270|r 469 FVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLD 547 (820)
Q Consensus 469 f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ 547 (820)
--|..-|..-.|..+ |-+|+-.|--+...+-.+.. +| +.+.++-. +.+.+.++++.++.
T Consensus 140 ----------yS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~---qi-----L~Rl~~v~--k~Ekv~yt~dgLea 199 (333)
T KOG0991 140 ----------YSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQ---QI-----LKRLLEVA--KAEKVNYTDDGLEA 199 (333)
T ss_pred ----------HCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHH---HH-----HHHHHHHH--HHHCCCCCCCHHHH
T ss_conf ----------706320000015421322267734576532226789---99-----99999999--87078877114778
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 9731774102347888799998987654211785201279678675305200
Q gi|254780270|r 548 IIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 548 ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
||- |-+.-+|+---.+. .-+ ...-.|+.+++.+..+.|.
T Consensus 200 iif--ta~GDMRQalNnLQ---st~--------~g~g~Vn~enVfKv~d~Ph 238 (333)
T KOG0991 200 IIF--TAQGDMRQALNNLQ---STV--------NGFGLVNQENVFKVCDEPH 238 (333)
T ss_pred HHH--HCCCHHHHHHHHHH---HHH--------CCCCCCCHHHHHHCCCCCC
T ss_conf 554--41661999999999---874--------0545246323100069998
No 152
>KOG1969 consensus
Probab=98.53 E-value=2.6e-06 Score=66.65 Aligned_cols=161 Identities=25% Similarity=0.321 Sum_probs=103.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC----C--CEEEE
Q ss_conf 67359986056565027999999770882499861888888883563200145671289999983278----8--73999
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR----S--NPLLL 438 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~----~--npv~~ 438 (820)
.-.||+|+||||.|||+||.-||+--|-..+.|.-.--|-.+.++ -||-.++...-+ . +|+ +
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~-----------~kI~~avq~~s~l~adsrP~CL-V 392 (877)
T KOG1969 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVK-----------EKIENAVQNHSVLDADSRPVCL-V 392 (877)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHCCCCCCCCCCCEE-E
T ss_conf 400687536887872479999998628548873255543478899-----------9999988641122568886359-9
Q ss_pred EECHHHHHHHCCCCHH--HHHHHHCCC-------CCCCCE---EEEECCCCCC-CCCEEEEEECCCC-C-CCHHHCCCEE
Q ss_conf 9331554231177115--566554060-------016813---3201035236-4427999934865-5-4413117247
Q gi|254780270|r 439 LDEIDKMGSDLRGDPS--AALLEVLDP-------AQNSSF---VDHYLEVEYD-LSDVMFIMTANTL-N-IPLPLMDRME 503 (820)
Q Consensus 439 ldeidk~~~~~~gdp~--~allevldp-------~qn~~f---~d~y~~~~~d-ls~v~fi~tan~~-~-i~~~l~drme 503 (820)
+||||-- +++ .+||.++-- .|+.+- .+.- +- |++ =.||-+|++ . --+||+---+
T Consensus 393 iDEIDGa------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr----~~~L~R-PIICICNdLYaPaLR~Lr~~A~ 461 (877)
T KOG1969 393 IDEIDGA------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKR----SKLLTR-PIICICNDLYAPALRPLRPFAE 461 (877)
T ss_pred EECCCCC------CHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHC----CCCCCC-CEEEEECCCCCHHHHHCCCCEE
T ss_conf 8424687------2899999999997416142168663203455530----465458-7789864755533331021048
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 998258786899989998608989986257813132289999999731774102347
Q gi|254780270|r 504 IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS 560 (820)
Q Consensus 504 ~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~ 560 (820)
+|.+..-+..-=+ +-+++.+.. +.+..+-.+|..+++.|.. -+|.
T Consensus 462 ii~f~~p~~s~Lv---------~RL~~IC~r-E~mr~d~~aL~~L~el~~~--DIRs 506 (877)
T KOG1969 462 IIAFVPPSQSRLV---------ERLNEICHR-ENMRADSKALNALCELTQN--DIRS 506 (877)
T ss_pred EEEECCCCHHHHH---------HHHHHHHHH-HCCCCCHHHHHHHHHHHCC--HHHH
T ss_conf 9995699766899---------999999764-1577887899999998613--0988
No 153
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=1.2e-05 Score=61.71 Aligned_cols=181 Identities=19% Similarity=0.309 Sum_probs=114.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHH---HHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 4467359986056565027999999---7708824998618888888835632001456712899999832788739999
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIA---KATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLL 439 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia---~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~l 439 (820)
...+..+.|+||+|.|||.|+.+++ ...|+....+++....+ ..|. +++++ ....++.+
T Consensus 38 ~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~-------------~~~~-~l~~l----e~~~ll~i 99 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAG-------------RLRD-ALEAL----EGRSLVAL 99 (233)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHH-------------HHHH-HHHHH----CCCCEEEE
T ss_conf 888898999899999889999999999982799728844788532-------------0256-77531----03897898
Q ss_pred ECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC----CCCHH-HCCC---EEEEEECCCC
Q ss_conf 33155423117711556655406001681332010352364427999934865----54413-1172---4799825878
Q gi|254780270|r 440 DEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL----NIPLP-LMDR---MEIIRIAGYT 511 (820)
Q Consensus 440 deidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~----~i~~~-l~dr---me~i~~~~y~ 511 (820)
|-||.++... +-.-||.++..-- .+ ++.-.+.|++.. ++--| |+.| +.++++...+
T Consensus 100 DDid~i~g~~--~~e~aLFhL~N~~-------------~~-~~~~ll~ts~~~P~~l~~~l~DL~SRL~~~~~~~l~~~d 163 (233)
T PRK08727 100 DGVDSIAGQR--EDEVALFDFHNRA-------------RA-AGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLD 163 (233)
T ss_pred ECCHHCCCCH--HHHHHHHHHHHHH-------------HH-CCCEEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 5501126982--7999999999999-------------86-198389977989566231002199999669228857889
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 68999899986089899862578131322899999997317741023478887999989876542117852012796786
Q gi|254780270|r 512 EEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNL 591 (820)
Q Consensus 512 ~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l 591 (820)
.++|..|.+++. . ...+.++++++.||+++..|. .+.|.+.+..+-+..-.. +-.||.-.+
T Consensus 164 D~~~~~iL~~~a-----~-----~rgl~l~~~V~~Yll~r~~R~--~~~l~~~l~~LD~~SL~~-------kr~iTip~v 224 (233)
T PRK08727 164 DVARAAVLRDRA-----Q-----RRGLALDEAAIDWLLTHGERE--LAGLVALLDRLDRESLAA-------KRRITVPFL 224 (233)
T ss_pred HHHHHHHHHHHH-----H-----HCCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHC-------CCCCCHHHH
T ss_conf 799999999999-----9-----869999989999999856889--999999999999999980-------898889999
Q ss_pred HHHHC
Q ss_conf 75305
Q gi|254780270|r 592 QDYLG 596 (820)
Q Consensus 592 ~~~lg 596 (820)
++.|.
T Consensus 225 k~vL~ 229 (233)
T PRK08727 225 RRVLE 229 (233)
T ss_pred HHHHH
T ss_conf 99997
No 154
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=5.2e-07 Score=71.93 Aligned_cols=159 Identities=15% Similarity=0.229 Sum_probs=95.8
Q ss_pred HHHCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-EECCCCCCHHHH-CC
Q ss_conf 52011689999999999998-------4244467359986056565027999999770882499-861888888883-56
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQM-------RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVR-MSLGGVYDEADI-RG 410 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~-------~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~-islgg~~d~~~i-~g 410 (820)
+.-|-+.|.+..-.-++-.. .+++.-..-..|+||+|+|||++|+..|++|+=+-.- -+.|....--.| .|
T Consensus 6 ~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g 85 (395)
T PRK07940 6 RLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAG 85 (395)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 31592999999999998363434433334687660376368998788999999999966999999999878789998768
Q ss_pred -C-CCCCC---CCCCH-HHHHHHHH------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf -3-20014---56712-89999983------2788739999331554231177115566554060016813320103523
Q gi|254780270|r 411 -H-RRTYI---GSMPG-RIIQSLKR------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 411 -h-~~ty~---ga~pg-~ii~~l~~------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~ 478 (820)
| ...++ |+.=| -=|..|.. ....--|+++|+.|+|+.. .++|||-.| +-|=
T Consensus 86 ~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~----a~NalLKtL-------------EEPp 148 (395)
T PRK07940 86 THPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTER----AANALLKAV-------------EEPP 148 (395)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHH----HHHHHHHHH-------------CCCC
T ss_conf 99871898268776889999999999852730379559998077874899----999999852-------------1788
Q ss_pred CCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 644279999348655-441311724799825878689998
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQ 517 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~ 517 (820)
.+++||..+++.+ +++..+.|-..+.+..-+.++=..
T Consensus 149 --~~~~fiL~t~~~~~llpTI~SRcq~~~f~~~~~~~i~~ 186 (395)
T PRK07940 149 --PRTVWLLCAPSVEDVLPTIRSRCRHVALRTPSVEAVAD 186 (395)
T ss_pred --CCEEEEEEECCHHHHHHHHHHHHEECCCCCCCHHHHHH
T ss_conf --88699987399787446887440002379999999999
No 155
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=3.4e-06 Score=65.77 Aligned_cols=199 Identities=22% Similarity=0.348 Sum_probs=129.6
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCC-CCCCCCC----HHHHHH
Q ss_conf 98424446735998605656502799999977088---249986188888---888356320-0145671----289999
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRR-TYIGSMP----GRIIQS 426 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~-ty~ga~p----g~ii~~ 426 (820)
-+.-.....+|| +.|--||||--+|++|.++-.| ||++|.+|-+-+ |||+=|+-+ -|-||-. |++=.|
T Consensus 261 akr~A~tdstVL-i~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A 339 (560)
T COG3829 261 AKRIAKTDSTVL-ILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELA 339 (560)
T ss_pred HHHHCCCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 986338998289-9537886689999998744843479807876433888888888727677642464457997605441
Q ss_pred HHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCEEEEEECCC-------------
Q ss_conf 98327887399993315542311771155665540600168133201--035236442799993486-------------
Q gi|254780270|r 427 LKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHY--LEVEYDLSDVMFIMTANT------------- 491 (820)
Q Consensus 427 l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y--~~~~~dls~v~fi~tan~------------- 491 (820)
.+.-++||||.-|....++ -||-|| |-++|.--= -.+|. +|=.|++-|-
T Consensus 340 ------~gGTLFLDEIgempl~LQa----KLLRVL---QEkei~rvG~t~~~~v---DVRIIAATN~nL~~~i~~G~FRe 403 (560)
T COG3829 340 ------NGGTLFLDEIGEMPLPLQA----KLLRVL---QEKEIERVGGTKPIPV---DVRIIAATNRNLEKMIAEGTFRE 403 (560)
T ss_pred ------CCCEEEEHHHCCCCHHHHH----HHHHHH---HHCEEEECCCCCCEEE---EEEEEECCCCCHHHHHHCCCCHH
T ss_conf ------6983771232039989999----999987---5353785378875356---78999425758999986396165
Q ss_pred --------CC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf --------55-441311724799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 492 --------LN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 492 --------~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
+. --||||+|- |-+..--.|++-+.-..+|- .--.++++++.. ...|.+-.-||+|+
T Consensus 404 DLYYRLNV~~i~iPPLReR~-----------eDI~~L~~~Fl~k~s~~~~~--~v~~ls~~a~~~-L~~y~WPGNVRELe 469 (560)
T COG3829 404 DLYYRLNVIPITIPPLRERK-----------EDIPLLAEYFLDKFSRRYGR--NVKGLSPDALAL-LLRYDWPGNVRELE 469 (560)
T ss_pred HHEEEECEEEECCCCCCCCC-----------CHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHH-HHHCCCCCHHHHHH
T ss_conf 53003040111477723382-----------01899999999999987288--766689999999-98689996099999
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCHHHHH-HHH
Q ss_conf 879999898765421178520127967867-530
Q gi|254780270|r 563 RALMKIARKAVTKIVKNSDTTVSINENNLQ-DYL 595 (820)
Q Consensus 563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~-~~l 595 (820)
-.|+.+ +.++.+... |+..++. .++
T Consensus 470 NviER~-----v~~~~~~~~---I~~~~lp~~~l 495 (560)
T COG3829 470 NVIERA-----VNLVESDGL---IDADDLPAFAL 495 (560)
T ss_pred HHHHHH-----HHCCCCCCE---EEHHHCCHHHH
T ss_conf 999999-----810688662---22522620231
No 156
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.7e-07 Score=71.10 Aligned_cols=142 Identities=29% Similarity=0.445 Sum_probs=73.3
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHH---------HHHC-------------------
Q ss_conf 520116899999999999984244467359986056565027999999---------7708-------------------
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIA---------KATG------------------- 391 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia---------~al~------------------- 391 (820)
|.-|.+.+|.- +|.-| ..|--|.|+||||+|||-||+-+. ++|-
T Consensus 180 DV~GQ~~AKrA-leiAA-------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~~~~ 251 (490)
T COG0606 180 DVKGQEQAKRA-LEIAA-------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred HHCCCHHHHHH-HHHHH-------HCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 64384999999-99998-------43886787569988656764231025999870888999888763543246786411
Q ss_pred -CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCE
Q ss_conf -8249986188888888356320014567128999998327887399993315542311771155665540-60016813
Q gi|254780270|r 392 -RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSF 469 (820)
Q Consensus 392 -r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f 469 (820)
|||. +=+--...+.+-| .|--+.||-|.-| .|.|++|||+-.... ..||.| -|=.|..-
T Consensus 252 ~rPFr--~PHHsaS~~aLvG---GG~~p~PGeIsLA------H~GVLFLDElpef~~--------~iLe~LR~PLE~g~i 312 (490)
T COG0606 252 HRPFR--APHHSASLAALVG---GGGVPRPGEISLA------HNGVLFLDELPEFKR--------SILEALREPLENGKI 312 (490)
T ss_pred ECCCC--CCCCCCHHHHHHC---CCCCCCCCCEEEE------CCCEEEEECCCHHHH--------HHHHHHHCCCCCCCE
T ss_conf 07876--8874022889737---8998898735430------387788614421059--------999997374125817
Q ss_pred EE----EECCCCCCCCCEEEEEECC-----------------------CCC-CCHHHCCCEEE-EEECCCC
Q ss_conf 32----0103523644279999348-----------------------655-44131172479-9825878
Q gi|254780270|r 470 VD----HYLEVEYDLSDVMFIMTAN-----------------------TLN-IPLPLMDRMEI-IRIAGYT 511 (820)
Q Consensus 470 ~d----~y~~~~~dls~v~fi~tan-----------------------~~~-i~~~l~drme~-i~~~~y~ 511 (820)
+= +-+.+|- +..+|+++| +.+ +..||+||+.. ++++.-+
T Consensus 313 ~IsRa~~~v~ypa---~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~ 380 (490)
T COG0606 313 IISRAGSKVTYPA---RFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLS 380 (490)
T ss_pred EEEECCCEEEEEE---EEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCC
T ss_conf 9997587168721---2677522399976478887777578878877889874378775524110046789
No 157
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.49 E-value=4.7e-07 Score=72.23 Aligned_cols=172 Identities=23% Similarity=0.324 Sum_probs=107.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf 5998605656502799999977088-----24998618888888835632001456712899999832788739999331
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGR-----QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI 442 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r-----~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei 442 (820)
.+.++||+|+|||.|..+++....+ +...++. .++- .+|+.+.-..-+..++.-=+.-.++++|.|
T Consensus 36 pl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~------~~~~---~~~~~~l~~~~~~~f~~~l~~~d~l~iDDi 106 (219)
T pfam00308 36 PLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTS------EEFL---NDFVDALRDNKIEAFKKSYRNVDLLLIDDI 106 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEH------HHHH---HHHHHHHHCCCHHHHHHHHHHCCHHHHCCH
T ss_conf 2699889999888999999999998499982888439------9999---988999981888899999763233652236
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--CC-CCHHHCCCE---EEEEECCCCHHHHH
Q ss_conf 5542311771155665540600168133201035236442799993486--55-441311724---79982587868999
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--LN-IPLPLMDRM---EIIRIAGYTEEEKL 516 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~~-i~~~l~drm---e~i~~~~y~~~ek~ 516 (820)
|-+.... +-.-+|.++++--++.. -++++-++... +. ..+-|..|+ -++++...+.+++.
T Consensus 107 ~~l~~~~--~~ee~lf~l~N~~~~~~------------~~lllts~~~p~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~ 172 (219)
T pfam00308 107 QFLAGKE--KTQEEFFHTFNALHENN------------KQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRL 172 (219)
T ss_pred HHHCCCH--HHHHHHHHHHHHHHHCC------------CEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHH
T ss_conf 7656864--78999999999999729------------869997799810024532779999868756611699999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999860898998625781313228999999973177410234788879999898765
Q gi|254780270|r 517 QIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVT 574 (820)
Q Consensus 517 ~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~ 574 (820)
.|.+++. + ..++.++++++.+|++++.|- +|.|.-.|.+++++...
T Consensus 173 ~iL~~~a-----~-----~r~l~l~~~v~~yl~~r~~R~--~r~L~~~L~~L~~~~~~ 218 (219)
T pfam00308 173 AILRKKA-----E-----EENINIPNEVLNFIAQRITDN--VRELEGALNRLLAFASF 218 (219)
T ss_pred HHHHHHH-----H-----HCCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHCC
T ss_conf 9999999-----9-----849999999999999842798--99999999999985507
No 158
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.47 E-value=3.2e-06 Score=65.88 Aligned_cols=162 Identities=23% Similarity=0.308 Sum_probs=133.5
Q ss_pred CCCCEEEECCCCCEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCC
Q ss_conf 50000000001680799999997489972443256899999999999999998886299855742078147448888478
Q gi|254780270|r 612 GIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATPK 691 (820)
Q Consensus 612 G~v~GLa~t~~GG~~l~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~pK 691 (820)
++|..-|...+-|.+..||+...+|-..+.+.|....-.|||- .=||+-...-+.. |...-|-|++--..+||
T Consensus 4 a~v~s~al~Gi~~~~V~VEv~i~~GlP~f~iVGLpd~av~Esr----eRVrsAl~nsg~~---~P~~rItVNLaPAdl~K 76 (506)
T PRK09862 4 SIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEAR----DRVRSAIINSGYE---YPAKKITINLAPADLPK 76 (506)
T ss_pred EEEEEEEEECCEEEEEEEEEEECCCCCCEEEECCCHHHHHHHH----HHHHHHHHHCCCC---CCCCCEEEECCCCCCCC
T ss_conf 5676642307501699999982599862278378469999999----9999999838999---99880899707878888
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHC
Q ss_conf 88730689999999998368887--5610663685030250006568999999970996998036775507761488770
Q gi|254780270|r 692 DGPSAGIAMATAIVSIMTCIPVY--KNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKN 769 (820)
Q Consensus 692 DGPSAGi~i~tal~S~~~~~~v~--~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~ 769 (820)
.|++=-.+|+.+++.+--..+.. .+..+-||++|.|.|.||.|+---+++|+++| +++|+|.+|..+..-+ .
T Consensus 77 ~Gs~fDLpIA~~iL~a~~qi~~~~l~~~~~~GEL~LdG~lr~v~G~lp~~l~a~~~g-~~~ivp~~n~~ea~~v-----~ 150 (506)
T PRK09862 77 EGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSG-RKIIVAKDNEDEVGLI-----N 150 (506)
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHCCEEEEEECCCCCEEECCCCHHHHHHHHHHCC-CEEEECCCCHHHHCCC-----C
T ss_conf 876431999999999769998244302488851255860430653689999999759-9899534645665056-----9
Q ss_pred CCEEEECCCHHHHHHHH
Q ss_conf 97999819399988876
Q gi|254780270|r 770 GLEIIPVSFMGEVLKHA 786 (820)
Q Consensus 770 ~l~~~~v~~~~evl~~a 786 (820)
++++++|+++.||+.+-
T Consensus 151 ~~~v~~~~~L~e~~~~l 167 (506)
T PRK09862 151 GEGCLIADHLQAVCAFL 167 (506)
T ss_pred CCCEECCCCHHHHHHHH
T ss_conf 98287032599999986
No 159
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.43 E-value=1.5e-06 Score=68.38 Aligned_cols=164 Identities=21% Similarity=0.288 Sum_probs=98.8
Q ss_pred HHHHHHCHHHHHHHHHHHHH--HHHH---CC---------CCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 76652011689999999999--9984---24---------446735-998605656502799999977088249986188
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLA--VQMR---VI---------KNKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~la--v~~~---~~---------~~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
+--..||+++||+-|+=.|- +.+. ++ ..+|.| ++|+|-|||+|..|-+.+++.--|-.+. |=.|
T Consensus 449 iAPSI~~~~dvKkgillqLFGg~~k~~~~~~~~~~~~~~~~~RgdIniLl~GDPgtaKSQlL~yv~~iaPRgvyt-sGkg 527 (916)
T PTZ00111 449 FAPSIKARNNVKIGLLCQLFSCNANSSDNNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYT-SGKS 527 (916)
T ss_pred HCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE-CCCC
T ss_conf 086211522699999999848875456778776544444443454059995799601899999999728742674-5986
Q ss_pred CCCH---HHH--C--CCCCCC--CCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 8888---883--5--632001--456712899999832788739999331554231177115566554060016813320
Q gi|254780270|r 402 VYDE---ADI--R--GHRRTY--IGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDH 472 (820)
Q Consensus 402 ~~d~---~~i--~--gh~~ty--~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~ 472 (820)
..-. |-+ + +.++.+ -||+ +=.-+.|-.+||.|||+.+.| |+|.|+..- -
T Consensus 528 sSavGLTA~v~~~d~~tg~~~LEaGAL----------VLaD~GvccIDEFDKM~~~~r----s~lhEaMEQ--Q------ 585 (916)
T PTZ00111 528 SSSVGLTASIKFNESDNGRAMIQPGAV----------VLANGGVCCIDELDKCHNESR----LSLYEVMEQ--Q------ 585 (916)
T ss_pred CCCCCCEEEEEECCCCCCCEEEECCCE----------EECCCCEEEEEHHHCCCHHHH----HHHHHHHHH--H------
T ss_conf 542264689983268878689854808----------972798799622203685678----899998866--3------
Q ss_pred ECCCCCCCCCEEEEEECC------------------------CCCCCHHHCCCEEEEEECCCCHHHH------HHHHHHH
Q ss_conf 103523644279999348------------------------6554413117247998258786899------9899986
Q gi|254780270|r 473 YLEVEYDLSDVMFIMTAN------------------------TLNIPLPLMDRMEIIRIAGYTEEEK------LQIAKNH 522 (820)
Q Consensus 473 y~~~~~dls~v~fi~tan------------------------~~~i~~~l~drme~i~~~~y~~~ek------~~i~~~~ 522 (820)
.+-.+|.=.+||-| .+++|+||+.|..+|.+--=...|+ .+||+.|
T Consensus 586 ----tvSIAKAGI~~tLnARtSvLAaANP~~gry~~~~~v~enI~lpp~LLSRFDLIfl~lD~~de~~Dr~IA~hIa~~~ 661 (916)
T PTZ00111 586 ----TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDF 661 (916)
T ss_pred ----HHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf ----1235323504541203456553286556578786767645799403312204677505786566689999998766
Q ss_pred HHHHH
Q ss_conf 08989
Q gi|254780270|r 523 LVKKV 527 (820)
Q Consensus 523 l~p~~ 527 (820)
|.+..
T Consensus 662 L~~hl 666 (916)
T PTZ00111 662 LLPHM 666 (916)
T ss_pred HHHHC
T ss_conf 54310
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.6e-06 Score=66.66 Aligned_cols=147 Identities=17% Similarity=0.268 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC-CCHHHH-CC-CC-CCCCCCC
Q ss_conf 16899999999999984244467359986056565027999999770882499861888-888883-56-32-0014567
Q gi|254780270|r 344 LEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV-YDEADI-RG-HR-RTYIGSM 419 (820)
Q Consensus 344 l~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~-~d~~~i-~g-h~-~ty~ga~ 419 (820)
++++-+++... +..+.-+..+.|.||+|+||+++|..+|++|--.- -.-++. +...-+ .| |. .+++-..
T Consensus 9 q~~~~~~L~~~-----i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~--~~~~~~~~~~~~i~~g~HPD~~~i~~~ 81 (319)
T PRK08769 9 QQRAFDQTVAA-----LDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG--PDPALAQRTRQLIAAGTHPDLQLVSFI 81 (319)
T ss_pred CHHHHHHHHHH-----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 68999999999-----97699420687589998789999999999983799--797654338899966899896877534
Q ss_pred CH----H-----HHHHHHH-------C--CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CCCCCCEEEEECCCCCCC
Q ss_conf 12----8-----9999983-------2--78873999933155423117711556655406-001681332010352364
Q gi|254780270|r 420 PG----R-----IIQSLKR-------A--KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PAQNSSFVDHYLEVEYDL 480 (820)
Q Consensus 420 pg----~-----ii~~l~~-------~--~~~npv~~ldeidk~~~~~~gdp~~allevld-p~qn~~f~d~y~~~~~dl 480 (820)
|. + -|+.++. . ....=|+++|+.|+|+.. -++|||-.|. |.
T Consensus 82 ~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~----AaNalLK~LEEPp---------------- 141 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRS----ACNALLKTLEEPS---------------- 141 (319)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHH----HHHHHHHHHCCCC----------------
T ss_conf 44454311234869999999999613720279569998066752899----9999999822799----------------
Q ss_pred CCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 4279999348655-441311724799825878689998
Q gi|254780270|r 481 SDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQ 517 (820)
Q Consensus 481 s~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~ 517 (820)
.+++||.++++.+ +++.++.|--.|.++.-..+|-..
T Consensus 142 ~~~~~iL~~~~~~~ll~TI~SRCq~~~~~~p~~~~~~~ 179 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALA 179 (319)
T ss_pred CCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHH
T ss_conf 88489998699365824776485011189969999999
No 161
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.40 E-value=0.00011 Score=54.25 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=112.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHH-HC------CCCCCCC--CCCCHHHHHHHHH--C
Q ss_conf 67359986056565027999999770882---49986188888888-35------6320014--5671289999983--2
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEAD-IR------GHRRTYI--GSMPGRIIQSLKR--A 430 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~-i~------gh~~ty~--ga~pg~ii~~l~~--~ 430 (820)
+..+..++|+||+|||++.+..++.|+.. ++.+.-..+. ..+ ++ |...... .++-..|-+-|.. .
T Consensus 42 ~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~-~~~ll~~i~~~lg~~~~~~~~~~~~~~l~~~L~~~~~ 120 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVD-AEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 896599972998988999999998459345489997699999-9999999999859898898999999999999999996
Q ss_pred CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE--EECCCC----C--CCHHHCCCE
Q ss_conf 78873999933155423117711556655406001681332010352364427999--934865----5--441311724
Q gi|254780270|r 431 KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI--MTANTL----N--IPLPLMDRM 502 (820)
Q Consensus 431 ~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi--~tan~~----~--i~~~l~drm 502 (820)
.-..||+++||-..++.+ .||.|-- ..|+..|=.+.+.| +--+.+ . --++|.+|.
T Consensus 121 ~g~~~vliIDEAq~L~~~--------~Le~Lr~---------L~n~e~~~~~ll~iiL~GqpeL~~~L~~~~~~~l~qRI 183 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPE--------LLEELRM---------LSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRI 183 (269)
T ss_pred CCCCEEEEEECHHHCCHH--------HHHHHHH---------HHCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHCE
T ss_conf 699469997242219999--------9999999---------97013588870489995786799987274025455507
Q ss_pred E-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7-998258786899989998608989986257813132289999999731774102347888799998987654211785
Q gi|254780270|r 503 E-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 503 e-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
- ..++.+++.+|-. .|+--+ ++..|... ...|+++|+.. |..+|. ..=|.|+.+|..+-..-.....
T Consensus 184 ~~~~~L~pl~~eet~----~YI~~R-L~~AG~~~-~~~Ft~~A~~~-I~~~S~-----G~PR~IN~Lc~~aLl~a~~~~~ 251 (269)
T TIGR03015 184 IASCHLGPLDREETR----EYIEHR-LERAGNRD-APVFSEGAFDA-IHRFSR-----GIPRLINILCDRLLLSAFLEEK 251 (269)
T ss_pred EEEEEECCCCHHHHH----HHHHHH-HHHCCCCC-CCCCCHHHHHH-HHHHCC-----CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 679984799989999----999999-98669999-99859999999-999869-----9008999999999999999488
Q ss_pred CEECCCHHHHHHHH
Q ss_conf 20127967867530
Q gi|254780270|r 582 TTVSINENNLQDYL 595 (820)
Q Consensus 582 ~~~~i~~~~l~~~l 595 (820)
-.|+.+.+.+.+
T Consensus 252 --~~I~~~~v~~~~ 263 (269)
T TIGR03015 252 --REIGGEEVREVI 263 (269)
T ss_pred --CCCCHHHHHHHH
T ss_conf --867999999999
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.39 E-value=9.5e-06 Score=62.34 Aligned_cols=174 Identities=25% Similarity=0.411 Sum_probs=108.0
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
Q ss_conf 20116899999999999984244467359986056565027999999770----------88249986188888888356
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRG 410 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~~~i~g 410 (820)
..|=++==+|+++.|+=+.-|+ -||+|.||||||+|+..+|... |+..+.+.+|.+--.+
T Consensus 181 vIGRd~EI~r~i~IL~RR~KNN------piLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGt---- 250 (823)
T CHL00095 181 VIGRDKEIERVIQILGRRTKNN------PILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGT---- 250 (823)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC------CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCC----
T ss_conf 7595699999999997732488------502379998799999999997608899868759936884288775334----
Q ss_pred CCCCCCCCCCHH---HHHHHHHCCCCCEEEEEECHHHH-HHHC-CC--CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 320014567128---99999832788739999331554-2311-77--11556655406001681332010352364427
Q gi|254780270|r 411 HRRTYIGSMPGR---IIQSLKRAKRSNPLLLLDEIDKM-GSDL-RG--DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 411 h~~ty~ga~pg~---ii~~l~~~~~~npv~~ldeidk~-~~~~-~g--dp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
.|-|..--| |+..+++. .|-+.++|||--+ |.+. .| |.++-|--.|- .-.+ ++
T Consensus 251 ---kyRGeFEeRlk~il~ei~~~--~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLa---rGel------------~~ 310 (823)
T CHL00095 251 ---KYRGEFEERIKKIMDEIKKA--NNIILVIDEIHTLIGAGAAEGAIDAANILKPALA---RGKL------------QC 310 (823)
T ss_pred ---CCCHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHH---CCCC------------EE
T ss_conf ---22267999999999999857--9869997351653288976664317887657864---8986------------69
Q ss_pred EEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99993486----55441311724799825878689998999860898998625781313228999999973
Q gi|254780270|r 484 MFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR 550 (820)
Q Consensus 484 ~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~ 550 (820)
+--+|.+. ..-.++|--|++.|.+.--+.+|-+.|-+. +.++.-+-|+ |.|+|+||...+.
T Consensus 311 IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~g-l~~~yE~~H~-----V~i~d~Ai~aav~ 375 (823)
T CHL00095 311 IGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLG-LRDRYEKHHN-----LSISDKALEAAAK 375 (823)
T ss_pred EEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHHCC-----CCCCHHHHHHHHH
T ss_conf 970788999998530588996268410289987999999999-9999987508-----8504789999999
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.39 E-value=1.1e-05 Score=61.88 Aligned_cols=178 Identities=22% Similarity=0.368 Sum_probs=113.6
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEECCCCCCHHHHC
Q ss_conf 5201168999999999999842444673599860565650279999997708----------824998618888888835
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG----------RQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~----------r~f~~islgg~~d~~~i~ 409 (820)
-..|=++-=+|+++.|+=+. + +-| ||+|.||||||.|+..+|...- ...+.+.+|.+ +-
T Consensus 179 pvIGRd~EI~r~i~IL~RR~-K---NNp--iLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L-----~A 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT-K---NNP--VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL-----VA 247 (857)
T ss_pred CCCCCHHHHHHHHHHHHCCC-C---CCC--EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHH-----HH
T ss_conf 88582999999999970257-8---997--5878999889999999999998389997881690247338878-----61
Q ss_pred CCCCCCCCCCCHHHHHHHHHC-CCC-CEEEEEECHHHH---HHHC-CCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 632001456712899999832-788-739999331554---2311-7711556655406001681332010352364427
Q gi|254780270|r 410 GHRRTYIGSMPGRIIQSLKRA-KRS-NPLLLLDEIDKM---GSDL-RGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 410 gh~~ty~ga~pg~ii~~l~~~-~~~-npv~~ldeidk~---~~~~-~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
|- .|-|-.-.|+-.-|... +.. |.+.++|||--+ |++- ..|.++-|--.|- .-.+ ++
T Consensus 248 Ga--kyRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLa---RGel------------r~ 310 (857)
T PRK10865 248 GA--KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA---RGEL------------HC 310 (857)
T ss_pred CC--CCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHH---CCCC------------EE
T ss_conf 47--6521179999999999984789869997343543368877775347888678873---7985------------49
Q ss_pred EEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 99993486----554413117247998258786899989998608989986257813132289999999731
Q gi|254780270|r 484 MFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 484 ~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
+--+|... ..-.++|--|++.|.+.--|.++-+.|-+. +.++--+-|| |.|+|+||...+.-
T Consensus 311 IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrg-l~~~yE~hH~-----V~itdeAl~aAV~L 376 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRG-LKERYELHHH-----VQITDPAIVAAATL 376 (857)
T ss_pred EEECCHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHCCC-----CEECHHHHHHHHHH
T ss_conf 994589999987134588998537100689987999999998-8889987379-----15879999999998
No 164
>KOG0726 consensus
Probab=98.38 E-value=1.7e-07 Score=75.55 Aligned_cols=168 Identities=30% Similarity=0.485 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHH---------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 89987766520116899999999999984---------244467359986056565027999999770882499861888
Q gi|254780270|r 332 FAIRILDQDHFGLEKVKERIIEYLAVQMR---------VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 332 ~a~~iLd~~hyGl~~vK~rile~lav~~~---------~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
+|-.---.|.=||+.--+-|-|-+-.--- .+-.||-|| +|+||+|||-|||.+|+...--|.|+-
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIl--yG~PGTGKTLLAKAVANqTSATFlRvv---- 251 (440)
T KOG0726 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVIL--YGEPGTGKTLLAKAVANQTSATFLRVV---- 251 (440)
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEE--ECCCCCCHHHHHHHHHCCCCHHHHHHH----
T ss_conf 48501113442578999999986338889878999728899970588--679997536888877245521245565----
Q ss_pred CCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH-C----CC--CHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 888883563200145671289999983278873-9999331554231-1----77--11556655406001681332010
Q gi|254780270|r 403 YDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD-L----RG--DPSAALLEVLDPAQNSSFVDHYL 474 (820)
Q Consensus 403 ~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~-~----~g--dp~~allevldp~qn~~f~d~y~ 474 (820)
.+|+. .-|.|--|-..-|-.+-|+..-| ++++||||-+|.- | .| ...-.|||+|. |-..|-+.
T Consensus 252 --GseLi---QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN--QldGFdsr-- 322 (440)
T KOG0726 252 --GSELI---QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN--QLDGFDSR-- 322 (440)
T ss_pred --HHHHH---HHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHH--HCCCCCCC--
T ss_conf --08999---9873655199999998887529826986400110452134788507899999999987--42686656--
Q ss_pred CCCCCCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3523644279999348655-44131-----172479982587868999899986
Q gi|254780270|r 475 EVEYDLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNH 522 (820)
Q Consensus 475 ~~~~dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~ 522 (820)
.+|-.|..-|-++ ..++| .||- |+++---..-|..|+.-|
T Consensus 323 ------gDvKvimATnrie~LDPaLiRPGrIDrK--Ief~~pDe~TkkkIf~IH 368 (440)
T KOG0726 323 ------GDVKVIMATNRIETLDPALIRPGRIDRK--IEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred ------CCEEEEEECCCCCCCCHHHCCCCCCCCC--CCCCCCCHHHHCEEEEEE
T ss_conf ------7758997416534467755278754311--125797556323156875
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.36 E-value=1.2e-05 Score=61.46 Aligned_cols=180 Identities=22% Similarity=0.387 Sum_probs=112.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHC
Q ss_conf 520116899999999999984244467359986056565027999999770----------8824998618888888835
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~~~i~ 409 (820)
-..|-++-=+|+++.|+=+. +++ | ||+|.||||||.|+..+|.-. |...+.+.+|.+--.+
T Consensus 174 pviGRd~Ei~r~i~IL~Rr~-KNN---p--iLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGt--- 244 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT-KNN---P--VLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA--- 244 (852)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCC---C--CEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCC---
T ss_conf 77383699999999998732-489---7--21279998799999999999866999978851851275288775215---
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCC-C-CEEEEEECHHHH-HHHC-CC--CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 63200145671289999983278-8-739999331554-2311-77--11556655406001681332010352364427
Q gi|254780270|r 410 GHRRTYIGSMPGRIIQSLKRAKR-S-NPLLLLDEIDKM-GSDL-RG--DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 410 gh~~ty~ga~pg~ii~~l~~~~~-~-npv~~ldeidk~-~~~~-~g--dp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
.|-|-.-.|+-.-+..... . |-++++|||--+ |.+. .| |.++ +|.|.--.. .+ ++
T Consensus 245 ----kyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaN----lLKPaLarG--------el---r~ 305 (852)
T TIGR03346 245 ----KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGN----MLKPALARG--------EL---HC 305 (852)
T ss_pred ----CCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHH----HHHHHHHCC--------CC---EE
T ss_conf ----300789999999999998589987999612555326887666410677----743787479--------85---59
Q ss_pred EEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99993486----55441311724799825878689998999860898998625781313228999999973177
Q gi|254780270|r 484 MFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFT 553 (820)
Q Consensus 484 ~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt 553 (820)
+-.+|... ..-.++|--|++.|.+.--+.++-+.|-+. +.|+--.-| .|.++|+||...++-..
T Consensus 306 IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~g-l~~~yE~hH-----~V~i~d~Ai~aav~LS~ 373 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRG-LKERYEVHH-----GVRITDPAIVAAATLSH 373 (852)
T ss_pred EEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHCC-----CCEECHHHHHHHHHHHC
T ss_conf 982789999988322688997377120479986899999997-699997627-----92673999999999713
No 166
>KOG0735 consensus
Probab=98.34 E-value=1.2e-05 Score=61.71 Aligned_cols=205 Identities=28% Similarity=0.412 Sum_probs=120.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHH-------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 6520116899999999999984-------244467359986056565027999999770882499861888888883563
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMR-------VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~-------~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
+|.-||.++|+-+.|.+---.. .+-....-++|+||||+|||-||..||..-+-.| ||+-|- |+-
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~f--isvKGP----ElL-- 738 (952)
T KOG0735 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRF--ISVKGP----ELL-- 738 (952)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEE--EEECCH----HHH--
T ss_conf 003358999999999985541036788608866655458877999857888888885378059--982588----999--
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCC-EEEEEECHHHHHH----HCCC--C-HHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 20014567128999998327887-3999933155423----1177--1-1556655406001681332010352364427
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRAKRSN-PLLLLDEIDKMGS----DLRG--D-PSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~~~~n-pv~~ldeidk~~~----~~~g--d-p~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
--|+||----+-.-..+|...- ++.++||.|-+.. |..| | ..+-||.-||- +.- |-.|
T Consensus 739 -~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG------------~Eg-l~GV 804 (952)
T KOG0735 739 -SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG------------AEG-LDGV 804 (952)
T ss_pred -HHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC------------CCC-CCEE
T ss_conf -98745007889999998651497489712102437666877777429999999876036------------334-4538
Q ss_pred EEEEECCCC-C-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 999934865-5-44131-----1724799825878689998999860898998625781313228999999973177410
Q gi|254780270|r 484 MFIMTANTL-N-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEA 556 (820)
Q Consensus 484 ~fi~tan~~-~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~Ea 556 (820)
||..|-+- + |+++| +||. +.-+--+..|.++|.+. +...-+.+..+.+ +-+...-..||
T Consensus 805 -~i~aaTsRpdliDpALLRpGRlD~~--v~C~~P~~~eRl~il~~------ls~s~~~~~~vdl--~~~a~~T~g~t--- 870 (952)
T KOG0735 805 -YILAATSRPDLIDPALLRPGRLDKL--VYCPLPDEPERLEILQV------LSNSLLKDTDVDL--ECLAQKTDGFT--- 870 (952)
T ss_pred -EEEEECCCCCCCCHHHCCCCCCCEE--EECCCCCCHHHHHHHHH------HHHCCCCCCCCCH--HHHHHHCCCCC---
T ss_conf -9997337834367766288765401--56799892899999999------8534577521016--88765217873---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 234788879999898765421178
Q gi|254780270|r 557 GVRSFERALMKIARKAVTKIVKNS 580 (820)
Q Consensus 557 GvR~l~r~i~~i~r~~~~~~~~~~ 580 (820)
| -+|+-.+..-.-+++.+++...
T Consensus 871 g-ADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735 871 G-ADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6-6599898777999999999863
No 167
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=3e-06 Score=66.09 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=80.0
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH--HHCCCCCCCCC--CCCH-----HHHHHHHHC
Q ss_conf 42444673599860565650279999997708824998618888888--83563200145--6712-----899999832
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA--DIRGHRRTYIG--SMPG-----RIIQSLKRA 430 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~--~i~gh~~ty~g--a~pg-----~ii~~l~~~ 430 (820)
.+.+.-+.-++|.||+|+||+++|..+|++|--. +.-.... .=+-|--.|.- .--| ..++.+++.
T Consensus 13 i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~------~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l~~~ 86 (290)
T PRK05917 13 VRDQKVPSAILLHGQDLSNLSQYAYELASLILLE------SSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAIKKQ 86 (290)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 9839966068768999865999999999998578------9961688987468998599615777887867899999999
Q ss_pred ------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE
Q ss_conf ------788739999331554231177115566554060016813320103523644279999348655-4413117247
Q gi|254780270|r 431 ------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME 503 (820)
Q Consensus 431 ------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme 503 (820)
....=|+++|+.|+|+. .-++|||-.|. -|- ++++||.++++.+ +++.++.|--
T Consensus 87 i~~~p~~g~~KV~IId~Ad~Mn~----~AaNALLKtLE-------------EPP--~~tvfILit~~~~~lLpTI~SRCQ 147 (290)
T PRK05917 87 IWIHPYEANYKIYIIHEADRMTL----DAISAFLKVLE-------------DPP--KHSVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred HCCCCCCCCCEEEEECCHHHHCH----HHHHHHHHHHC-------------CCC--CCEEEEEEECCHHHCCHHHHHCCC
T ss_conf 64186468826999756776389----99999999734-------------798--785999986992548237763351
Q ss_pred EEEECC
Q ss_conf 998258
Q gi|254780270|r 504 IIRIAG 509 (820)
Q Consensus 504 ~i~~~~ 509 (820)
.|+++.
T Consensus 148 ~I~i~~ 153 (290)
T PRK05917 148 SIHIPG 153 (290)
T ss_pred EEECCC
T ss_conf 167776
No 168
>PRK04132 replication factor C small subunit; Provisional
Probab=98.27 E-value=1.1e-06 Score=69.30 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 44279999348655-44131172479982587868999899986089899862578131322899999997317741023
Q gi|254780270|r 480 LSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558 (820)
Q Consensus 480 ls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv 558 (820)
.+++.||.++|+.+ |-+|+..|.-+...++-+.++-.. ++ +.. .+.+.+.+++++++.|+. +-+.-+
T Consensus 673 ~~~~~~~~SCNYsSKIIePIQSRCavFRF~PL~~e~v~~--------RL-~~I-a~~Egv~itedGleAI~~--~aeGDM 740 (863)
T PRK04132 673 IANGFVSHNCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK--------RL-RYI-AENEGLELTEEGLQAILY--VAEGDM 740 (863)
T ss_pred HCCCEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHH--------HH-HHH-HHHCCCCCCHHHHHHHHH--HCCCCH
T ss_conf 205617986676040741665562478836899999999--------99-999-997499767789999999--756748
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCC
Q ss_conf 478887999989876542117852012796786753052000
Q gi|254780270|r 559 RSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600 (820)
Q Consensus 559 R~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~ 600 (820)
|+ .|+.+-...+ ..-.||.+++.+..|.|+-
T Consensus 741 Rk---AIN~LQsaa~--------~~~~Vt~d~Vy~v~~~p~P 771 (863)
T PRK04132 741 RR---AINVLQAAAA--------LDTKITDENVFKVASRARP 771 (863)
T ss_pred HH---HHHHHHHHHH--------CCCCCCHHHHHHHCCCCCH
T ss_conf 99---9999999986--------1698788899997089998
No 169
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.24 E-value=2.1e-05 Score=59.79 Aligned_cols=179 Identities=20% Similarity=0.350 Sum_probs=111.3
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCH
Q ss_conf 7766520116899999999999984244467359986056565027999999770----------882499861888888
Q gi|254780270|r 336 ILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDE 405 (820)
Q Consensus 336 iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~ 405 (820)
.|| -..|=++-=+|+++.|+=+.-|+ | ||+|.||||||.|+..+|.-. |...+.+.||.+--.
T Consensus 185 klD-PvIGRd~EI~r~iqIL~Rr~KNN----P--iLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAG 257 (852)
T TIGR03345 185 KID-PVLGRDDEIRQMIDILLRRRQNN----P--ILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG 257 (852)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHCCCC----C--EEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHC
T ss_conf 999-88694999999999998624799----7--4657999879999999999997699986774385678678888640
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHC-CCCCEE-EEEECHHHH-HH--HCC-CCHHHHHHHHCCCCCC-CCEEEEECCCCC
Q ss_conf 8835632001456712899999832-788739-999331554-23--117-7115566554060016-813320103523
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRA-KRSNPL-LLLDEIDKM-GS--DLR-GDPSAALLEVLDPAQN-SSFVDHYLEVEY 478 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~-~~~npv-~~ldeidk~-~~--~~~-gdp~~allevldp~qn-~~f~d~y~~~~~ 478 (820)
+ .|-|..--|+-..|... ...|++ .++|||--+ |. +-. +|.++- |-|.-- -.+
T Consensus 258 t-------kyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNi----LKPaLarGel--------- 317 (852)
T TIGR03345 258 A-------SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANL----LKPALARGEL--------- 317 (852)
T ss_pred C-------CCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHH----HHHHHHCCCC---------
T ss_conf 3-------5763599999999999984899769996348775289988886227887----5178737873---------
Q ss_pred CCCCEEEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 6442799993486----55441311724799825878689998999860898998625781313228999999973
Q gi|254780270|r 479 DLSDVMFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR 550 (820)
Q Consensus 479 dls~v~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~ 550 (820)
+++--+|... ..-+++|--|++.|.+.--|.+|-+.|-+. |-++--.-| .|.|+|+||...+.
T Consensus 318 ---r~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~g-lk~~yE~hH-----~V~i~d~Ai~aAv~ 384 (852)
T TIGR03345 318 ---RTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG-LAPVLEKHH-----GVLILDEAVVAAVE 384 (852)
T ss_pred ---EEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHCC-----CEEEEHHHHHHHHH
T ss_conf ---49983578999888642688996247552799987999999998-799985547-----96870899999999
No 170
>PRK09087 hypothetical protein; Validated
Probab=98.22 E-value=0.00012 Score=54.10 Aligned_cols=173 Identities=17% Similarity=0.278 Sum_probs=104.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 44467359986056565027999999770882499861888888883563200145671289999983278873999933
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
++-..+.++|+||+|.|||.|+...++.-+-.+. . .+.+ ...+... ..+..+++|.
T Consensus 40 ~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~--~------~~~~-----------~~~~~~~-----~~~~~~~idd 95 (226)
T PRK09087 40 PNWPSPVVVLAGPVGSGKTHLASIWREKADALLV--H------PNEI-----------GSDAANA-----AAERPVLIED 95 (226)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE--C------HHHC-----------CHHHHHH-----HCCCCEEEEC
T ss_conf 2677775899899999886999999998099683--6------6874-----------7466765-----3279889974
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCCHH-HCCC---EEEEEECCCCHH
Q ss_conf 15542311771155665540600168133201035236442799993486----554413-1172---479982587868
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIPLP-LMDR---MEIIRIAGYTEE 513 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~~~-l~dr---me~i~~~~y~~~ 513 (820)
+|+.+-+ .-+|.++..--+. ++.-.+.|++. +++--| |+.| +-++++..-..+
T Consensus 96 ~d~~~~d-----Ee~LFhl~N~~~~--------------~~~~LLlts~~~p~~l~~~L~DL~SRL~~~~~~~I~~pdD~ 156 (226)
T PRK09087 96 IDAGGFD-----ETGLFHLINSVRQ--------------AGTSLLMTSRLWPSAWNVKLPDLKSRLKAATVVEIGEPDDA 156 (226)
T ss_pred CCCCCCC-----HHHHHHHHHHHHH--------------CCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEEECCCCHH
T ss_conf 8777747-----8999999999985--------------39879998898956667624689999857857983599989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHH
Q ss_conf 99989998608989986257813132289999999731774102347888799998987654211785201279678675
Q gi|254780270|r 514 EKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQD 593 (820)
Q Consensus 514 ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~ 593 (820)
.+..+..++ +..-++.++++++.||+.+..|. ...+...+.++=+..-. .+-.||...+.+
T Consensus 157 ll~~~L~k~----------~~~r~l~l~~~v~~yll~r~~Rs--~~~l~~~l~~LD~~SL~-------~kr~ITiplike 217 (226)
T PRK09087 157 LLSGVIFKL----------FADRQLYVEPHVVYYLVSRMERS--LFAAQTIVERLDRLALE-------RKSRITRALAAE 217 (226)
T ss_pred HHHHHHHHH----------HHHCCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH-------CCCCCCHHHHHH
T ss_conf 999999999----------87576578888999999845889--99999999999999998-------189998999999
Q ss_pred HHC
Q ss_conf 305
Q gi|254780270|r 594 YLG 596 (820)
Q Consensus 594 ~lg 596 (820)
.|.
T Consensus 218 vL~ 220 (226)
T PRK09087 218 VLN 220 (226)
T ss_pred HHH
T ss_conf 998
No 171
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=4.7e-05 Score=57.07 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=81.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCC--CC-CCCCCCCC-H---------HHHHHHHHC
Q ss_conf 735998605656502799999977088249--986188888888356--32-00145671-2---------899999832
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYV--RMSLGGVYDEADIRG--HR-RTYIGSMP-G---------RIIQSLKRA 430 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f~--~islgg~~d~~~i~g--h~-~ty~ga~p-g---------~ii~~l~~~ 430 (820)
+-.+.|+||+|+||+++|+..|++|.=.-- --+.|-.+.---+.. |- ..++-... | .+++.+...
T Consensus 22 ~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~~~~ 101 (328)
T PRK05707 22 AHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFVVQT 101 (328)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 20464479998679999999999984899999899988889999875899987998426667769799999999998317
Q ss_pred --CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEE
Q ss_conf --788739999331554231177115566554060016813320103523644279999348655-44131172479982
Q gi|254780270|r 431 --KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRI 507 (820)
Q Consensus 431 --~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~ 507 (820)
...+=|+++|+.|+|+.. -++|||-.|. -|= .+++||..+++.+ +++.++.|--.+.+
T Consensus 102 ~~~g~~KV~iI~~Ae~m~~~----AaNALLKtLE-------------EPp--~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 162 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRN----AANALLKSLE-------------EPS--GQTVLLLISHQPSRLLPTIKSRCQQLAC 162 (328)
T ss_pred CCCCCCEEEEEEHHHHHCHH----HHHHHHHHHH-------------CCC--CCEEEEEEECCHHHCHHHHHHCCEEEEC
T ss_conf 66789579995028773899----9999999850-------------789--8759998609934482588741413348
Q ss_pred CCCCHHHHHH
Q ss_conf 5878689998
Q gi|254780270|r 508 AGYTEEEKLQ 517 (820)
Q Consensus 508 ~~y~~~ek~~ 517 (820)
+.-..++-..
T Consensus 163 ~~p~~e~~~~ 172 (328)
T PRK05707 163 PLPSNEPSLQ 172 (328)
T ss_pred CCCCHHHHHH
T ss_conf 9989999999
No 172
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.22 E-value=1.7e-05 Score=60.52 Aligned_cols=173 Identities=24% Similarity=0.381 Sum_probs=118.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCC-CCC---CCCHHHHHHHHHCCCC
Q ss_conf 46735998605656502799999977088---249986188888---8883563200-145---6712899999832788
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRT-YIG---SMPGRIIQSLKRAKRS 433 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~t-y~g---a~pg~ii~~l~~~~~~ 433 (820)
+..++ ++.|--||||--+|+.|.+--.| ||+.+.++-+-. |||+=||.+- +-| .-+||+=- ..
T Consensus 245 Sd~tV-Li~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFEl------Ad 317 (550)
T COG3604 245 SDSTV-LIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFEL------AD 317 (550)
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCEEE------CC
T ss_conf 89807-984588853899999998737555798666312225378888887453322333510146763565------57
Q ss_pred CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEE----EEECCCCCCCCCEEEEEECC-CC----------------
Q ss_conf 7399993315542311771155665540600168133----20103523644279999348-65----------------
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFV----DHYLEVEYDLSDVMFIMTAN-TL---------------- 492 (820)
Q Consensus 434 npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~----d~y~~~~~dls~v~fi~tan-~~---------------- 492 (820)
+.-.+||||.-|.-.++ +.||-|| |+..|. |+- +.+ +|=.||--| |+
T Consensus 318 GGTLFLDEIGelPL~lQ----aKLLRvL---QegEieRvG~~r~--ikV---DVRiIAATNRDL~~~V~~G~FRaDLYyR 385 (550)
T COG3604 318 GGTLFLDEIGELPLALQ----AKLLRVL---QEGEIERVGGDRT--IKV---DVRVIAATNRDLEEMVRDGEFRADLYYR 385 (550)
T ss_pred CCEEECHHHCCCCHHHH----HHHHHHH---HHCCEEECCCCCE--EEE---EEEEEECCCHHHHHHHHCCCCHHHHHHC
T ss_conf 97576022036787788----9999998---6365253479963--677---7899821353099998749515545321
Q ss_pred ----C-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ----5-44131172479982587868999899986089899862578131322899999997317741023478887999
Q gi|254780270|r 493 ----N-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMK 567 (820)
Q Consensus 493 ----~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~ 567 (820)
. .-+||+.|= |-+-.--.|.+-+..+++|. ..+.|+.+|++. +.+|..-.-||+||-.+..
T Consensus 386 LsV~Pl~lPPLRER~-----------~DIplLA~~Fle~~~~~~gr--~~l~ls~~Al~~-L~~y~wPGNVRELen~veR 451 (550)
T COG3604 386 LSVFPLELPPLRERP-----------EDIPLLAGYFLEKFRRRLGR--AILSLSAEALEL-LSSYEWPGNVRELENVVER 451 (550)
T ss_pred CCCCCCCCCCCCCCC-----------CCHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHH-HHCCCCCCCHHHHHHHHHH
T ss_conf 020013789834588-----------66799999999999886397--640339899999-9739999719999989999
Q ss_pred HH
Q ss_conf 98
Q gi|254780270|r 568 IA 569 (820)
Q Consensus 568 i~ 569 (820)
-+
T Consensus 452 av 453 (550)
T COG3604 452 AV 453 (550)
T ss_pred HH
T ss_conf 99
No 173
>KOG0741 consensus
Probab=98.21 E-value=2e-05 Score=59.91 Aligned_cols=164 Identities=27% Similarity=0.433 Sum_probs=102.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC---------CCC
Q ss_conf 44673599860565650279999997708824998618888888835632001456712899999832---------788
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA---------KRS 433 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~---------~~~ 433 (820)
.+|| |+|+||||+|||-+|+-|.+-||-+=-+|-= .-||-- -|||.----|=.-...| .+.
T Consensus 255 HVKG--iLLyGPPGTGKTLiARqIGkMLNArePKIVN-----GPeIL~---KYVGeSE~NvR~LFaDAEeE~r~~g~~Sg 324 (744)
T KOG0741 255 HVKG--ILLYGPPGTGKTLIARQIGKMLNAREPKIVN-----GPEILN---KYVGESEENVRKLFADAEEEQRRLGANSG 324 (744)
T ss_pred CEEE--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1235--7887799987018999987874579986347-----578898---76063078899998757999984376677
Q ss_pred CEEEEEECHHHHHHH--C-CC-----C-HHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHC--CC
Q ss_conf 739999331554231--1-77-----1-15566554060016813320103523644279999348655-441311--72
Q gi|254780270|r 434 NPLLLLDEIDKMGSD--L-RG-----D-PSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLM--DR 501 (820)
Q Consensus 434 npv~~ldeidk~~~~--~-~g-----d-p~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~--dr 501 (820)
=-+|++||||-+-.. . .| | ..+-||--.|- | =-|.++|.|---|-.+ |+.+|+ -|
T Consensus 325 LHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG------------V-eqLNNILVIGMTNR~DlIDEALLRPGR 391 (744)
T KOG0741 325 LHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG------------V-EQLNNILVIGMTNRKDLIDEALLRPGR 391 (744)
T ss_pred CEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC------------H-HHHHCEEEEECCCCHHHHHHHHCCCCC
T ss_conf 259996346799974488789886318999999985322------------8-766167899404736667887558871
Q ss_pred EEE-EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 479-9825878689998999860898998625781313228999999973177
Q gi|254780270|r 502 MEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFT 553 (820)
Q Consensus 502 me~-i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt 553 (820)
+|| .|++=--.+-.++|.+-| .+-+++|++-..+|.+.+ |..+-++|+
T Consensus 392 lEVqmEIsLPDE~gRlQIl~IH--T~rMre~~~l~~dVdl~e--lA~lTKNfS 440 (744)
T KOG0741 392 LEVQMEISLPDEKGRLQILKIH--TKRMRENNKLSADVDLKE--LAALTKNFS 440 (744)
T ss_pred EEEEEEEECCCCCCCEEEEEHH--HHHHHHCCCCCCCCCHHH--HHHHHCCCC
T ss_conf 6999998468876727888714--455665178777769899--999855786
No 174
>KOG0732 consensus
Probab=98.21 E-value=1.1e-05 Score=61.83 Aligned_cols=356 Identities=20% Similarity=0.251 Sum_probs=174.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCC-------CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
Q ss_conf 52011689999999999998424446-------73599860565650279999997708824998618888888835632
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNK-------GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~-------g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~ 412 (820)
+.=||+.++...=|+...--+-|... .--.+|.||||+|||+.|+..|.+.-+...+||.= +++.|+.-+
T Consensus 266 ~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisff-mrkgaD~ls-- 342 (1080)
T KOG0732 266 SVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFF-MRKGADCLS-- 342 (1080)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHH-HHCCCHHHC--
T ss_conf 33457888999999887676405676412668986323028998725688886665405411020244-314844332--
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHH---H----CCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 00145671289999983278873-999933155423---1----177115566554060016813320103523644279
Q gi|254780270|r 413 RTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGS---D----LRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVM 484 (820)
Q Consensus 413 ~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~---~----~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~ 484 (820)
-|||----..-.....|.-+-| +|++||||-+.. + .+--..|.||-++|--- - -++|.
T Consensus 343 -kwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld------------s-RgqVv 408 (1080)
T KOG0732 343 -KWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD------------S-RGQVV 408 (1080)
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC------------C-CCCEE
T ss_conf -544757788998898874448517730555664656536677744567777887604777------------7-78658
Q ss_pred EEEECCCCC-CCHHHC-----CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 999348655-441311-----72479982587868999899986089899862578131322899999997317741023
Q gi|254780270|r 485 FIMTANTLN-IPLPLM-----DRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558 (820)
Q Consensus 485 fi~tan~~~-i~~~l~-----drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv 558 (820)
-|..-|..+ +.++|+ ||-.-.-+++--. ..+ ++.-+..+.. =.++...+..+-+. |-.-|=
T Consensus 409 vigATnRpda~dpaLRRPgrfdref~f~lp~~~a--r~~---------Il~Ihtrkw~-~~i~~~l~~~la~~-t~gy~g 475 (1080)
T KOG0732 409 VIGATNRPDAIDPALRRPGRFDREFYFPLPDVDA--RAK---------ILDIHTRKWE-PPISRELLLWLAEE-TSGYGG 475 (1080)
T ss_pred EECCCCCCCCCCHHHCCCCCCCEEEEEECCCHHH--HHH---------HHHHHCCCCC-CCCCHHHHHHHHHH-CCCCCH
T ss_conf 9715678332465442886665257503786678--889---------9987515777-88777899999886-234005
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC-------CEECCCHHHH----HHHHCC-CCC-----CCCCHHCCCCC-CCCCEEEEC
Q ss_conf 47888799998987654211785-------2012796786----753052-000-----33200022336-500000000
Q gi|254780270|r 559 RSFERALMKIARKAVTKIVKNSD-------TTVSINENNL----QDYLGV-PRY-----KYGKIEGEDQV-GIVTGLAWT 620 (820)
Q Consensus 559 R~l~r~i~~i~r~~~~~~~~~~~-------~~~~i~~~~l----~~~lg~-~~~-----~~~~~~~~~~~-G~v~GLa~t 620 (820)
..|..+|-.+|+..+...- ....+....+ .+++-. ++. ....+...|.. ++.- |.
T Consensus 476 ----aDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~-ll-- 548 (1080)
T KOG0732 476 ----ADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKP-LL-- 548 (1080)
T ss_pred ----HHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEC-CC--
T ss_conf ----78998888875543045658142224321345011100267666543003777775556778888843010-31--
Q ss_pred CCCCEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHH
Q ss_conf 01680799999997489972443256899999999999999998886299855742078147448888478887306899
Q gi|254780270|r 621 EVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAM 700 (820)
Q Consensus 621 ~~GG~~l~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i 700 (820)
.+.-....-+|-+ .+--+|......-+-++|++...+.+ ......-+-|. |. ++-|-..+
T Consensus 549 -------~~~~~~~~iq~~~----~va~~~~k~~e~~~~~v~~~e~~~~i--~lic~~~lli~-~~---~~~g~~~l--- 608 (1080)
T KOG0732 549 -------PFQDALEDIQGLM----DVASSMAKIEEHLKLLVRSFESNFAI--RLICRPRLLIN-GG---KGSGQDYL--- 608 (1080)
T ss_pred -------CHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHCCCCH--HHHCCCHHHCC-CC---CCCCCCCC---
T ss_conf -------1288888752112----37764011777767778754111012--34327087607-98---66565755---
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECC
Q ss_conf 99999998368887561066368503025000656899999997099699803
Q gi|254780270|r 701 ATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIP 753 (820)
Q Consensus 701 ~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP 753 (820)
.-||+..+-+.+| +..+|+-.++..|.=-+.++|..=.+-|++-+=--|+||
T Consensus 609 g~aIlh~~~~~~v-~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip 660 (1080)
T KOG0732 609 GPAILHRLEGLPV-QSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIP 660 (1080)
T ss_pred CHHHHHHHHCCCH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 0899998851405-777788987556652478999999998731588334235
No 175
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=8.2e-06 Score=62.83 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=107.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH
Q ss_conf 59986056565027999999770882499861888888883563200145671289999983278873999933155423
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS 447 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~ 447 (820)
=|-++|++|.|||.|..+|+..+..+-.++-. +..|.+.. -|+.|+-..=++..++-=-.--|+|+|.|.-++.
T Consensus 143 PLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Y--vtae~F~~----~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQfl~g 216 (455)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVSALRESGGKILY--VSSELFTE----HLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSG 216 (455)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE--ECHHHHHH----HHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 75887899997899999999985379986999--74999999----9999997588999999996388776314788728
Q ss_pred HCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC---CCC-CCHHHCCCEE---EEEECCCCHHHHHHHHH
Q ss_conf 1177115566554060016813320103523644279999348---655-4413117247---99825878689998999
Q gi|254780270|r 448 DLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN---TLN-IPLPLMDRME---IIRIAGYTEEEKLQIAK 520 (820)
Q Consensus 448 ~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan---~~~-i~~~l~drme---~i~~~~y~~~ek~~i~~ 520 (820)
-- ...--+.++++ -=++-.|-+.+++-- +++ +..-|+.|++ ++++..-..+..+.|.+
T Consensus 217 K~--~tqeEff~tfN-------------~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~GL~v~I~~Pd~etr~~Il~ 281 (455)
T PRK12422 217 KG--ATQEEFFHTFN-------------SLHTEGKLIVISSSYAPGDLKAMEERLISRFEWGIAIPIHPLTREGLRSFLM 281 (455)
T ss_pred CH--HHHHHHHHHHH-------------HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHH
T ss_conf 48--89999999999-------------9998599699968989576512689999886376132168999899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 86089899862578131322899999997317741023478887999989876542117
Q gi|254780270|r 521 NHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKN 579 (820)
Q Consensus 521 ~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~ 579 (820)
+ ..+.. .+.++++++++|.++.+. -||+|+..+..+...++..-+.+
T Consensus 282 ~-----k~~~~-----~~~l~~ev~~~iA~~i~~--niReLeGal~~l~~~~~~~~~~~ 328 (455)
T PRK12422 282 R-----QAEQL-----SIRIEETALDFLIQALSS--NVKTLLHALTLLAKRVAYKKLSH 328 (455)
T ss_pred H-----HHHHC-----CCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9-----99871-----888844689999999755--17999999999999999871568
No 176
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.18 E-value=2.9e-05 Score=58.66 Aligned_cols=176 Identities=30% Similarity=0.424 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 2106889987766520116899999999999984---------2444673599860565650279999997708824998
Q gi|254780270|r 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR---------VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~---------~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
...+...-..||++--||.-||.||-+.-|.... .....+-.+||.|-||+|||++|...|..|-
T Consensus 10 ~~~~~~~l~~l~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~------ 83 (284)
T TIGR02880 10 ESGIKEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILH------ 83 (284)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH------
T ss_conf 75799999987676216415889999999999999999874221048832677516898724899999999998------
Q ss_pred ECCCCCCHH-------HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH-HCC---C-CHHHHHHHHCCCCC
Q ss_conf 618888888-------83563200145671289999983278873999933155423-117---7-11556655406001
Q gi|254780270|r 398 SLGGVYDEA-------DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS-DLR---G-DPSAALLEVLDPAQ 465 (820)
Q Consensus 398 slgg~~d~~-------~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~-~~~---g-dp~~allevldp~q 465 (820)
.||=++-.. ++-| -|+|-..-+--..|++|. -.|+++||---+-. ++. | +....||.+.....
T Consensus 84 ~lGy~r~G~~~~~trddlvG---qy~GhtaPktke~lk~a~--GGvlfideayyly~P~nerdyG~eaieillq~men~r 158 (284)
T TIGR02880 84 RLGYVRKGHLVSVTRDDLVG---QYIGHTAPKTKEVLKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR 158 (284)
T ss_pred HCCCCCCCCEEEEEHHHHHH---HHHCCCCCHHHHHHHHHC--CCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 71540036267853001311---221257722689998742--8736642203321776410223799999999872365
Q ss_pred CCCEEEEECCCCCCCCCEEEEEECCCC-C---CCHH-HCCC-EEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 681332010352364427999934865-5---4413-1172-47998258786899989998608989
Q gi|254780270|r 466 NSSFVDHYLEVEYDLSDVMFIMTANTL-N---IPLP-LMDR-MEIIRIAGYTEEEKLQIAKNHLVKKV 527 (820)
Q Consensus 466 n~~f~d~y~~~~~dls~v~fi~tan~~-~---i~~~-l~dr-me~i~~~~y~~~ek~~i~~~~l~p~~ 527 (820)
+. -|+.++-+.+- + -..| +..| -.-|+.|.|+.+|-..||.--|-.++
T Consensus 159 ~~--------------lvvi~aGy~~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~~~ 212 (284)
T TIGR02880 159 DD--------------LVVILAGYKDRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEEQQ 212 (284)
T ss_pred CC--------------EEEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 53--------------7888717078888875117862467764315888776789999999886541
No 177
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.16 E-value=6e-05 Score=56.31 Aligned_cols=88 Identities=26% Similarity=0.291 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999998424446735998605656502799999977088249986188888888356320014567128999998
Q gi|254780270|r 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428 (820)
Q Consensus 349 ~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~ 428 (820)
..+.+|+. ...++....-|-|.||+|||||-|+..||++|-++-+.+.+=-+ ..+++.-+-+|-..--...++.++
T Consensus 142 ~~a~~F~~--~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~--p~~~~~lK~s~~d~s~~~~i~~~k 217 (306)
T PRK08939 142 MAALDFLE--AYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHF--PEFIRELKNAISDGSVKEKIDAVK 217 (306)
T ss_pred HHHHHHHH--HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH--HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999--73769888778898999998999999999999986992999875--999999999864898899999984
Q ss_pred HCCCCCEEEEEECHHH
Q ss_conf 3278873999933155
Q gi|254780270|r 429 RAKRSNPLLLLDEIDK 444 (820)
Q Consensus 429 ~~~~~npv~~ldeidk 444 (820)
+ -||.+||.|..
T Consensus 218 ~----~~vLiLDDiGa 229 (306)
T PRK08939 218 E----APVLMLDDIGA 229 (306)
T ss_pred C----CCEEEEECCCC
T ss_conf 4----99899844465
No 178
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=98.16 E-value=9.1e-06 Score=62.48 Aligned_cols=277 Identities=24% Similarity=0.404 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCC---HHHHCCCCCC-CCCC---
Q ss_conf 999999999984244467359986056565027999999770---88249986188888---8883563200-1456---
Q gi|254780270|r 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYD---EADIRGHRRT-YIGS--- 418 (820)
Q Consensus 349 ~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d---~~~i~gh~~t-y~ga--- 418 (820)
.++++.+ ++..+. ++ ..+|=|=-||||=-+||.|..-= +||||++.+.-+.| |||+=||=+= +-||
T Consensus 222 ~~v~~~~--~~vA~~-nS-TVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAALse~lLESELFGHEKGAFTGA~~~ 297 (574)
T TIGR01817 222 RQVVDQI--KVVARS-NS-TVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAALSETLLESELFGHEKGAFTGAVAQ 297 (574)
T ss_pred HHHHHHH--HHHCCC-CC-EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999886--520131-76-6785056574433444234046645578854500644776112454513430146888751
Q ss_pred CCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHC--------------------------CCC---CCCCE
Q ss_conf 7128999998327887399993315542311771155665540--------------------------600---16813
Q gi|254780270|r 419 MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL--------------------------DPA---QNSSF 469 (820)
Q Consensus 419 ~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevl--------------------------dp~---qn~~f 469 (820)
--||+= |-.-|| .|||||.-+|..|+ +-||=|| |=| |+-+|
T Consensus 298 RkGRFE--lAdGGT----LFLDEIGEISPaFQ----AKLLRVLQEGEFERVGG~~TlKVdVRlvaATNrdLE~aV~~GeF 367 (574)
T TIGR01817 298 RKGRFE--LADGGT----LFLDEIGEISPAFQ----AKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEF 367 (574)
T ss_pred CCCCEE--ECCCCC----CCCCCCCCCCHHHH----HHHHHHHHCCCEEEECCCEEEEEEEEEEECCCCCHHHHHHCCCC
T ss_conf 777533--027883----20000146785688----89988752100253278724887367886137355889727897
Q ss_pred E-EEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHH
Q ss_conf 3-20103523644279999348655-44131172479982587868999899986089899862578131-322899999
Q gi|254780270|r 470 V-DHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEE-CCISDGVLL 546 (820)
Q Consensus 470 ~-d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~-~~~~~~~i~ 546 (820)
+ |=|. -|| ... +-||||.|++=|- ---++++-|.-++||- . +.|++.||+
T Consensus 368 RaDLYY----Rin---------VvPl~lPPLRER~~DIP-----------~LA~~fL~kf~~en~R---~mL~~~~~Ai~ 420 (574)
T TIGR01817 368 RADLYY----RIN---------VVPLILPPLRERREDIP-----------LLAEAFLEKFNRENGR---PMLTLSPSAIR 420 (574)
T ss_pred CCHHHH----HHH---------HHHHHCCCCCCCCCHHH-----------HHHHHHHHHHHHHHCC---CEEEECHHHHH
T ss_conf 302355----442---------22340787778731168-----------9999999987665187---20322678998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCH--------HHHHHHHCCCC-CC---CCCHHCCCCCCCC
Q ss_conf 997317741023478887999989876542117852012796--------78675305200-03---3200022336500
Q gi|254780270|r 547 DIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINE--------NNLQDYLGVPR-YK---YGKIEGEDQVGIV 614 (820)
Q Consensus 547 ~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~--------~~l~~~lg~~~-~~---~~~~~~~~~~G~v 614 (820)
.+-+ |-+=-=||+||=||. ..|.-- ++ -+||. +++...|..+. |. ..........-.+
T Consensus 421 ~Lm~-c~wPGNVRELENC~e----RtAtLs-~~----~~It~~df~c~~~~c~s~~L~~~~~~~~~~P~~~~~p~~~~~~ 490 (574)
T TIGR01817 421 VLMS-CKWPGNVRELENCVE----RTATLS-RS----GTITRSDFSCQSGQCLSKMLAKSSAYKKVDPAVPDAPLGAVSI 490 (574)
T ss_pred HHHC-CCCCCCCEEHHHHHH----HHHHHC-CC----CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 9751-789997400443787----787541-68----8516423664278888888888887788778777888886532
Q ss_pred CEEEECCCCCEEEE-E-EEEEECCCCCEEECC---------CHHHHHHH---HHHHHHHHHHHHHHH-CCCCHH----HH
Q ss_conf 00000001680799-9-999974899724432---------56899999---999999999998886-299855----74
Q gi|254780270|r 615 TGLAWTEVGGEILT-V-EGVIMPGKGEITITG---------NLKEIMKE---SILAASSYVRSKATT-FGIIPS----AF 675 (820)
Q Consensus 615 ~GLa~t~~GG~~l~-I-E~~~~~g~g~l~lTG---------~lg~vmkE---S~~~A~s~~k~~~~~-~~~~~~----~~ 675 (820)
++||-+.. +| + +.......+.-.++| .|-| +| +|.--..||-+.|.+ ++++|. -+
T Consensus 491 ~pla~~~~----~PA~~~pa~~~~p~~~~~~gteaCPavA~~l~e--RERli~AlE~aGWVQAKAARlLg~TPRQVgYal 564 (574)
T TIGR01817 491 VPLAETTA----LPAVESPASAALPAEVGLSGTEACPAVAPTLSE--RERLIAALEKAGWVQAKAARLLGLTPRQVGYAL 564 (574)
T ss_pred CCCCCCCC----CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 57301467----752205433467766777875545567887231--789999997515379999997378655899999
Q ss_pred HHCCCEE
Q ss_conf 2078147
Q gi|254780270|r 676 NEINIHV 682 (820)
Q Consensus 676 ~~~diHi 682 (820)
.++||||
T Consensus 565 r~~~I~~ 571 (574)
T TIGR01817 565 RKLNIEV 571 (574)
T ss_pred HHCCCCC
T ss_conf 8848765
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.3e-05 Score=56.71 Aligned_cols=174 Identities=22% Similarity=0.378 Sum_probs=99.1
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEECCCCCCHHHHC
Q ss_conf 5201168999999999999842444673599860565650279999997708----------824998618888888835
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG----------RQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~----------r~f~~islgg~~d~~~i~ 409 (820)
-.-|=++--+|.++.|. +..+++ | +|+|+||||||.|+...|...- ..-+...+|.+--.+-.|
T Consensus 171 PvIGRd~EI~r~iqIL~-RR~KNN---P--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyR 244 (786)
T COG0542 171 PVIGRDEEIRRTIQILS-RRTKNN---P--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYR 244 (786)
T ss_pred CCCCHHHHHHHHHHHHH-CCCCCC---C--EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCC
T ss_conf 77374799999999983-568899---8--47668988899999899999746999978758879971487674646535
Q ss_pred CCCCCCCCCCCHHH---HHHHHHCCCCCEEEEEECHHHH-HHHC-C---CCHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 63200145671289---9999832788739999331554-2311-7---7115566554060016813320103523644
Q gi|254780270|r 410 GHRRTYIGSMPGRI---IQSLKRAKRSNPLLLLDEIDKM-GSDL-R---GDPSAALLEVLDPAQNSSFVDHYLEVEYDLS 481 (820)
Q Consensus 410 gh~~ty~ga~pg~i---i~~l~~~~~~npv~~ldeidk~-~~~~-~---gdp~~allevldp~qn~~f~d~y~~~~~dls 481 (820)
|-.--|+ +..+.+++ |.++++|||..+ |.+. . .|.++.|--.|-- -+ =
T Consensus 245 -------GeFEeRlk~vl~ev~~~~--~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLAR---Ge------------L 300 (786)
T COG0542 245 -------GEFEERLKAVLKEVEKSK--NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR---GE------------L 300 (786)
T ss_pred -------CCHHHHHHHHHHHHHCCC--CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC---CC------------E
T ss_conf -------738999999999985179--84999823554057776666651256646778745---87------------3
Q ss_pred CEEEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 2799993486----5544131172479982587868999899986089899862578131322899999997
Q gi|254780270|r 482 DVMFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDII 549 (820)
Q Consensus 482 ~v~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii 549 (820)
+++=-+|.+- ..-.++|--|+-.|.+.--+.++-+.|-+. |-++--.-| .|.++|+||..-+
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG-lk~~yE~hH-----~V~i~D~Al~aAv 366 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG-LKERYEAHH-----GVRITDEALVAAV 366 (786)
T ss_pred EEEEECCHHHHHHHHHHCHHHHHCCCEEECCCCCHHHHHHHHHH-HHHHHHHCC-----CCEECHHHHHHHH
T ss_conf 79973558999887330667784675102799898999999987-788887706-----9643379999999
No 180
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.14 E-value=6.2e-06 Score=63.76 Aligned_cols=151 Identities=25% Similarity=0.416 Sum_probs=80.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------CEE-EEECCCCCCHHHHCCC
Q ss_conf 52011689999999999998424446735998605656502799999977088-------249-9861888888883563
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------QYV-RMSLGGVYDEADIRGH 411 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------~f~-~islgg~~d~~~i~gh 411 (820)
|.-|-+.+|.-+ |. |. ..|--+.++||||+|||.+|+.++..|-- +.. --|+.|......+..|
T Consensus 4 di~GQ~~akrAl-~i-Aa------aG~H~lLl~GpPG~GKTmlA~rl~~iLP~l~~~e~le~~~i~S~~g~~~~~~l~~~ 75 (207)
T pfam01078 4 DVKGQEQAKRAL-EI-AA------AGGHNLLMIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDGGLIRR 75 (207)
T ss_pred HHCCCHHHHHHH-HH-HH------CCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 863859999999-99-85------47875897889980299999763014899878998877764230368777774457
Q ss_pred C--------CC---CCC----CCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEE-CC
Q ss_conf 2--------00---145----67128999998327887399993315542311771155665540600168133201-03
Q gi|254780270|r 412 R--------RT---YIG----SMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHY-LE 475 (820)
Q Consensus 412 ~--------~t---y~g----a~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y-~~ 475 (820)
| -| .+| ..||-|..| .|.|.+|||+.....+ --.+|++.|.--+..--+-+| ..
T Consensus 76 rPfr~PHhs~s~~aliGGg~~~~PGeIslA------H~GVLFLDE~~Ef~~~----vle~LrqpLE~~~v~IsRa~~~~~ 145 (207)
T pfam01078 76 RPFRAPHHSASAAALVGGGSIPRPGEISLA------HNGVLFLDELPEFSRR----VLESLRQPLEDGEITISRARAKVT 145 (207)
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCEEEC------CCCEEEECCHHHCCHH----HHHHHHHHHCCCCEEEEECCCEEE
T ss_conf 986578876436332268888999706663------6878884764653988----999998766049489995675898
Q ss_pred CCCCCCCEEEEEECCC-----------------------CC-CCHHHCCCEEE-EEECCCC
Q ss_conf 5236442799993486-----------------------55-44131172479-9825878
Q gi|254780270|r 476 VEYDLSDVMFIMTANT-----------------------LN-IPLPLMDRMEI-IRIAGYT 511 (820)
Q Consensus 476 ~~~dls~v~fi~tan~-----------------------~~-i~~~l~drme~-i~~~~y~ 511 (820)
+| ++.++|+++|- .+ |+.||+||+.+ ++++.-+
T Consensus 146 ~P---A~f~LvaA~NPCpCG~~~~~~~~C~C~~~~~~~Y~~rlSgPllDRiDl~v~~~~~~ 203 (207)
T pfam01078 146 FP---ARFQLVAAMNPCPCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDLQVEVPRLS 203 (207)
T ss_pred EC---CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCEEEEEECCCCC
T ss_conf 60---43488885057777878899997578899999998764522020687899778999
No 181
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=98.14 E-value=1.2e-05 Score=61.66 Aligned_cols=126 Identities=25% Similarity=0.385 Sum_probs=79.0
Q ss_pred CCCC-CCCCCCCCH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 0415-876632210---688998776652011689999999999998424446735998605656502799999977088
Q gi|254780270|r 317 GVPW-DKKSKTKKN---LDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR 392 (820)
Q Consensus 317 ~lPW-~~~t~~~~d---l~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r 392 (820)
.=|| .||.+.... +.+-+ +++|++-+.-. +.-..+...|.||++.||||.|||+..|-+||.||.
T Consensus 76 ~e~W~eKykP~~~~~lAvHK~K---------i~~v~~wl~a~--~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~ 144 (670)
T TIGR00602 76 NELWVEKYKPETQEELAVHKKK---------IEEVEEWLKAQ--VLESAKKRGGSILLITGPSGCGKSTTIKILSKELGI 144 (670)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8744102675424577664777---------99999997520--020456677537884175588447899999888644
Q ss_pred CEE--------------------------EE---ECCCCCCHHHHCCCCCCCCCCCCHHHHHHH-HHCCCCCEEEEEECH
Q ss_conf 249--------------------------98---618888888835632001456712899999-832788739999331
Q gi|254780270|r 393 QYV--------------------------RM---SLGGVYDEADIRGHRRTYIGSMPGRIIQSL-KRAKRSNPLLLLDEI 442 (820)
Q Consensus 393 ~f~--------------------------~i---slgg~~d~~~i~gh~~ty~ga~pg~ii~~l-~~~~~~npv~~ldei 442 (820)
.+. ++ |+=-+-.|-+++-..+. =+|.+ ..+.+.--+||+|||
T Consensus 145 ~~~ew~Np~~~~~~~n~~k~~~~~~~~f~~~PY~sq~e~f~efll~a~kY~--------~lQ~lG~~~~~~kk~Il~e~l 216 (670)
T TIGR00602 145 KVQEWLNPVLLKEQKNDEKDTLSLESKFSRFPYLSQIEVFSEFLLRATKYN--------KLQKLGDDLQTDKKLILVEDL 216 (670)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH--------HHHHCCCCCCCCCCEEEECCC
T ss_conf 565540787888885124444212540221676314554678764212346--------664214110247545772137
Q ss_pred HHHHHHCCCCHH-HHHHHHCC
Q ss_conf 554231177115-56655406
Q gi|254780270|r 443 DKMGSDLRGDPS-AALLEVLD 462 (820)
Q Consensus 443 dk~~~~~~gdp~-~allevld 462 (820)
=.+ +-|++|+. .|+=+||-
T Consensus 217 Phl-n~F~~d~~rr~~~~vlr 236 (670)
T TIGR00602 217 PHL-NKFYRDLDRRALREVLR 236 (670)
T ss_pred CCH-HHHCCCHHHHHHHHHHH
T ss_conf 640-22136612689999999
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00013 Score=53.75 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=84.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCCCCHHH-HCC-CCCC-CCCCCCHH---------HHHHHHHC
Q ss_conf 6735998605656502799999977088--249986188888888-356-3200-14567128---------99999832
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGR--QYVRMSLGGVYDEAD-IRG-HRRT-YIGSMPGR---------IIQSLKRA 430 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r--~f~~islgg~~d~~~-i~g-h~~t-y~ga~pg~---------ii~~l~~~ 430 (820)
-+..+.|.||+|+||+++|+.+|++|-= +-..-+.|..++--- ..| |--. ++...-|+ +++.+...
T Consensus 22 ~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~~~~~~ 101 (324)
T PRK06871 22 GHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINEKVSQF 101 (324)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 54378768999978999999999998289999999888898999997389998799846788878899999999998646
Q ss_pred --CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEE
Q ss_conf --78873999933155423117711556655406-0016813320103523644279999348655-4413117247998
Q gi|254780270|r 431 --KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIR 506 (820)
Q Consensus 431 --~~~npv~~ldeidk~~~~~~gdp~~allevld-p~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~ 506 (820)
...+-|+++|+.|+|+.. .++|||-.|. |. ++++||..++..+ +++.++.|--++.
T Consensus 102 ~~~g~~KV~iI~~ae~m~~~----AaNALLKtLEEPp----------------~~~~fiL~t~~~~~ll~TI~SRCq~~~ 161 (324)
T PRK06871 102 AQQGGNKVVYIQGAERLTEA----AANALLKTLEEPR----------------PNTYFLLQADLSASLLATIYSRCQTWL 161 (324)
T ss_pred CCCCCCEEEEECCHHHHHHH----HHHHHHHHHCCCC----------------CCEEEEEEECCCCCCCCHHHHCCCCEE
T ss_conf 22059669997588885799----9999999833898----------------783899987870103240862661200
Q ss_pred ECCCCHHHHHH
Q ss_conf 25878689998
Q gi|254780270|r 507 IAGYTEEEKLQ 517 (820)
Q Consensus 507 ~~~y~~~ek~~ 517 (820)
++.-..++-..
T Consensus 162 ~~~p~~~~~~~ 172 (324)
T PRK06871 162 IHVPEEQIALD 172 (324)
T ss_pred CCCCCHHHHHH
T ss_conf 89949999999
No 183
>KOG2680 consensus
Probab=98.13 E-value=2.2e-05 Score=59.54 Aligned_cols=203 Identities=29% Similarity=0.442 Sum_probs=117.3
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCC---------------------CC--CHHH-HCCCC-
Q ss_conf 424446735998605656502799999977088--249986188---------------------88--8888-35632-
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR--QYVRMSLGG---------------------VY--DEAD-IRGHR- 412 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r--~f~~islgg---------------------~~--d~~~-i~gh~- 412 (820)
..++..|..+++.|+||+|||-||-.+|++||- ||..||-.- ++ .|.| |.|.-
T Consensus 60 ~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRksiGvrIKEetevIEGEVV 139 (454)
T KOG2680 60 REGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRKSIGVRIKEETEVIEGEVV 139 (454)
T ss_pred HCCCCCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHHCEEEEHEEEEECCEEE
T ss_conf 72863213899724898884410000245407887503650222221000177999999888516474000014300589
Q ss_pred -------CCCCCCCC-----------------HHHHHHHHHCCCCC-EEEEEEC----HHHHHHHCCC----CHH-----
Q ss_conf -------00145671-----------------28999998327887-3999933----1554231177----115-----
Q gi|254780270|r 413 -------RTYIGSMP-----------------GRIIQSLKRAKRSN-PLLLLDE----IDKMGSDLRG----DPS----- 454 (820)
Q Consensus 413 -------~ty~ga~p-----------------g~ii~~l~~~~~~n-pv~~lde----idk~~~~~~g----dp~----- 454 (820)
-|-.|+.- -+.|.+|.|-++.- -||-+|- |-|+|.+|.- |+.
T Consensus 140 eiqidRp~tg~g~k~GKlt~kTtdMEt~ydlG~Kmi~~l~KeKV~aGDVI~idka~GkitKlGrSf~rsrdyDamG~~tk 219 (454)
T KOG2680 140 EIQIDRPATGMGSKVGKLTLKTTDMETIYDLGMKMIESLTKEKVQAGDVITIDKASGKITKLGRSFTRSRDYDAMGSQTK 219 (454)
T ss_pred EEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHHHCCCCCCCCCCCCCCCCC
T ss_conf 99960466676764444677521115588788999877657533678559987024630021012010346776577651
Q ss_pred ------HHH-------------------------------------HHHCCCCC----------------CCCEEE--EE
Q ss_conf ------566-------------------------------------55406001----------------681332--01
Q gi|254780270|r 455 ------AAL-------------------------------------LEVLDPAQ----------------NSSFVD--HY 473 (820)
Q Consensus 455 ------~al-------------------------------------levldp~q----------------n~~f~d--~y 473 (820)
.-| -||-|--. .--|.| |.
T Consensus 220 fVqCPeGElqkrkevvhtvsLHeIDViNSrtqG~lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFIDEvHM 299 (454)
T KOG2680 220 FVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFIDEVHM 299 (454)
T ss_pred EECCCCHHHHHEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEHH
T ss_conf 42399314410023357643000133455665248997078652018889888788898886177242255178740021
Q ss_pred CC----------CCCCCCCEEEEEEC---------CCC--C-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03----------52364427999934---------865--5-44131172479982587868999899986089899862
Q gi|254780270|r 474 LE----------VEYDLSDVMFIMTA---------NTL--N-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEH 531 (820)
Q Consensus 474 ~~----------~~~dls~v~fi~ta---------n~~--~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~ 531 (820)
|| +.-|++-++.++|- |+. . ||.-|+|||-+|...+|+.+|-..|.+-
T Consensus 300 LDIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~i---------- 369 (454)
T KOG2680 300 LDIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRI---------- 369 (454)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHH----------
T ss_conf 1157999888876504685799972775577605777898888677764412552565768899999875----------
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHH
Q ss_conf 57813132289999999731774102347---8887999989876
Q gi|254780270|r 532 ALKQEECCISDGVLLDIIRLFTHEAGVRS---FERALMKIARKAV 573 (820)
Q Consensus 532 ~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~---l~r~i~~i~r~~~ 573 (820)
-..++++.++++|+..+..- ..+.+.|- |=-.-.-+|+|..
T Consensus 370 Rc~EEdv~m~~~A~d~Lt~i-~~~tsLRYai~Lit~a~~~~~krk 413 (454)
T KOG2680 370 RCQEEDVEMNPDALDLLTKI-GEATSLRYAIHLITAASLVCLKRK 413 (454)
T ss_pred HHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 50052133587899999986-131237899999889999998754
No 184
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.12 E-value=2.4e-05 Score=59.33 Aligned_cols=186 Identities=20% Similarity=0.279 Sum_probs=114.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf 5998605656502799999977088-----24998618888888835632001456712899999832788739999331
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGR-----QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI 442 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r-----~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei 442 (820)
-|-++|++|+|||.|-.+||..+-+ +.+.++ .|.+.. -|+.|+-.+=++.+++-=..-.|+|+|.|
T Consensus 147 PLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~t-----ae~F~~----~~v~al~~~~~~~Fr~~yr~~DvLliDDi 217 (447)
T PRK00149 147 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVS-----SEKFTN----DFVKALRNNAMEEFKEKYRSVDVLLIDDI 217 (447)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-----HHHHHH----HHHHHHHCCCHHHHHHHHHCCCEEEECHH
T ss_conf 558977998878899999999999858997289954-----999999----99999851869999999972885432148
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC---CCC-CCHHHCCCEE---EEEECCCCHHHH
Q ss_conf 554231177115566554060016813320103523644279999348---655-4413117247---998258786899
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN---TLN-IPLPLMDRME---IIRIAGYTEEEK 515 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan---~~~-i~~~l~drme---~i~~~~y~~~ek 515 (820)
.=++.- ..-.--++++++-= ++-.|-+.+++.- ++. +.+-|+.|++ ++++..-..+-+
T Consensus 218 qfl~gk--~~tqeeff~~fn~l-------------~~~~kqiv~tsd~~P~~l~~l~~rL~SRf~~Gl~~~i~~Pd~e~r 282 (447)
T PRK00149 218 QFLAGK--EKTQEEFFHTFNAL-------------HENNKQIVITSDRPPKELEGLEDRLRSRFEWGLTVDIEPPDLETR 282 (447)
T ss_pred HHHHCC--HHHHHHHHHHHHHH-------------HHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEECCCCCHHHH
T ss_conf 886055--77999999999999-------------984996899578896765651177886763762651059999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 98999860898998625781313228999999973177410234788879999898765421178520127967867530
Q gi|254780270|r 516 LQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 516 ~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
+.|.++-. +.. .+.++++++++|.++.+. -||+||-.|.++.-... +.+. .|+.+.+.+.|
T Consensus 283 ~~Il~~k~-----~~~-----~~~l~~~v~~~iA~~~~~--nvR~LeGal~~l~a~~~---~~~~----~i~~~~~~~~l 343 (447)
T PRK00149 283 VAILQKKA-----EEE-----GINLPNEVLEFIAKRIRS--NIRELEGALNRLVAYAS---LTGR----PITLELAKEAL 343 (447)
T ss_pred HHHHHHHH-----HHC-----CCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH---HHCC----CCCHHHHHHHH
T ss_conf 99999999-----972-----899998999999971268--89999999999999999---8689----99999999999
Q ss_pred C
Q ss_conf 5
Q gi|254780270|r 596 G 596 (820)
Q Consensus 596 g 596 (820)
+
T Consensus 344 ~ 344 (447)
T PRK00149 344 K 344 (447)
T ss_pred H
T ss_conf 9
No 185
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.10 E-value=0.00024 Score=51.76 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=95.6
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE---EEEECCCCCCHHHHCC---CCC------CCCC--------
Q ss_conf 9842444673599860565650279999997708824---9986188888888356---320------0145--------
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY---VRMSLGGVYDEADIRG---HRR------TYIG-------- 417 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f---~~islgg~~d~~~i~g---h~~------ty~g-------- 417 (820)
..+-.+.+++++.++||=++|||||.+..++-+.-+. +.+..........++- .++ ...+
T Consensus 12 ~~~~~~~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (223)
T pfam01637 12 EEWAERGTYPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGIAKSK 91 (223)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99996699718999868878799999999986334685289995144437999998888899999987651233222112
Q ss_pred ---CCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf ---671289999983278873999933155423117711--556655406001681332010352364427999934865
Q gi|254780270|r 418 ---SMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL 492 (820)
Q Consensus 418 ---a~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp--~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~ 492 (820)
...-.+...+.+. ..++|+++||..-+. ..+++| -++|..+.|.-+ .-+++.||++..+.
T Consensus 92 ~~~~~l~~~~~~l~~~-~~~~iiviDEfq~l~-~~~~~~~~~~~l~~~~d~~~-------------~~~~~~~I~~GS~~ 156 (223)
T pfam01637 92 LAFLSLTLLFELLKRK-GKKIAIIIDEVQYAI-GLNGAESYVKLLLNLIDYPP-------------KEYHLIVVLCGSSE 156 (223)
T ss_pred CHHHHHHHHHHHHHHC-CCCEEEEEECHHHHH-HCCCCHHHHHHHHHHHHHHH-------------CCCCEEEEEECCHH
T ss_conf 0788999999999855-996599970167764-02443059999999999752-------------45775899972719
Q ss_pred -------CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf -------5441311724799825878689998999860898998625781313228999999973
Q gi|254780270|r 493 -------NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR 550 (820)
Q Consensus 493 -------~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~ 550 (820)
.-..||.-|-..|++.+...++=.+-.+ +..++.| +.++++.++.+..
T Consensus 157 ~~m~~~~~~~~plygR~~~i~l~p~~~~~~~efl~-----~~f~e~~-----~~~~~~~~~~iy~ 211 (223)
T pfam01637 157 GLTIELLDYKSPLYGRHRWALLKPFDFETAWNFLR-----EGFEELY-----EPGPKEEFEEVWR 211 (223)
T ss_pred HHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHH-----HHHHHHC-----CCCCHHHHHHHHH
T ss_conf 99999862056535750227726899899999999-----9999847-----8999899999999
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=5.3e-05 Score=56.70 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=86.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEECCCCCCHHH-HCC-CCCCC-CCC-CCHH--HHHHHHHC----
Q ss_conf 44467359986056565027999999770882-49986188888888-356-32001-456-7128--99999832----
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-YVRMSLGGVYDEAD-IRG-HRRTY-IGS-MPGR--IIQSLKRA---- 430 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r~-f~~islgg~~d~~~-i~g-h~~ty-~ga-~pg~--ii~~l~~~---- 430 (820)
.+.-+..+.|.||+|+||+++|+.+|++|-=. ...-+.|-.+.-.. -.| |---| +.. ..|+ -|+.++..
T Consensus 21 ~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~ 100 (319)
T PRK06090 21 AERIPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 69963067667999857999999999998089999998877877999875899982366123356768799999999997
Q ss_pred -----CCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE
Q ss_conf -----7887399993315542311771155665540-60016813320103523644279999348655-4413117247
Q gi|254780270|r 431 -----KRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME 503 (820)
Q Consensus 431 -----~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme 503 (820)
...+-|+++|+.|+|+. ..++|||-.| .|. .+++||.+++..+ +++.++.|.-
T Consensus 101 ~~~~~~g~~KV~iI~~ae~m~~----~AaNALLKtLEEPp----------------~~t~fiL~t~~~~~ll~TI~SRCq 160 (319)
T PRK06090 101 QESSQLGGYRLFVIEPADAMNE----SASNALLKTLEEPA----------------PNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred HHCCCCCCCEEEEECCHHHCCH----HHHHHHHHHHCCCC----------------CCEEEEEEECCHHHCCCCHHHCCC
T ss_conf 5452106936999814443499----99999999842899----------------883899876851208641876144
Q ss_pred EEEECCCCHHHHH
Q ss_conf 9982587868999
Q gi|254780270|r 504 IIRIAGYTEEEKL 516 (820)
Q Consensus 504 ~i~~~~y~~~ek~ 516 (820)
.+.++.-..++-.
T Consensus 161 ~~~l~~p~~~~~~ 173 (319)
T PRK06090 161 QWVVTPPSTDQAM 173 (319)
T ss_pred CCCCCCCCHHHHH
T ss_conf 5028995999999
No 187
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.08 E-value=0.00034 Score=50.61 Aligned_cols=212 Identities=21% Similarity=0.310 Sum_probs=134.3
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCCCCC---HHHHC
Q ss_conf 76652011689999999999998424446735998605656502799999977----088249986188888---88835
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA----TGRQYVRMSLGGVYD---EADIR 409 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~a----l~r~f~~islgg~~d---~~~i~ 409 (820)
|=-+++-++++.|+|.- ..+ .|.-+.+.|++||||+-+|.-|... .+-||+.+.++-... ++++=
T Consensus 80 LIG~~~~~~~~~eqik~------~ap--~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLF 151 (403)
T COG1221 80 LIGESPSLQELREQIKA------YAP--SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELF 151 (403)
T ss_pred HHCCCHHHHHHHHHHHH------HCC--CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHHH
T ss_conf 63568889999999986------189--9984798668875388999999986121358987997777737677777773
Q ss_pred CCCC-CCCCCC---CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEE
Q ss_conf 6320-014567---128999998327887399993315542311771155665540600168133201035236442799
Q gi|254780270|r 410 GHRR-TYIGSM---PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMF 485 (820)
Q Consensus 410 gh~~-ty~ga~---pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~f 485 (820)
||.. +|-||. +|.+=++ .-...+||||--+...-+ ..||-+||- ..|+--==.-| .-++|..
T Consensus 152 G~~kGaftGa~~~k~Glfe~A------~GGtLfLDEI~~LP~~~Q----~kLl~~le~---g~~~rvG~~~~-~~~dVRl 217 (403)
T COG1221 152 GHEKGAFTGAQGGKAGLFEQA------NGGTLFLDEIHRLPPEGQ----EKLLRVLEE---GEYRRVGGSQP-RPVDVRL 217 (403)
T ss_pred CCCCCEEECCCCCCCCHHEEC------CCCEEEHHHHHHCCHHHH----HHHHHHHHC---CCEEECCCCCC-CCCCCEE
T ss_conf 200000025667867642052------797776563653798589----999999871---86576688888-6777404
Q ss_pred EEECCC-C-C-CCH--HHCCC--EEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 993486-5-5-441--31172--47998258786899989--99860898998625781313228999999973177410
Q gi|254780270|r 486 IMTANT-L-N-IPL--PLMDR--MEIIRIAGYTEEEKLQI--AKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEA 556 (820)
Q Consensus 486 i~tan~-~-~-i~~--~l~dr--me~i~~~~y~~~ek~~i--~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~Ea 556 (820)
||.-|. + . +-. -|.+| .-+|++|+--.- |-.| --.|.+.....+.++... .++++++..+ ..|+...
T Consensus 218 i~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER-~~Di~~L~e~Fl~~~~~~l~~~~~--~~~~~a~~~L-~~y~~pG 293 (403)
T COG1221 218 ICATTEDLEEAVLAGADLTRRLNILTITLPPLRER-KEDILLLAEHFLKSEARRLGLPLS--VDSPEALRAL-LAYDWPG 293 (403)
T ss_pred EECCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHC-HHHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHH-HHCCCCC
T ss_conf 51356687999874052556416754318972435-555999999999999997399988--8889999999-8488998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 234788879999898765
Q gi|254780270|r 557 GVRSFERALMKIARKAVT 574 (820)
Q Consensus 557 GvR~l~r~i~~i~r~~~~ 574 (820)
-||+|+..+..+|-..-.
T Consensus 294 NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 294 NIRELKNLVERAVAQASG 311 (403)
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 399999999999997354
No 188
>KOG0729 consensus
Probab=98.07 E-value=1.8e-05 Score=60.27 Aligned_cols=86 Identities=27% Similarity=0.541 Sum_probs=59.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEECHHHH
Q ss_conf 35998605656502799999977088249986188888888356320014567128999998327-88739999331554
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAK-RSNPLLLLDEIDKM 445 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~-~~npv~~ldeidk~ 445 (820)
.-++|+||||+|||-.|+.+|+-.+--|.|+- .||+- ..|||--.-+.-.-...|. -.-++|++||||-+
T Consensus 212 KGvllyGPPGtGKTL~ARAVANRTdAcFIRVi------GSELV---QKYvGEGARMVRElFeMAr~KKACiiFFDEiDAi 282 (435)
T KOG0729 212 KGVLLYGPPGTGKTLCARAVANRTDACFIRVI------GSELV---QKYVGEGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCCEEEEEH------HHHHH---HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 73378689998610899987456674587631------18999---9986246899999999852365279984101022
Q ss_pred HHH-C----CCC--HHHHHHHHC
Q ss_conf 231-1----771--155665540
Q gi|254780270|r 446 GSD-L----RGD--PSAALLEVL 461 (820)
Q Consensus 446 ~~~-~----~gd--p~~allevl 461 (820)
|-. | .|| ....|||++
T Consensus 283 GGaRFDDg~ggDNEVQRTMLEli 305 (435)
T KOG0729 283 GGARFDDGAGGDNEVQRTMLELI 305 (435)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 67203578887279999999999
No 189
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.07 E-value=3.1e-06 Score=66.06 Aligned_cols=59 Identities=34% Similarity=0.505 Sum_probs=49.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHH
Q ss_conf 599860565650279999997708824998618888888835632001456712899999832788739999331554
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKM 445 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~ 445 (820)
|+..-||||.||||+||.||+-|+.+| ||=|-+|+-|+=+| +=++..+++...| ||||.
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~~--iSaG~iRelA~~~G-----------ldl~E~~~aee~~------eIDk~ 60 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKL--ISAGDIRELAEKMG-----------LDLAESKYAEENP------EIDKK 60 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCE--ECCCHHHHHHHHCC-----------CCHHHHHHHCCCC------CCCHH
T ss_conf 788735896864789999998639831--20200788986429-----------8877734430586------31167
No 190
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=98.07 E-value=5.4e-06 Score=64.20 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=68.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC------EEE--EECCCCCC---------H-----HHH---CCCC----CCCCCCC
Q ss_conf 9986056565027999999770882------499--86188888---------8-----883---5632----0014567
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQ------YVR--MSLGGVYD---------E-----ADI---RGHR----RTYIGSM 419 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~------f~~--islgg~~d---------~-----~~i---~gh~----~ty~ga~ 419 (820)
+.+.||||+|||++.+-+++.|... |+. +--+|.|- . |.. .++| ..++.+.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~f 81 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLEEF 81 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHHHH
T ss_conf 89978999889999999999998679707489930212589378999999047826774440688775457716668999
Q ss_pred CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC--C-CCCCH
Q ss_conf 12899999832788739999331554231177115566554060016813320103523644279999348--6-55441
Q gi|254780270|r 420 PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN--T-LNIPL 496 (820)
Q Consensus 420 pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan--~-~~i~~ 496 (820)
....+.+|+++-...-++++|||.||-... -.-..|+.++||+.. -.++|-. + ...-.
T Consensus 82 e~~~~~~L~~a~~~~dlivIDEIG~mEl~s-~~F~~~v~~~l~~~~------------------~vl~ti~~~~~~~~v~ 142 (168)
T pfam03266 82 EEIALPALRRALEEADLIIIDEIGPMELKS-PKFREAIEEVLSSNK------------------PVLAVVHRRSDSPLVE 142 (168)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHHCCCC------------------CEEEEEEECCCCHHHH
T ss_conf 999999998406689899997631453314-999999999966999------------------7999997258983899
Q ss_pred HHCCC--EEEEEEC
Q ss_conf 31172--4799825
Q gi|254780270|r 497 PLMDR--MEIIRIA 508 (820)
Q Consensus 497 ~l~dr--me~i~~~ 508 (820)
.++.| .+++++.
T Consensus 143 ~i~~~~d~~i~~vt 156 (168)
T pfam03266 143 RIRRRPDVKIFVVT 156 (168)
T ss_pred HHHCCCCCEEEEEC
T ss_conf 97417993899978
No 191
>KOG0742 consensus
Probab=98.06 E-value=7.3e-05 Score=55.66 Aligned_cols=199 Identities=29% Similarity=0.419 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHCC------------CCCCC-CCCCCHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHCC-CCCC
Q ss_conf 8999998765404------------15876-63221068899877665201168-----9999999999998424-4467
Q gi|254780270|r 306 SVVRNYLDWLLGV------------PWDKK-SKTKKNLDFAIRILDQDHFGLEK-----VKERIIEYLAVQMRVI-KNKG 366 (820)
Q Consensus 306 ~v~r~Yld~~~~l------------PW~~~-t~~~~dl~~a~~iLd~~hyGl~~-----vK~rile~lav~~~~~-~~~g 366 (820)
.|+-.|+|-++.- ||.-. +.-..-|+..+...-.-.--|+. .-++=||-||.-.-|. ..++
T Consensus 303 ~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a 382 (630)
T KOG0742 303 LVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQA 382 (630)
T ss_pred HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 02899999872884233332046687735099985543777877635777767841277799999999887404300243
Q ss_pred CE--EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH-HHHHHHHHCCCCC--EEEEEEC
Q ss_conf 35--99860565650279999997708824998618888888835632001456712-8999998327887--3999933
Q gi|254780270|r 367 LI--LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPG-RIIQSLKRAKRSN--PLLLLDE 441 (820)
Q Consensus 367 ~i--l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg-~ii~~l~~~~~~n--pv~~lde 441 (820)
|. +.|+||||+|||-.|+++|.--|.-|.-+.=|-| |- .|+.-= +|-+-.--++.+| -+.++||
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV---AP--------lG~qaVTkiH~lFDWakkS~rGLllFIDE 451 (630)
T KOG0742 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV---AP--------LGAQAVTKIHKLFDWAKKSRRGLLLFIDE 451 (630)
T ss_pred HHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCC---CC--------CHHHHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 04400324799986049999998852874100137875---55--------21788999999878875156644998611
Q ss_pred HHHH----HHHCCC-CHHHHHHHHC--CCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHHCCC-EEEEEECCCCH
Q ss_conf 1554----231177-1155665540--6001681332010352364427999934865-544131172-47998258786
Q gi|254780270|r 442 IDKM----GSDLRG-DPSAALLEVL--DPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPLMDR-MEIIRIAGYTE 512 (820)
Q Consensus 442 idk~----~~~~~g-dp~~allevl--dp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l~dr-me~i~~~~y~~ 512 (820)
-|-. ++++-. |--|||=-+| --+|-. +++.+...|-. +.+.+.-|| =|+|+++=--.
T Consensus 452 ADAFLceRnktymSEaqRsaLNAlLfRTGdqSr--------------divLvlAtNrpgdlDsAV~DRide~veFpLPGe 517 (630)
T KOG0742 452 ADAFLCERNKTYMSEAQRSALNALLFRTGDQSR--------------DIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGE 517 (630)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC--------------CEEEEEECCCCCCHHHHHHHHHHHHEECCCCCH
T ss_conf 678998752010258899999889876256554--------------268996058832101678765554130689977
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89998999860898998
Q gi|254780270|r 513 EEKLQIAKNHLVKKVLT 529 (820)
Q Consensus 513 ~ek~~i~~~~l~p~~~~ 529 (820)
+|...+.+-||-.-+.+
T Consensus 518 EERfkll~lYlnkyi~~ 534 (630)
T KOG0742 518 EERFKLLNLYLNKYILK 534 (630)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 89999999999998147
No 192
>PRK08116 hypothetical protein; Validated
Probab=98.06 E-value=7.5e-05 Score=55.58 Aligned_cols=104 Identities=24% Similarity=0.298 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCC---C
Q ss_conf 9999999999998424-446735998605656502799999977088---24998618888888835632001456---7
Q gi|254780270|r 347 VKERIIEYLAVQMRVI-KNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGS---M 419 (820)
Q Consensus 347 vK~rile~lav~~~~~-~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga---~ 419 (820)
+.+--..|. ..+.. ...+.-|.|.||||||||.||-+||+.|-. +...++... .+.--+.||-.. .
T Consensus 90 a~~~a~~Y~--~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~-----ll~~lk~~~~~~~~~~ 162 (262)
T PRK08116 90 AYKVAVKYV--KKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPE-----LLNRIKSTYNSEGKED 162 (262)
T ss_pred HHHHHHHHH--HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH-----HHHHHHHHHHCCCCHH
T ss_conf 999999999--989873646861899898999899999999999998799399988999-----9999999986356101
Q ss_pred CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 12899999832788739999331554231177115566554060
Q gi|254780270|r 420 PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP 463 (820)
Q Consensus 420 pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp 463 (820)
-..+++.+.+ -||.+||++.+-..+- --.+.|.+|+|-
T Consensus 163 ~~e~l~~l~~----~dLLIiDDlG~e~~t~--w~~e~lf~IIn~ 200 (262)
T PRK08116 163 ENEIIRALDN----ADLLILDDLGAEKDTE--WVREKLYNIIDS 200 (262)
T ss_pred HHHHHHHHHC----CCEEEEEHHCCCCCCH--HHHHHHHHHHHH
T ss_conf 9999998612----9989983221456987--899999999999
No 193
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.05 E-value=5.3e-05 Score=56.70 Aligned_cols=177 Identities=21% Similarity=0.274 Sum_probs=104.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHH
Q ss_conf 67359986056565027999999770882499861888888883563200145671289999983278873999933155
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDK 444 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk 444 (820)
..+-|-|+||.|.|||.|..+|+.........-..=.+..+.+.. .+|-|.-..=++.+|+-= .--+.++|.|+-
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~----~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~ 186 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN----DFVKALRDNEMEKFKEKY-SLDLLLIDDIQF 186 (408)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHH----HHHHHHHHHHHHHHHHHH-CCCEEEECHHHH
T ss_conf 689579987999978999999999998629986488504899899----999998850488888764-267355513867
Q ss_pred HHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CC-CCHHHCCCEE---EEEECCCCHHHHH
Q ss_conf 42311771155665540600168133201035236442799993486----55-4413117247---9982587868999
Q gi|254780270|r 445 MGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LN-IPLPLMDRME---IIRIAGYTEEEKL 516 (820)
Q Consensus 445 ~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~-i~~~l~drme---~i~~~~y~~~ek~ 516 (820)
++..-+- .-++.++ |+-=.+-.+ --|.|+.. ++ +.+-|+.|++ ++++.+...+.++
T Consensus 187 l~gk~~~--qeefFh~-------------FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 187 LAGKERT--QEEFFHT-------------FNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred HCCCHHH--HHHHHHH-------------HHHHHHCCC-EEEEECCCCCHHHCCCCHHHHHHHHCEEEEEECCCCHHHHH
T ss_conf 5677157--9999999-------------998885088-79997078832211035889989863057752798889999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999860898998625781313228999999973177410234788879999898765
Q gi|254780270|r 517 QIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVT 574 (820)
Q Consensus 517 ~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~ 574 (820)
.|.++ . .....+.++++++.++.++.++. ||+|+..+..+.+.+..
T Consensus 251 aiL~k-----k-----a~~~~~~i~~ev~~~la~~~~~n--vReLegaL~~l~~~a~~ 296 (408)
T COG0593 251 AILRK-----K-----AEDRGIEIPDEVLEFLAKRLDRN--VRELEGALNRLDAFALF 296 (408)
T ss_pred HHHHH-----H-----HHHCCCCCCHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHH
T ss_conf 99999-----9-----98658888879999999970030--99999999999999985
No 194
>KOG1514 consensus
Probab=98.03 E-value=0.00054 Score=49.09 Aligned_cols=181 Identities=24% Similarity=0.389 Sum_probs=120.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC--------CCEEEEECCCCCCH----------HHHCCCCCCCCCCCCHHHH
Q ss_conf 44673599860565650279999997708--------82499861888888----------8835632001456712899
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG--------RQYVRMSLGGVYDE----------ADIRGHRRTYIGSMPGRII 424 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~--------r~f~~islgg~~d~----------~~i~gh~~ty~ga~pg~ii 424 (820)
..-|.++-..|-||+|||-....+-+.|. ++|..+-+.|++=. ..+-|||-|..-||
T Consensus 419 ~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al----- 493 (767)
T KOG1514 419 QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAAL----- 493 (767)
T ss_pred CCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCCHHHHH-----
T ss_conf 777407998469998832129999999998775057898607987144615889999999997555743077889-----
Q ss_pred HHHH------HCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHH
Q ss_conf 9998------3278873999933155423117711556655406001681332010352364427999934865544131
Q gi|254780270|r 425 QSLK------RAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPL 498 (820)
Q Consensus 425 ~~l~------~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l 498 (820)
++|. +.+-.-.|+|+||+|-+-...+ ..|..++|= .-.-=|+...||-||+.+.|+-+
T Consensus 494 ~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q----dVlYn~fdW------------pt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514 494 EALNFRFTVPKPKRSTTVVLIDELDILVTRSQ----DVLYNIFDW------------PTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCHHHHHCCCH----HHHHHHHCC------------CCCCCCCEEEEEECCCCCCHHHH
T ss_conf 99986541678787877999635787735209----889777407------------76789866999951656477988
Q ss_pred CC-----C--EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 17-----2--4799825878689998999860898998625781313228999999973177410234788879999898
Q gi|254780270|r 499 MD-----R--MEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARK 571 (820)
Q Consensus 499 ~d-----r--me~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~ 571 (820)
+- | .-.|.+.+||.++--+|...- |+.. -.|.++|++.+-.+-+.=+| ...| --.|||.
T Consensus 558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~R----------L~~~-~~f~~~aielvarkVAavSG--DaRr-aldic~R 623 (767)
T KOG1514 558 LMNRVSSRLGLTRICFQPYTHEQLQEIISAR----------LKGL-DAFENKAIELVARKVAAVSG--DARR-ALDICRR 623 (767)
T ss_pred HCCCHHHHCCCEEEECCCCCHHHHHHHHHHH----------CCCH-HHCCHHHHHHHHHHHHHCCC--CHHH-HHHHHHH
T ss_conf 5431123306505513778899999999986----------0315-43142489999988775042--2788-8899899
Q ss_pred HHHHHHCC
Q ss_conf 76542117
Q gi|254780270|r 572 AVTKIVKN 579 (820)
Q Consensus 572 ~~~~~~~~ 579 (820)
++ ++.+.
T Consensus 624 A~-Eia~~ 630 (767)
T KOG1514 624 AA-EIAEE 630 (767)
T ss_pred HH-HHHHH
T ss_conf 99-97542
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.02 E-value=0.00011 Score=54.36 Aligned_cols=295 Identities=24% Similarity=0.396 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-----------CCEEEEECCCCCCHHHHCCC
Q ss_conf 1168999999999999842444673599860565650279999997708-----------82499861888888883563
Q gi|254780270|r 343 GLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG-----------RQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 343 Gl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~-----------r~f~~islgg~~d~~~i~gh 411 (820)
|=|+.=||.|+-|+ |..+++. .|||-||||||.|+...|...- -+-+..+||.+==.+
T Consensus 212 GRE~EleRtiQvLC-RR~KNNP-----l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGT----- 280 (774)
T TIGR02639 212 GREDELERTIQVLC-RRKKNNP-----LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGT----- 280 (774)
T ss_pred CCHHHHHHHHHHHC-CCCCCCC-----CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHC-----
T ss_conf 56688742333203-4567887-----204488864489999999986415646700247834540434564102-----
Q ss_pred CCCCCCCCCHHHHHHHHH-CCCCCE-EEEEECHHHH-HH--HCCC--CHHHHHHH-HCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 200145671289999983-278873-9999331554-23--1177--11556655-406001681332010352364427
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKR-AKRSNP-LLLLDEIDKM-GS--DLRG--DPSAALLE-VLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~-~~~~np-v~~ldeidk~-~~--~~~g--dp~~alle-vldp~qn~~f~d~y~~~~~dls~v 483 (820)
=|-|=--.||=+-+.. .++.|+ |.++|||--| |. +--| | ||=||- +|-. .++
T Consensus 281 --KYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmD-ASNLLKPaL~~-----------------G~i 340 (774)
T TIGR02639 281 --KYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMD-ASNLLKPALAS-----------------GKI 340 (774)
T ss_pred --CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHH-HHHHHHHHHHC-----------------CCE
T ss_conf --4542478999999999852899954664110103317878751552-44321125307-----------------877
Q ss_pred EEE--EECCC---C-CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CC--
Q ss_conf 999--93486---5-5441311724799825878689998999860898998625781313228999999973---17--
Q gi|254780270|r 484 MFI--MTANT---L-NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR---LF-- 552 (820)
Q Consensus 484 ~fi--~tan~---~-~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~---~Y-- 552 (820)
=|| +|+.- . +-+.||-=|.-=|+++=-|.+|=++|-+. |..+.|++ -+|+.+++||+.-++ .|
T Consensus 341 RCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkG--Lk~~YE~f----H~V~Y~~eal~~Av~LS~ryI~ 414 (774)
T TIGR02639 341 RCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKG--LKEQYEEF----HHVKYSDEALEAAVELSARYIN 414 (774)
T ss_pred EEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHH--HHHHHHCC----CCEECCHHHHHHHHHHHHHHCC
T ss_conf 86226524864111010202165423311795788899999986--55420132----5011386999999999888602
Q ss_pred -------------------------C----------------CCCHHHHHHHHHHHHHHHHHHHH--------HC-----
Q ss_conf -------------------------7----------------41023478887999989876542--------11-----
Q gi|254780270|r 553 -------------------------T----------------HEAGVRSFERALMKIARKAVTKI--------VK----- 578 (820)
Q Consensus 553 -------------------------t----------------~EaGvR~l~r~i~~i~r~~~~~~--------~~----- 578 (820)
+ -|-+|++.|+.|+++|+-=...+ ++
T Consensus 415 DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~~~L~~L~~~ 494 (774)
T TIGR02639 415 DRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREKLKNLEKE 494 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
T ss_conf 57898543228899999999712027764320112530004787854449999988718994154264479887204476
Q ss_pred ---------------------------CCCCEE---------CCC----HHHHHHHHCCC--CCCCCCHHC--------C
Q ss_conf ---------------------------785201---------279----67867530520--003320002--------2
Q gi|254780270|r 579 ---------------------------NSDTTV---------SIN----ENNLQDYLGVP--RYKYGKIEG--------E 608 (820)
Q Consensus 579 ---------------------------~~~~~~---------~i~----~~~l~~~lg~~--~~~~~~~~~--------~ 608 (820)
++.+|+ =|. .+.|.+.||.+ ||+..-..+ .
T Consensus 495 L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmEKHTVsRLIG 574 (774)
T TIGR02639 495 LKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIG 574 (774)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHC
T ss_conf 30131515899999999999987424778881688886479896257889999997082001046504468999987416
Q ss_pred CCCCCCCEEEECCCC---CEEEEEEEE-EEC-------------------------------CCCC--------EEECCC
Q ss_conf 336500000000016---807999999-974-------------------------------8997--------244325
Q gi|254780270|r 609 DQVGIVTGLAWTEVG---GEILTVEGV-IMP-------------------------------GKGE--------ITITGN 645 (820)
Q Consensus 609 ~~~G~v~GLa~t~~G---G~~l~IE~~-~~~-------------------------------g~g~--------l~lTG~ 645 (820)
++||. +| |+.|. ||+ ++| .+|+ |+.|=|
T Consensus 575 sPPGY--------VGfEqGGLLT-~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVILIMTSN 645 (774)
T TIGR02639 575 SPPGY--------VGFEQGGLLT-DAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSN 645 (774)
T ss_pred CCCCC--------CCCCCCCCCH-HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCC
T ss_conf 88885--------1316777212-23312885354234666631336667876633543405888576311368884037
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HCCCCHHHHHHCCCEEECC
Q ss_conf 689999999999999999888-------6299855742078147448
Q gi|254780270|r 646 LKEIMKESILAASSYVRSKAT-------TFGIIPSAFNEINIHVHVP 685 (820)
Q Consensus 646 lg~vmkES~~~A~s~~k~~~~-------~~~~~~~~~~~~diHih~p 685 (820)
.| .+|.++..+.|...... +---.|+|-.+-|==|||-
T Consensus 646 aG--a~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~ 690 (774)
T TIGR02639 646 AG--AREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFN 690 (774)
T ss_pred CC--CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECC
T ss_conf 00--1023677644255541233488897315874201334644169
No 196
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.97 E-value=0.00015 Score=53.21 Aligned_cols=88 Identities=24% Similarity=0.452 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 67359986056565027999999770882---499861888888883563200145671289999983278873999933
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
++.=++|+||||||||.||-+||..|-+. ...+..... -.+++.-+.- |....++...|+++ +|.+|||
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el--~~~Lk~~~~~--~~~~~~l~~~l~~~----dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL--LSKLKAAFDE--GRLEEKLLRELKKV----DLLIIDD 175 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHHHHHHC--CCHHHHHHHHHHHC----CEEEEEC
T ss_conf 58828998999987999999999999983984999885999--9999998745--52689999887528----9899823
Q ss_pred HHHHHHHCCCCHHHHHHHHCC
Q ss_conf 155423117711556655406
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLD 462 (820)
Q Consensus 442 idk~~~~~~gdp~~allevld 462 (820)
|-....+.. .++-++++++
T Consensus 176 lG~~~~~~~--~~~~~~q~I~ 194 (254)
T COG1484 176 IGYEPFSQE--EADLLFQLIS 194 (254)
T ss_pred CCCCCCCCH--HHHHHHHHHH
T ss_conf 677668815--5879999999
No 197
>PRK13695 putative NTPase; Provisional
Probab=97.95 E-value=1.4e-05 Score=61.15 Aligned_cols=94 Identities=30% Similarity=0.443 Sum_probs=60.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC------E--------------EEEEC-CCCCCH-------HHHC-CCCCCCCCC
Q ss_conf 59986056565027999999770882------4--------------99861-888888-------8835-632001456
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQ------Y--------------VRMSL-GGVYDE-------ADIR-GHRRTYIGS 418 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~------f--------------~~isl-gg~~d~-------~~i~-gh~~ty~ga 418 (820)
-+.+.||||||||+|.+-|.+.|... | .-+++ +|-+.. +..| |.-..++.+
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~~~ 84 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNLED 84 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHHH
T ss_conf 99987899988999999999998636961746995256038828505999905885687675378898554566871689
Q ss_pred CCHHHHHHHHHCCCCCEEEEEECHHHH---HHHCCCCHHHHHHHHCCCCC
Q ss_conf 712899999832788739999331554---23117711556655406001
Q gi|254780270|r 419 MPGRIIQSLKRAKRSNPLLLLDEIDKM---GSDLRGDPSAALLEVLDPAQ 465 (820)
Q Consensus 419 ~pg~ii~~l~~~~~~npv~~ldeidk~---~~~~~gdp~~allevldp~q 465 (820)
.-...+.+|.+|-...-++++|||.|| |..| ..|+.++||+..
T Consensus 85 ~e~~~~~~l~~a~~~~dlivIDEIG~MEl~s~~F----~~~V~~~L~s~k 130 (174)
T PRK13695 85 LERIAIPAISRALREADLIIIDEIGPMELKSKKF----VSAVEEVLKSEK 130 (174)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH----HHHHHHHHCCCC
T ss_conf 7899899998353578799996310331104999----999999973899
No 198
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=6.7e-05 Score=55.95 Aligned_cols=162 Identities=15% Similarity=0.214 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE--EEEECCCCCCHHHH--CCCC-CCCCCC
Q ss_conf 168999999999999842444673599860565650279999997708824--99861888888883--5632-001456
Q gi|254780270|r 344 LEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY--VRMSLGGVYDEADI--RGHR-RTYIGS 418 (820)
Q Consensus 344 l~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f--~~islgg~~d~~~i--~gh~-~ty~ga 418 (820)
+.+.-.+|++++ ...+..+.-+....|.| |+||+.+|+.+|++|.-.- -..+.|-.+.-.-| ..|. -+++..
T Consensus 3 ~~~~Qp~i~~~l-~~~i~~~rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~ 79 (290)
T PRK07276 3 LAQKQPKLFQRF-QTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEP 79 (290)
T ss_pred HHHHHHHHHHHH-HHHHHCCCCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECC
T ss_conf 778789999999-99998499650542169--868799999999998189999989898899999987699987137716
Q ss_pred CCHH--------HHHHHHHCC--CCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEE
Q ss_conf 7128--------999998327--887399993315542311771155665540600168133201035236442799993
Q gi|254780270|r 419 MPGR--------IIQSLKRAK--RSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMT 488 (820)
Q Consensus 419 ~pg~--------ii~~l~~~~--~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~t 488 (820)
..-. +++.+.... ...-|+++|+.|||+.. .++|||-.|. -|- ++++||..
T Consensus 80 ~~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~----AaNaLLK~LE-------------EPp--~~t~~iLl 140 (290)
T PRK07276 80 QGQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVN----AANSLLKVIE-------------EPQ--SEIYIFLL 140 (290)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHH----HHHHHHHHHC-------------CCC--CCCEEEEE
T ss_conf 7775768899999999844561378279997765652999----9999999703-------------898--88379988
Q ss_pred CCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 48655-44131172479982587868999899986089899862578131
Q gi|254780270|r 489 ANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEE 537 (820)
Q Consensus 489 an~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~ 537 (820)
+++.+ +++..+.|--+|+++. ..+ ++ -+.+++.|+.+.+
T Consensus 141 t~~~~~lLpTI~SRCQ~i~fp~-~~~--------~l-~~~l~~~gi~~~~ 180 (290)
T PRK07276 141 TNDENKVLPTIKSRTQIFHFPK-NEA--------YL-YQLLEEKGLLKTQ 180 (290)
T ss_pred ECCHHHCCHHHHHCCCCCCCCC-CHH--------HH-HHHHHHCCCCHHH
T ss_conf 7992549378873660102899-679--------99-9999986998679
No 199
>KOG2227 consensus
Probab=97.94 E-value=0.00084 Score=47.61 Aligned_cols=210 Identities=20% Similarity=0.309 Sum_probs=112.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCC--CHHH-----------HCCCCCCCCCCCCHHHHHHH
Q ss_conf 467359986056565027999999770---8824998618888--8888-----------35632001456712899999
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVY--DEAD-----------IRGHRRTYIGSMPGRIIQSL 427 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~--d~~~-----------i~gh~~ty~ga~pg~ii~~l 427 (820)
.++--|-..|-||+|||-.-.-+-..+ .+.|+++++.-+. -..- ..+-..| | +|-+
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~------~--~~~~ 244 (529)
T KOG2227 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGT------G--MQHL 244 (529)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCH------H--HHHH
T ss_conf 6676457517998654889999987403431665169985123542588999998889887428950------4--7899
Q ss_pred HH-----CCCCCE-EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHH----
Q ss_conf 83-----278873-99993315542311771155665540600168133201035236442799993486554413----
Q gi|254780270|r 428 KR-----AKRSNP-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLP---- 497 (820)
Q Consensus 428 ~~-----~~~~np-v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~---- 497 (820)
.+ .+..+| |++|||+|-+...-++ +|+++.- | -.+-.|+.+.|--||+++.-.-
T Consensus 245 ~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----vLy~lFe------w------p~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227 245 EKFEKHTKQSKFMLLLVLDEMDHLITRSQT----VLYTLFE------W------PKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHCCCC----EEEEEHH------C------CCCCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf 999998752563389872125677604653----1432100------1------36776605666400135577777666
Q ss_pred HCCCE----EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11724----79982587868999899986089899862578131322899999997317741023478887999989876
Q gi|254780270|r 498 LMDRM----EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAV 573 (820)
Q Consensus 498 l~drm----e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~ 573 (820)
|.-|. .++.+++||.++-++|.+.-|- ......|-+.|++..+..-.--+| +| |..-.|||. |
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~---------~~~t~~~~~~Aie~~ArKvaa~SG--Dl-RkaLdv~R~-a 375 (529)
T KOG2227 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLS---------EESTSIFLNAAIELCARKVAAPSG--DL-RKALDVCRR-A 375 (529)
T ss_pred HHHCCCCCCCEEEECCCCHHHHHHHHHHHHH---------CCCCCCCCHHHHHHHHHHHCCCCH--HH-HHHHHHHHH-H
T ss_conf 5402578874665568788999999999974---------054433303899999998625761--28-999999987-8
Q ss_pred HHHHCCCCCEECCCHHHHHHHHCCCCCCCCCHHCC-CCCCCCCEEEECC
Q ss_conf 54211785201279678675305200033200022-3365000000000
Q gi|254780270|r 574 TKIVKNSDTTVSINENNLQDYLGVPRYKYGKIEGE-DQVGIVTGLAWTE 621 (820)
Q Consensus 574 ~~~~~~~~~~~~i~~~~l~~~lg~~~~~~~~~~~~-~~~G~v~GLa~t~ 621 (820)
.++++-+..... .+ +. ..-..+.+ .+||+..+.++.+
T Consensus 376 iEI~E~e~r~~~------~~----~l-~~~~~p~~~~~v~~~~va~viS 413 (529)
T KOG2227 376 IEIAEIEKRKIL------DD----PL-SPGTSPEKKKKVGVEHVAAVIS 413 (529)
T ss_pred HHHHHHHHHHCC------CC----CC-CCCCCCCCCCCCCHHHHHHHHH
T ss_conf 899999874134------46----78-8888855455500678998840
No 200
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00033 Score=50.73 Aligned_cols=151 Identities=28% Similarity=0.401 Sum_probs=121.0
Q ss_pred CEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 80799999997489972443256899999999999999998886299855742078147448888478887306899999
Q gi|254780270|r 624 GEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATA 703 (820)
Q Consensus 624 G~~l~IE~~~~~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~ta 703 (820)
+..+.||+...+|...+.+-|.-..-||||-. -||+-...-+. .|...-|-|+.-=...||.|+.=...|+.+
T Consensus 2 a~~V~VEv~~s~glp~~~iVGL~d~av~Esre----RVraal~nsgf---~~P~~ritiNLaPadl~KeG~~fDLpIal~ 74 (490)
T COG0606 2 APPVEVEVDISNGLPGFTIVGLPDTAVKESRE----RVRAALTNSGF---EFPAKRITINLAPADLPKEGSRFDLPIALG 74 (490)
T ss_pred CCCCCEEEEECCCCCCCEEEECCCHHHHHHHH----HHHHHHHHCCC---CCCHHHEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 97422388733897650364068177899999----99989874678---887678031157100254465344699999
Q ss_pred HHHHHHCCC--CCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHH
Q ss_conf 999983688--875610663685030250006568999999970996998036775507761488770979998193999
Q gi|254780270|r 704 IVSIMTCIP--VYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGE 781 (820)
Q Consensus 704 l~S~~~~~~--v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~e 781 (820)
++.+.-..| .-.+..+-||++|.|.+.||+|+--=.++|+.-+.+.+++|++|...-.-| .++.+.+++++.|
T Consensus 75 ilaa~~~~~~~~l~~~~~lGEL~LdG~l~~v~G~lp~~~~a~~~~~~~~i~p~~n~~Easli-----~~~~v~~~~~l~e 149 (490)
T COG0606 75 ILAASGQLPADALILYEFLGELSLDGLLRPVGGVLPAALAAKEKGKRGLIVPKENAEEASLI-----GGLPVYGARYLEE 149 (490)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEECCHHCCCCCCCC-----CCCCCCCHHHHHH
T ss_conf 99742666413455577653341167522567711558887531578277241114403445-----8887253302999
Q ss_pred HHHHH
Q ss_conf 88876
Q gi|254780270|r 782 VLKHA 786 (820)
Q Consensus 782 vl~~a 786 (820)
|.++-
T Consensus 150 v~~~l 154 (490)
T COG0606 150 VVNFL 154 (490)
T ss_pred HHHHH
T ss_conf 99986
No 201
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.91 E-value=0.00023 Score=51.81 Aligned_cols=86 Identities=21% Similarity=0.369 Sum_probs=50.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCHHHHCCCCCCCCCC--CCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 73599860565650279999997708---824998618888888835632001456--7128999998327887399993
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYDEADIRGHRRTYIGS--MPGRIIQSLKRAKRSNPLLLLD 440 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d~~~i~gh~~ty~ga--~pg~ii~~l~~~~~~npv~~ld 440 (820)
..-|.|.||||||||.||-+||++|= .+...++...+ +.--+.||-.+ ..-.++..+. .-++.+||
T Consensus 96 ~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dL-----l~~lr~t~~~~~~~e~~~l~~l~----~~dLLIiD 166 (242)
T PRK07952 96 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI-----MSAMKDTFRNSETSEEQLLNDLS----NVDLLVID 166 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH-----HHHHHHHHHCCCCCHHHHHHHHH----CCCEEEEE
T ss_conf 8717997899997899999999999987994999779999-----99999998068756999999863----18989873
Q ss_pred CHHHHHHHCCCCHH-HHHHHHCCC
Q ss_conf 31554231177115-566554060
Q gi|254780270|r 441 EIDKMGSDLRGDPS-AALLEVLDP 463 (820)
Q Consensus 441 eidk~~~~~~gdp~-~allevldp 463 (820)
|+..-.. -+.+ ..|-+++|-
T Consensus 167 dlG~e~~---t~~~~~~lf~iId~ 187 (242)
T PRK07952 167 EIGVQTE---SRYEKVIINQIVDR 187 (242)
T ss_pred CCCCCCC---CHHHHHHHHHHHHH
T ss_conf 0146658---88899999999999
No 202
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=97.90 E-value=0.00011 Score=54.36 Aligned_cols=144 Identities=23% Similarity=0.317 Sum_probs=90.9
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC------------------------EEEEECCCCC-----CHH--
Q ss_conf 984244467359986056565027999999770882------------------------4998618888-----888--
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ------------------------YVRMSLGGVY-----DEA-- 406 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~------------------------f~~islgg~~-----d~~-- 406 (820)
..+..+.-+.-++|.||+|+||..+|..+|++|-=. |.+|.==|.. |++
T Consensus 6 ~~~~~~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~ 85 (216)
T TIGR00678 6 RALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAE 85 (216)
T ss_pred HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 89860678861254448887489999999999807785778888858889998707998237874234777777645897
Q ss_pred -HHCC----CCCCCCCCCCH-HHHHHHHHCC--CCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf -8356----32001456712-8999998327--88739999331554231177115566554060016813320103523
Q gi|254780270|r 407 -DIRG----HRRTYIGSMPG-RIIQSLKRAK--RSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 407 -~i~g----h~~ty~ga~pg-~ii~~l~~~~--~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~ 478 (820)
+. | --+++|+--== -+++-+-+.. ...=|++||.-|+|+.. -|+|||-+| |-|=
T Consensus 86 ~~~-g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~----AANALLKtL-------------EEPp 147 (216)
T TIGR00678 86 GEE-GSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEA----AANALLKTL-------------EEPP 147 (216)
T ss_pred HHC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHH----HHHHHHHHE-------------ECCC
T ss_conf 625-6421136787872789999999860642147517997673232589----898651010-------------1279
Q ss_pred CCCCEEEEEECCCC--C-CCHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 64427999934865--5-4413117247998258786899989998
Q gi|254780270|r 479 DLSDVMFIMTANTL--N-IPLPLMDRMEIIRIAGYTEEEKLQIAKN 521 (820)
Q Consensus 479 dls~v~fi~tan~~--~-i~~~l~drme~i~~~~y~~~ek~~i~~~ 521 (820)
.+++||..+++. + |-+.++.|=-++.++.-+.++=.++-.+
T Consensus 148 --~~t~fiL~~~~~DP~~lLpTI~SRCq~~~f~~l~~~~~~~~L~~ 191 (216)
T TIGR00678 148 --PNTLFILITHSPDPERLLPTIRSRCQVLPFPPLSEEALLQWLIE 191 (216)
T ss_pred --CCEEEEEECCCCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf --87079885088884332211103201586259988999999997
No 203
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=7.8e-05 Score=55.45 Aligned_cols=134 Identities=22% Similarity=0.331 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EE-EEECCCCCCHHHH-C-CCCCC-CCCC-----CCHH-----HHHHH
Q ss_conf 467359986056565027999999770882--49-9861888888883-5-63200-1456-----7128-----99999
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ--YV-RMSLGGVYDEADI-R-GHRRT-YIGS-----MPGR-----IIQSL 427 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~--f~-~islgg~~d~~~i-~-gh~~t-y~ga-----~pg~-----ii~~l 427 (820)
.-+--+.|.||.|+||+++|+.+|++|-=. .. -.+.|-..+=.-+ . .|--- ++.. --|+ =|..+
T Consensus 19 rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idqi 98 (325)
T PRK08699 19 RRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDAV 98 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 50117975799997899999999999828999888998988888999865999996885134453001665566769999
Q ss_pred HH---------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCH
Q ss_conf 83---------27887399993315542311771155665540-60016813320103523644279999348655-441
Q gi|254780270|r 428 KR---------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPL 496 (820)
Q Consensus 428 ~~---------~~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~ 496 (820)
+. .....=|+++|+.|+|+. .-++|||..| .|. ++++||.+++..+ +++
T Consensus 99 R~l~~~~~~~~~~~~~kV~ii~~ae~mn~----~aaNaLLK~LEEPp----------------~~~~fiL~t~~~~~llp 158 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNV----QAANSLLKVLEEPP----------------PQVVFLLVSHAADKVLP 158 (325)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCHHHHCH----HHHHHHHHHHCCCC----------------CCEEEEEEECCHHHCCC
T ss_conf 99999971086568946999857777589----99999999841788----------------88489998798464623
Q ss_pred HHCCCEEEEEECCCCHHHHHH
Q ss_conf 311724799825878689998
Q gi|254780270|r 497 PLMDRMEIIRIAGYTEEEKLQ 517 (820)
Q Consensus 497 ~l~drme~i~~~~y~~~ek~~ 517 (820)
.++.|--.+.++.-+.++-..
T Consensus 159 TI~SRc~~~~~~~p~~~~~~~ 179 (325)
T PRK08699 159 TIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHCCCCCCCCCCCHHHHHH
T ss_conf 398645421089959999999
No 204
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=97.90 E-value=0.0014 Score=45.92 Aligned_cols=178 Identities=21% Similarity=0.308 Sum_probs=118.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCHHHHCCCCCCC
Q ss_conf 65201168999999999999842444673599860565650279999997708---824998618888888835632001
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYDEADIRGHRRTY 415 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d~~~i~gh~~ty 415 (820)
++-.|.++-|+.+++-. ........+.-.+|.|.-|+||+|+.|++..... ...+.|+-. .
T Consensus 28 ~~L~Gie~Qk~~l~~NT--~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~--------------~ 91 (248)
T pfam05673 28 DDLVGIDRQKEALLRNT--EQFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKD--------------D 91 (248)
T ss_pred HHHCCHHHHHHHHHHHH--HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHH--------------H
T ss_conf 89349399999999999--9998089861367676898988899999999863149569998788--------------8
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCH-HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-
Q ss_conf 45671289999983278873999933155423117711-5566554060016813320103523644279999348655-
Q gi|254780270|r 416 IGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDP-SAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN- 493 (820)
Q Consensus 416 ~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp-~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~- 493 (820)
++.+| .|+..|+... ..=++++|.+ |-+ .+|+ +.+|--+||-. +.-.-++|+|-+|.|--+
T Consensus 92 L~~Lp-~i~~~l~~~~-~kFIiF~DDL---SFe-~~d~~yk~LKs~LeG~-----------l~~~p~NvliYaTSNRRHL 154 (248)
T pfam05673 92 LGDLP-DIVDLLRGRP-YRFILFCDDL---SFE-EGESSYKALKSVLEGG-----------LEARPDNVLIYATSNRRHL 154 (248)
T ss_pred HCCHH-HHHHHHHCCC-CCEEEEECCC---CCC-CCCHHHHHHHHHHCCC-----------CCCCCCEEEEEEECCCHHC
T ss_conf 72199-9999996499-7579996355---767-8973699999996576-----------4468873899984270003
Q ss_pred CCHHHCCCEEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 4413117247998-2587868999899986089899862578131322899999997317741023
Q gi|254780270|r 494 IPLPLMDRMEIIR-IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558 (820)
Q Consensus 494 i~~~l~drme~i~-~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv 558 (820)
||.-..||..-=+ -++=+.+||+..+-+| ||.-.--.++.+.-..|+++|...-|+
T Consensus 155 i~e~~~d~~~~~ei~~~d~~eEklSLsDRF---------GL~l~F~~~~q~~YL~IV~~~~~~~~~ 211 (248)
T pfam05673 155 IPEYMSDNEGDGEIHPGDAVEEKLSLSDRF---------GLWLGFHPFDQDEYLAIVRGYAARLGL 211 (248)
T ss_pred CCHHHCCCCCCCCCCCCHHHHHHHHHHHHC---------CEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 633323477744367255777453489867---------717850799999999999999998299
No 205
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=97.89 E-value=0.00036 Score=50.42 Aligned_cols=112 Identities=26% Similarity=0.384 Sum_probs=63.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE----ECCCCCCHH---HHCCCCCCCCCCCCHHHHH--------
Q ss_conf 2444673599860565650279999997708824998----618888888---8356320014567128999--------
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM----SLGGVYDEA---DIRGHRRTYIGSMPGRIIQ-------- 425 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~i----slgg~~d~~---~i~gh~~ty~ga~pg~ii~-------- 425 (820)
.+..+..||.|.||||+|||+..+-+|+.||-....- +.++...+. +.+|..-++--+.--.+-.
T Consensus 40 ~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky 119 (490)
T pfam03215 40 LESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARY 119 (490)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 47777318998798998899999999997596899814865456775022101212345766663777767887622335
Q ss_pred -HHHHCCCCCEEEEEECHHHHHHHCCCCHH---HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEC
Q ss_conf -99832788739999331554231177115---56655406001681332010352364427999934
Q gi|254780270|r 426 -SLKRAKRSNPLLLLDEIDKMGSDLRGDPS---AALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTA 489 (820)
Q Consensus 426 -~l~~~~~~npv~~ldeidk~~~~~~gdp~---~allevldp~qn~~f~d~y~~~~~dls~v~fi~ta 489 (820)
.|...+..--|||++|+. ..+.+|+. .+|++.|-..+. +-+.||.|-
T Consensus 120 ~sL~~~~~~kriILIEE~P---n~~~~d~~~fr~~L~~~L~s~~~--------------~PlV~IiSE 170 (490)
T pfam03215 120 GSLQGGGLKKKLILVEELP---NQFYSDAEKFREVIREVLQSIWH--------------LPLIFCLTE 170 (490)
T ss_pred CCCCCCCCCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHCCC--------------CCEEEEEEE
T ss_conf 6544578873599996588---74423669999999999970899--------------987999970
No 206
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.89 E-value=0.00064 Score=48.52 Aligned_cols=191 Identities=14% Similarity=0.212 Sum_probs=117.3
Q ss_pred HHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHH--CCCEEEEECC--------CCCCHHHHC-CCCCCCCCCCCHHH
Q ss_conf 99984244-467359986056565027999999770--8824998618--------888888835-63200145671289
Q gi|254780270|r 356 AVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKAT--GRQYVRMSLG--------GVYDEADIR-GHRRTYIGSMPGRI 423 (820)
Q Consensus 356 av~~~~~~-~~g~il~l~gppgvGKts~~~sia~al--~r~f~~islg--------g~~d~~~i~-gh~~ty~ga~pg~i 423 (820)
.+...+|. ..| +++-|++|++|.++.+.++.-| +.||+++.+| |+.=++-++ |++.. .||-+
T Consensus 16 ~L~aidP~glGG--vlirg~~Gtakst~~r~l~~llp~~~p~~~lPl~~tedrl~G~lDi~~tL~~G~~v~----~~GLL 89 (584)
T PRK13406 16 ALFAVDPAGLGG--VVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVA----ERGLL 89 (584)
T ss_pred HHHCCCCCCCCC--EEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCCHHHHHHCCCEEC----CCCHH
T ss_conf 984848666551--899779995799999999975689998465699997415147125999997689852----57533
Q ss_pred HHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--C--CCHHHC
Q ss_conf 999983278873999933155423117711556655406001681332010352364427999934865--5--441311
Q gi|254780270|r 424 IQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--N--IPLPLM 499 (820)
Q Consensus 424 i~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~--i~~~l~ 499 (820)
+++.+.|+++||+..+..+. .+.||.++|--.|.-=+|-- .+.. -++..+|+|.|.. + .|+.|+
T Consensus 90 ------a~A~~gvLyvdevnll~d~l----v~~Ll~a~~~G~~~vEReGi-S~~~-parf~LIa~deg~e~de~~~~~l~ 157 (584)
T PRK13406 90 ------AEADGGVLVLAMAERLEPGT----AARLAAALDAGEVAIERDGL-ALRM-PARFGLVALDEGAEEDERAPAALA 157 (584)
T ss_pred ------HCCCCCEEEEECHHHCCHHH----HHHHHHHHHCCCCCCCCCCC-CCCC-CCEEEEEEECCCCCCCCCHHHHHH
T ss_conf ------30369989985147378889----99999998548740025876-6356-650589994678876431107888
Q ss_pred CCEEE-EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 72479-9825878689998999860898998625781313228999999973177410234788879999
Q gi|254780270|r 500 DRMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKI 568 (820)
Q Consensus 500 drme~-i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i 568 (820)
||+-. +.+.+....+.-.- -..+..+...--.-.+|.++++.+.++..- +...||-.+.-.|..+
T Consensus 158 dRla~~vd~~~~~~~~~~~~---~~~~~~i~~Ar~~L~~V~i~d~~~~~l~~~-a~~~gv~g~Ra~i~~~ 223 (584)
T PRK13406 158 DRLAFHLDLDGLALRDTREF---PIDADDIAAARARLAAVRVPPEAIEALCAA-AAALGIASLRAPLLAL 223 (584)
T ss_pred HHHCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHHCCCCCCHHHHHH
T ss_conf 76507068167666640111---123689999998678666699999999999-9983998620999999
No 207
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=97.87 E-value=0.00029 Score=51.08 Aligned_cols=181 Identities=24% Similarity=0.392 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-------------------------------
Q ss_conf 1168999999999999842444673599860565650279999997708-------------------------------
Q gi|254780270|r 343 GLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG------------------------------- 391 (820)
Q Consensus 343 Gl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~------------------------------- 391 (820)
|.|+.|.=.| +...+|+..|=+ .-|.=||||++.|+|++.-|=
T Consensus 8 GQe~LK~ALL----L~Av~P~iGGVL--irG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~~~~~~~ 81 (688)
T TIGR02442 8 GQEDLKLALL----LNAVNPRIGGVL--IRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECRRKLEEQ 81 (688)
T ss_pred CHHHHHHHHH----HEEECCCCCEEE--EECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 4279865321----002526637078--8778886278988848761602366404788877788704006767555204
Q ss_pred ---------CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH----------CCCCCEEEEEECHHHHHHHCCCC
Q ss_conf ---------82499861888888883563200145671289999983----------27887399993315542311771
Q gi|254780270|r 392 ---------RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKR----------AKRSNPLLLLDEIDKMGSDLRGD 452 (820)
Q Consensus 392 ---------r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~----------~~~~npv~~ldeidk~~~~~~gd 452 (820)
-+||-+.||=..| =-||++= |=++|+. |+..+.|+|+|||-=
T Consensus 82 G~~~~~~~~~~~V~LPlgATED---------RVvG~LD--i~~al~~G~~~FqPGLLA~AhrGiLYiDEVNL-------- 142 (688)
T TIGR02442 82 GTLPSEQRPVPFVNLPLGATED---------RVVGSLD--IERALKEGEKAFQPGLLAEAHRGILYIDEVNL-------- 142 (688)
T ss_pred CCCCCCCCCCEEEECCCCCCHH---------HHCCHHH--HHHHHHHCHHHHCCCCHHHHCCCEEEEEEECC--------
T ss_conf 7753135873588658775233---------2213054--89998718566078861754687167852001--------
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCC------------------CCCEEEEEECCCCC--CCHHHCCCEE-EEEECCC-
Q ss_conf 155665540600168133201035236------------------44279999348655--4413117247-9982587-
Q gi|254780270|r 453 PSAALLEVLDPAQNSSFVDHYLEVEYD------------------LSDVMFIMTANTLN--IPLPLMDRME-IIRIAGY- 510 (820)
Q Consensus 453 p~~allevldp~qn~~f~d~y~~~~~d------------------ls~v~fi~tan~~~--i~~~l~drme-~i~~~~y- 510 (820)
+.|||+|+=.| =|..+-|.|+|-.. .=+=|+||+= .|++.+-
T Consensus 143 ----------------LdDhlVD~lLDaaA~G~n~VEREG~S~~Hparf~L~GTMNPEEG~LRPQLLDRFGL~V~v~~~~ 206 (688)
T TIGR02442 143 ----------------LDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAASR 206 (688)
T ss_pred ----------------CCCHHHHHHHHHHHCCCEEEEECCCCHHCHHHHHHHCCCCCCHHHHCHHHHHHHHCEEEECCCC
T ss_conf ----------------4414778999987648006763574300114553220378522110223242440115502435
Q ss_pred CHHHHHHHHHHHHHH--------------------HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 868999899986089--------------------89986257813132289999999731774102347888799
Q gi|254780270|r 511 TEEEKLQIAKNHLVK--------------------KVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALM 566 (820)
Q Consensus 511 ~~~ek~~i~~~~l~p--------------------~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~ 566 (820)
..++.++|.++=|-= ++..-=.+ =..|.|+|+.+.+| ..-|++.||....=.|.
T Consensus 207 d~~~R~Ev~~Rrl~~d~dP~~F~~~~~~~~~~L~~~I~~AR~l-Lp~V~l~d~~~~~I-~~lc~~~~V~GhRAdi~ 280 (688)
T TIGR02442 207 DPEERVEVIRRRLAFDADPEAFAARWAAEQEELRERIAAARSL-LPSVRLSDSLLRFI-SELCIEFGVDGHRADIV 280 (688)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHH-HHHHHHCCCCCCHHHHH
T ss_conf 8668999999997540267788999999999999999999975-47765888999999-99999728885259999
No 208
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.85 E-value=4.9e-05 Score=56.97 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=51.0
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 53110257899999876540415876632210688998776652011689999999999998424446735998605656
Q gi|254780270|r 298 MNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGV 377 (820)
Q Consensus 298 m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgv 377 (820)
-.+.|||+.++|.+|+-. .... +..|++.+-+.+.. -....+.+-|||+|.+|.
T Consensus 91 ~~~~~~~~~~~~~~l~~~----------~~~~--------------~~~~~~~l~~~~~~--~~~~~~~~rIaLIGlmGa 144 (304)
T PRK08154 91 EDTSSPDWPLIRELLEQA----------TPAQ--------------LARARDALSGMLGT--GGGAARRPRIALIGLRGA 144 (304)
T ss_pred CCCCCHHHHHHHHHHHCC----------CHHH--------------HHHHHHHHHHHHCC--CCCCCCCCCEEEECCCCC
T ss_conf 888881289999998518----------9999--------------99999998763023--766677784798899999
Q ss_pred CHHHHHHHHHHHHCCCEEEEE
Q ss_conf 502799999977088249986
Q gi|254780270|r 378 GKTSLAQSIAKATGRQYVRMS 398 (820)
Q Consensus 378 GKts~~~sia~al~r~f~~is 398 (820)
|||++|+-+|+.||.||+-..
T Consensus 145 GKSTvGr~LA~~Lg~pFvDlD 165 (304)
T PRK08154 145 GKSTLGRMLAARLGVPFVELN 165 (304)
T ss_pred CHHHHHHHHHHHHCCCEEECH
T ss_conf 888999999999598977877
No 209
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.85 E-value=2.7e-05 Score=58.93 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC--HHHHCCCCCC-------
Q ss_conf 1689999999999998424446735998605656502799999977088249986188888--8883563200-------
Q gi|254780270|r 344 LEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD--EADIRGHRRT------- 414 (820)
Q Consensus 344 l~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d--~~~i~gh~~t------- 414 (820)
.++|..|-+.||.+ |.=+-|.||.|+||||||..+|+.++||-+-|. |=++ .+++-|--+-
T Consensus 7 v~~v~~R~l~yL~~--------G~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~--Gd~eL~~~DLvG~~~g~~~~kv~ 76 (265)
T TIGR02640 7 VKRVTSRALRYLKS--------GYPVHLRGPAGTGKTTLAMHVARKRDRPVVLIN--GDAELTTSDLVGSYAGYTRKKVV 76 (265)
T ss_pred HHHHHHHHHHHHCC--------CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 79999987663227--------886674478885568999999973689689986--58232654423154675222232
Q ss_pred --CCCC------------CCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHH--HHHHHHC------CCCCCCCEEEE
Q ss_conf --1456------------712899999832788739999331554231177115--5665540------60016813320
Q gi|254780270|r 415 --YIGS------------MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPS--AALLEVL------DPAQNSSFVDH 472 (820)
Q Consensus 415 --y~ga------------~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~--~allevl------dp~qn~~f~d~ 472 (820)
||-+ .=+|...|.+..= -..-||. .|.-|. +.||-|| =| -+.-.+.
T Consensus 77 DqfihnV~K~~d~~~~~W~D~rLt~Av~eG~----TLVYdEF------~RskP~~nNVLLSvlEE~vL~LP--g~~~~~~ 144 (265)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVREGF----TLVYDEF------TRSKPETNNVLLSVLEEGVLELP--GKRGESR 144 (265)
T ss_pred ECCEEEEECCCCCCCCCCCCCHHHHHHHCCC----EEEECCC------CCCCCHHHHHHHHHHHHHHHCCC--CCCCCCC
T ss_conf 0121113425122002667835789975697----2766475------78862045656755552321588--8787787
Q ss_pred ECCCCCCCCCEEEEEECCCC------CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 10352364427999934865------544131172479982587868999899986089899862578131322899999
Q gi|254780270|r 473 YLEVEYDLSDVMFIMTANTL------NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLL 546 (820)
Q Consensus 473 y~~~~~dls~v~fi~tan~~------~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~ 546 (820)
|+.|-=++= -|+|.|+. +-..+|+||+=.|.++=|=..-.++|+..+ ..+.++-..
T Consensus 145 Yv~VhP~FR---~IfTSNp~EYAGVh~~QDALlDRL~ti~~D~~D~~~e~ai~~~~---------------t~~~~~~a~ 206 (265)
T TIGR02640 145 YVDVHPEFR---VIFTSNPVEYAGVHETQDALLDRLVTISMDYPDEDTETAILRAK---------------TDVAEESAA 206 (265)
T ss_pred CEEECCCCC---EEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---------------HCCCHHHHH
T ss_conf 225788702---46314870105767716677664400457854447899999986---------------061246789
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHC---CCCCEECCCHHHHHH
Q ss_conf 99731774102347---888799998987654211---785201279678675
Q gi|254780270|r 547 DIIRLFTHEAGVRS---FERALMKIARKAVTKIVK---NSDTTVSINENNLQD 593 (820)
Q Consensus 547 ~ii~~Yt~EaGvR~---l~r~i~~i~r~~~~~~~~---~~~~~~~i~~~~l~~ 593 (820)
.||.-- | -+|+ ++..-+-- -++++.+++ ..+-++..+...+.+
T Consensus 207 ~IV~lv-~--~~R~a~g~e~~~Gl~-~RA~lMiA~~at~~dipv~~d~~~f~~ 255 (265)
T TIGR02640 207 TIVRLV-R--ELRLASGDEKTSGLS-LRASLMIAEVATQEDIPVDVDDEDFVD 255 (265)
T ss_pred HHHHHH-H--HHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 999999-9--984212553337436-899999998754437986776025778
No 210
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.0011 Score=46.73 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=90.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHH
Q ss_conf 73599860565650279999997708824998618888888835632001456712899999832788739999331554
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKM 445 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~ 445 (820)
...+.++||+|-|||.|++..++--+-.+ ++ +... +..+. . ...++++|.+|+.
T Consensus 44 ~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~--~~------~~~~-----------~~~~~---~----~~~~~iiddid~~ 97 (214)
T PRK06620 44 KFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IK------DIFF-----------NEEIL---E----KYNAFIIEDIENW 97 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCEE--EC------HHHC-----------CHHHH---H----HCCCEEEECCCCC
T ss_conf 55599987999988999999999828588--15------1214-----------58788---4----3793798467757
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--CCCCHH-HCCC---EEEEEECCCCHHHHHHHH
Q ss_conf 2311771155665540600168133201035236442799993486--554413-1172---479982587868999899
Q gi|254780270|r 446 GSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--LNIPLP-LMDR---MEIIRIAGYTEEEKLQIA 519 (820)
Q Consensus 446 ~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~~i~~~-l~dr---me~i~~~~y~~~ek~~i~ 519 (820)
. ..+|.|+..--+. ++...+.|++. .++.-| |+.| +.++++..-..+.+..+.
T Consensus 98 ~-------e~~lfhlfN~~~~--------------~~~~llits~~~p~~~~L~DL~SRl~~~~~~~i~~PdD~l~~~ll 156 (214)
T PRK06620 98 Q-------EPALLHIFNIINE--------------KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILI 156 (214)
T ss_pred C-------HHHHHHHHHHHHH--------------CCCEEEEEECCCCCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHH
T ss_conf 4-------6799999999971--------------598799982798522453578999854644332698989999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 9860898998625781313228999999973177410234788879999898765421178520127967867530
Q gi|254780270|r 520 KNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 520 ~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
.++ +...++.++++++.||+.+..|. .+.+.+.+..|-+....+ .-.||-..+.+.|
T Consensus 157 ~k~----------~~~r~i~i~~~vi~yl~~ri~Rs--~~~l~~~v~~ld~~sl~~-------kr~Iti~likevL 213 (214)
T PRK06620 157 FKH----------FSISSVTISRQIIDFLLVNLPRE--YSKIIEILENINYFALIS-------KRKITISLVKEVL 213 (214)
T ss_pred HHH----------HHHCCCCCCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHC-------CCCCCHHHHHHHH
T ss_conf 999----------99869988755999999985178--999999999999999983-------9998899999983
No 211
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=97.78 E-value=0.00013 Score=53.76 Aligned_cols=256 Identities=22% Similarity=0.365 Sum_probs=157.5
Q ss_pred CCCHHHHCC--CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 100001012--466550467899985222478857888889999999875311--0257899999876540415876632
Q gi|254780270|r 251 MKAIQKELD--NGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPL--SAESSVVRNYLDWLLGVPWDKKSKT 326 (820)
Q Consensus 251 LKaIqkELG--e~ed~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~--s~E~~v~r~Yld~~~~lPW~~~t~~ 326 (820)
+|||+ || |.-.+.-+.+.|.--++-+ -.....++|=+||++.... |+--+++- .
T Consensus 90 lkAi~--lGAYDFyqKP~d~d~L~liv~RA----f~L~~Le~ENRrL~~~~~~Gst~~~Gli~---------------~- 147 (451)
T TIGR02915 90 LKAIG--LGAYDFYQKPIDPDVLKLIVDRA----FRLYTLETENRRLQSALGGGSTALEGLIT---------------S- 147 (451)
T ss_pred HHHHH--CCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCEEE---------------C-
T ss_conf 99964--37510135787578999999998----88888888769987406887410365220---------------6-
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCC
Q ss_conf 210688998776652011689999999999998424446735998605656502799999977088---24998618888
Q gi|254780270|r 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVY 403 (820)
Q Consensus 327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~ 403 (820)
--||.|+-.. +.|..++- -++| |.|--||||=-+||.|.+.=.| +||-|.++-+=
T Consensus 148 --------------~~~m~kic~t------IekvA~sd-~Tvl-lLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIP 205 (451)
T TIGR02915 148 --------------SPGMQKICRT------IEKVAPSD-ITVL-LLGESGTGKEVLARALHELSDRKDKRFVAINCAAIP 205 (451)
T ss_pred --------------CCCHHHHHHH------HHHHCCCC-CEEE-EECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf --------------8506789888------65212000-0130-104667117899989842057897773444167457
Q ss_pred C---HHHHCCCCCCCCCCCCHHHHHHHHHCCCC-CEEEEEECHHHHHHHCCCCHHHHHHHHC------------------
Q ss_conf 8---88835632001456712899999832788-7399993315542311771155665540------------------
Q gi|254780270|r 404 D---EADIRGHRRTYIGSMPGRIIQSLKRAKRS-NPLLLLDEIDKMGSDLRGDPSAALLEVL------------------ 461 (820)
Q Consensus 404 d---~~~i~gh~~ty~ga~pg~ii~~l~~~~~~-npv~~ldeidk~~~~~~gdp~~allevl------------------ 461 (820)
+ |||+=||=+ ||--|=.=|-+=|..+- ..-++||||--|=-.. .+-||=.|
T Consensus 206 EnLLEsELFGyEK---GAFTGA~k~T~GKIE~A~~GTLFLDEIGDLP~~L----QAKLLRFLQErVIER~GGR~eIPVDV 278 (451)
T TIGR02915 206 ENLLESELFGYEK---GAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNL----QAKLLRFLQERVIERLGGREEIPVDV 278 (451)
T ss_pred CHHHHHHHHCCCC---HHHHHHHCCCCCCEEEECCCCCCCCCHHCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 5246677603410---1242200347761675068830111122067668----99999875466631058872456142
Q ss_pred ----CCCCC-------CCEE-EEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ----60016-------8133-20103523644279999348655441311724799825878689998999860898998
Q gi|254780270|r 462 ----DPAQN-------SSFV-DHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLT 529 (820)
Q Consensus 462 ----dp~qn-------~~f~-d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~ 529 (820)
=..|| .+|+ |=| |-|+.| +++| ||||||- .+=+-+|+-| +.+--.
T Consensus 279 RvvCATnqdL~~~i~eg~FREDLf----YRl~Ei-------si~i-PPLR~R~----------gDa~lLA~~F-l~rf~~ 335 (451)
T TIGR02915 279 RVVCATNQDLKKMIAEGTFREDLF----YRLAEI-------SITI-PPLRDRD----------GDAVLLANAF-LERFAR 335 (451)
T ss_pred EEEECCCHHHHHHHHCCCCCCCCE----EEEEEE-------EEEC-CCCCCCH----------HHHHHHHHHH-HHHHHH
T ss_conf 675032246899985489720001----346667-------8625-8899860----------1899999999-998878
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 625781313228999999973177410234788879999898765421178520127967867
Q gi|254780270|r 530 EHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQ 592 (820)
Q Consensus 530 ~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~ 592 (820)
+ .+...-.||+||+.+ |+.|++=--||+||=+| |.|+-.+++. .||.+||-
T Consensus 336 ~--~k~~~~~F~~DA~~a-le~h~WPGNvRELEN~v-----KRAVIMa~g~----qIt~~DLG 386 (451)
T TIGR02915 336 E--LKRKAKGFTDDALRA-LEAHKWPGNVRELENKV-----KRAVIMAEGN----QITAEDLG 386 (451)
T ss_pred H--HCCCCCCHHHHHHHH-HHCCCCCCCHHHHHCHH-----HEEEEECCCC----CCCHHHCC
T ss_conf 7--330216606999999-76069988415440300-----2134533787----13565488
No 212
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.77 E-value=0.00015 Score=53.35 Aligned_cols=93 Identities=23% Similarity=0.405 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 04678999852224788578888899999998753110257899999876540415876632210688998776652011
Q gi|254780270|r 265 RDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGL 344 (820)
Q Consensus 265 ~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl 344 (820)
......+.+++...+++++....+...+. .-. .+...+++
T Consensus 133 ~~~~~~l~~~L~~~gv~~~~~~~l~~~~~---~~~----~~~~~~~~--------------------------------- 172 (282)
T TIGR03499 133 DPEGAKLYERLEEAGVSEELARELLEKLP---ERA----DAESAWRW--------------------------------- 172 (282)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HCC----CHHHHHHH---------------------------------
T ss_conf 86899999999986999999999999746---029----97899999---------------------------------
Q ss_pred HHHHHHHHHHHHHHHHC--CCCCCCEEEEECCCCCCHHHHHHHHH-H-HH--C-CCEEEEEC
Q ss_conf 68999999999999842--44467359986056565027999999-7-70--8-82499861
Q gi|254780270|r 345 EKVKERIIEYLAVQMRV--IKNKGLILCFVGPPGVGKTSLAQSIA-K-AT--G-RQYVRMSL 399 (820)
Q Consensus 345 ~~vK~rile~lav~~~~--~~~~g~il~l~gppgvGKts~~~sia-~-al--~-r~f~~isl 399 (820)
+.+.+-+.+.+.... ...++.|++|+||+|||||+..--+| . ++ | ++-.-|++
T Consensus 173 --l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~ 232 (282)
T TIGR03499 173 --LREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITT 232 (282)
T ss_pred --HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf --999999647778876554456727999778887578899999999999738996799980
No 213
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=97.75 E-value=0.00022 Score=52.09 Aligned_cols=77 Identities=27% Similarity=0.263 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECC
Q ss_conf 2106889987766520116899999999999984244-467359986056565027999999770-----8824998618
Q gi|254780270|r 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKAT-----GRQYVRMSLG 400 (820)
Q Consensus 327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~-~~g~il~l~gppgvGKts~~~sia~al-----~r~f~~islg 400 (820)
..|+..-++.|++..||-.-|++.|+..+.-...+++ .|+-+|.|.|||||||+-+++-||++| .-+||+.=.+
T Consensus 13 ~~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi~ 92 (127)
T pfam06309 13 SFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFVA 92 (127)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 88779999999875347798999999999999748999997488701899987989999999998754347875688424
Q ss_pred CCC
Q ss_conf 888
Q gi|254780270|r 401 GVY 403 (820)
Q Consensus 401 g~~ 403 (820)
-.+
T Consensus 93 ~~h 95 (127)
T pfam06309 93 TNH 95 (127)
T ss_pred CCC
T ss_conf 224
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=0.00073 Score=48.06 Aligned_cols=129 Identities=26% Similarity=0.338 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 50467899985222478857888889999999875311025789999987654041587663221068899877665201
Q gi|254780270|r 264 GRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFG 343 (820)
Q Consensus 264 ~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyG 343 (820)
.......+.+++...+++++..+.+...+ . ... .
T Consensus 150 ~~p~~~~l~~~L~~~Gvs~~la~~l~~~~---~---~~~----------------------------------------~ 183 (412)
T PRK05703 150 IPPEFAKLYKRLKESGLSPEIADKLLKLL---L---EDM----------------------------------------N 183 (412)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHH---H---HCC----------------------------------------C
T ss_conf 88789999999998699999999999986---6---428----------------------------------------9
Q ss_pred HHHHHHHHHHHHHH----HHHCCCCCCCEEEEECCCCCCHHHHHHHHHH--HH--CC-CEEEEECCCCCC--------HH
Q ss_conf 16899999999999----9842444673599860565650279999997--70--88-249986188888--------88
Q gi|254780270|r 344 LEKVKERIIEYLAV----QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK--AT--GR-QYVRMSLGGVYD--------EA 406 (820)
Q Consensus 344 l~~vK~rile~lav----~~~~~~~~g~il~l~gppgvGKts~~~sia~--al--~r-~f~~islgg~~d--------~~ 406 (820)
-++.+..+++.|+- .......++.+++||||+|||||+..--||. +| |+ +-.-|++---|= -+
T Consensus 184 ~~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya 263 (412)
T PRK05703 184 PREAWRYLLELLANMLPTRVEDILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYA 263 (412)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 79999999999997578887665456736999888887567699999999999729981799983767777999999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 8356320014567128999998327887399993
Q gi|254780270|r 407 DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLD 440 (820)
Q Consensus 407 ~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ld 440 (820)
+|=|-- .++-.-|.-+-++|.+..-.. +||+|
T Consensus 264 ~ilgvp-~~v~~~~~~l~~al~~~~~~d-lILID 295 (412)
T PRK05703 264 KIMGIP-VKVAYDPKELAKALEQLANCD-LILID 295 (412)
T ss_pred HHCCCE-EEEECCHHHHHHHHHHHCCCC-EEEEE
T ss_conf 971973-798479999999998715899-79996
No 215
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.0003 Score=50.99 Aligned_cols=81 Identities=23% Similarity=0.363 Sum_probs=42.7
Q ss_pred CCCEEEEECCCCCCHHHH-HHHHHHH-H--CC-CEEEEECCCCCCHH--------HHCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 673599860565650279-9999977-0--88-24998618888888--------8356320014567128999998327
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSL-AQSIAKA-T--GR-QYVRMSLGGVYDEA--------DIRGHRRTYIGSMPGRIIQSLKRAK 431 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~-~~sia~a-l--~r-~f~~islgg~~d~~--------~i~gh~~ty~ga~pg~ii~~l~~~~ 431 (820)
+|.|++||||+|||||+- ||==|++ | |+ +-.-|++---|=.| +|=|- -.|+-.-|.-+-++|.+..
T Consensus 175 ~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~Ilgv-Pv~vv~~~~eL~~aL~~l~ 253 (404)
T PRK06995 175 RGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV-PVHAVKDAADLRLALAELR 253 (404)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHC
T ss_conf 475589866888763758999999999983898379997687547899999999987595-5999599999999999708
Q ss_pred CCCEEEEEECHHHHHHHCC
Q ss_conf 8873999933155423117
Q gi|254780270|r 432 RSNPLLLLDEIDKMGSDLR 450 (820)
Q Consensus 432 ~~npv~~ldeidk~~~~~~ 450 (820)
.. -+||+|- .|.+++
T Consensus 254 ~~-dlILIDT---aGrs~r 268 (404)
T PRK06995 254 NK-HIVLIDT---VGMSQR 268 (404)
T ss_pred CC-CEEEEEC---CCCCCC
T ss_conf 99-9999809---998976
No 216
>KOG1968 consensus
Probab=97.68 E-value=0.00018 Score=52.70 Aligned_cols=182 Identities=25% Similarity=0.312 Sum_probs=104.2
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHCC---------CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH
Q ss_conf 76652011689999999999998424---------44673-599860565650279999997708824998618888888
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMRVI---------KNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA 406 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~~~---------~~~g~-il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~ 406 (820)
+...-++...+| .+.++||-++-.. ...+- ++.+.||||+|||+-+--+|+.+|-.-+.+.-+-+|...
T Consensus 319 ~k~~~~~~~~~~-~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~ 397 (871)
T KOG1968 319 SKALEGNASSSK-KASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKK 397 (871)
T ss_pred HHHHHCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 776633520366-6665887622133354002686156677887317887772056766301206540104754334422
Q ss_pred HHCCCCCCCCCCCCHHHHHHHH-------HCCCCCEEEEEECHHHHHHHCCCCHH--HHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 8356320014567128999998-------32788739999331554231177115--56655406001681332010352
Q gi|254780270|r 407 DIRGHRRTYIGSMPGRIIQSLK-------RAKRSNPLLLLDEIDKMGSDLRGDPS--AALLEVLDPAQNSSFVDHYLEVE 477 (820)
Q Consensus 407 ~i~gh~~ty~ga~pg~ii~~l~-------~~~~~npv~~ldeidk~~~~~~gdp~--~allevldp~qn~~f~d~y~~~~ 477 (820)
+++- -+-++.-...|.... ......-|+++||+|=|...-||.-. +.+.+
T Consensus 398 ~l~~---~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~------------------ 456 (871)
T KOG1968 398 ELLN---KLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK------------------ 456 (871)
T ss_pred HHHH---HHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH------------------
T ss_conf 7776---6402446640001111113300046660699974255442000136999999998------------------
Q ss_pred CCCCCEEEEEECCCCCCCHH-HCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 36442799993486554413-11724-79982587868999899986089899862578131322899999997317
Q gi|254780270|r 478 YDLSDVMFIMTANTLNIPLP-LMDRM-EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 478 ~dls~v~fi~tan~~~i~~~-l~drm-e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
-|..=-|||+|+.+-|.. .++|- ..++++--... -+.++++. ....+.+.++++.++.++..+
T Consensus 457 --ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~--------~i~~ri~s--i~~se~~ki~~~~l~~~s~~~ 521 (871)
T KOG1968 457 --KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSE--------LIRSRIMS--ICKSEGIKISDDVLEEISKLS 521 (871)
T ss_pred --HCCCCEEEEECCCCCCCCCCHHHHCCEEEECCCCHH--------HHHHHHHH--HHCCCCEECCCHHHHHHHHHC
T ss_conf --635776887337777665202232002340488577--------77766653--302464241727889998750
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00018 Score=52.75 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCC--CCC-CCCCCCCHH--H-HHHHHH---
Q ss_conf 24446735998605656502799999977088249--986188888888356--320-014567128--9-999983---
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV--RMSLGGVYDEADIRG--HRR-TYIGSMPGR--I-IQSLKR--- 429 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~--~islgg~~d~~~i~g--h~~-ty~ga~pg~--i-i~~l~~--- 429 (820)
..+.-+-.+.|.||+|+||..+|+.+|++|-=.-- --+.|-.++---+.. |-- .++..-.|+ | |..++.
T Consensus 19 ~~~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~ 98 (334)
T PRK07993 19 QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTE 98 (334)
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 85981046754799998899999999999818999999999999789998668999847753422345599999999999
Q ss_pred ------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCE
Q ss_conf ------2788739999331554231177115566554060016813320103523644279999348655-441311724
Q gi|254780270|r 430 ------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRM 502 (820)
Q Consensus 430 ------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drm 502 (820)
....+=|+++|..|+|+.. -++|||-.|. -|= .+++||.+++..+ +++..+.|-
T Consensus 99 ~~~~~~~~g~~kV~iI~~Ae~mn~~----AaNaLLKtLE-------------EPp--~~t~~iL~t~~~~~lLpTI~SRC 159 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDA----AANALLKTLE-------------EPP--EKTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred HHHHCCCCCCCEEEEECCHHHHCHH----HHHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCCHHHHHC
T ss_conf 9843665699479997667775999----9999998612-------------799--88499986698565723887523
Q ss_pred EEEEECCCCHHHHHHH
Q ss_conf 7998258786899989
Q gi|254780270|r 503 EIIRIAGYTEEEKLQI 518 (820)
Q Consensus 503 e~i~~~~y~~~ek~~i 518 (820)
-.+.++.-+.++-..-
T Consensus 160 q~~~~~~~~~~~~~~w 175 (334)
T PRK07993 160 RLHYLAPPPEQYALTW 175 (334)
T ss_pred CCCCCCCCCHHHHHHH
T ss_conf 0415899799999999
No 218
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.58 E-value=0.00017 Score=52.84 Aligned_cols=54 Identities=35% Similarity=0.604 Sum_probs=45.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 652011689999999999998424446735998605656502799999977088
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR 392 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r 392 (820)
+|-|||+++=++|+.|+---......+-.||.|+||+|-||+||+..+-++|.+
T Consensus 58 ~dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~ 111 (358)
T pfam08298 58 ADFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL 111 (358)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 320015999999999999997236721058999778987758999999987205
No 219
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.57 E-value=5.3e-05 Score=56.69 Aligned_cols=88 Identities=33% Similarity=0.584 Sum_probs=57.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC-CCCC----------------CCCC--------------
Q ss_conf 99860565650279999997708824998618888888835-6320----------------0145--------------
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR-GHRR----------------TYIG-------------- 417 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~-gh~~----------------ty~g-------------- 417 (820)
+...||||||||++++-||+.|...= +.+||.-- .|+| |-+| .|+|
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t-~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFIT-PEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEEE-EEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHH
T ss_conf 99867998458999999999998559--66513983-1142088275159998147955798884788762104786278
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEECHHHH---HHHCCCCHHHHHHHHCCC
Q ss_conf 6712899999832788739999331554---231177115566554060
Q gi|254780270|r 418 SMPGRIIQSLKRAKRSNPLLLLDEIDKM---GSDLRGDPSAALLEVLDP 463 (820)
Q Consensus 418 a~pg~ii~~l~~~~~~npv~~ldeidk~---~~~~~gdp~~allevldp 463 (820)
.+.-..+.++++|-..--||.+|||.+| |..|+ +++=|+|+.
T Consensus 85 ~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~----~~ve~vl~~ 129 (179)
T COG1618 85 GLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFR----EAVEEVLKS 129 (179)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCHHHH----HHHHHHHCC
T ss_conf 889986899998863499899943363302008899----999999658
No 220
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.57 E-value=6.9e-05 Score=55.85 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 467359986056565027999999770882499
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVR 396 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~ 396 (820)
.++.-|+|+|+||+|||++||.+|+.|+.+|+-
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD 34 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGYEFID 34 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 999808988899999899999999995969023
No 221
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.57 E-value=0.0053 Score=41.57 Aligned_cols=166 Identities=24% Similarity=0.347 Sum_probs=116.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 6735998605656502799999977088---249986188888---8883563200145671289999983278873999
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLL 438 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ 438 (820)
..| |++.|--|+||--+||.-.-+--| ||.-.++.|+-| |+|+=||.-- .+..+|-+=++ .-.-.+
T Consensus 227 DAP-LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg-~~gk~GffE~A------ngGTVl 298 (511)
T COG3283 227 DAP-LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG-DEGKKGFFEQA------NGGTVL 298 (511)
T ss_pred CCC-EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCHHHHC------CCCEEE
T ss_conf 787-6874488861889999874438455897367644779666767777356888-77763463402------697488
Q ss_pred EECHHHHHHHCCCCHHHHHHHHCCCCCCCCEE------EEECCCCCCCCCEEEEEEC---------------------CC
Q ss_conf 93315542311771155665540600168133------2010352364427999934---------------------86
Q gi|254780270|r 439 LDEIDKMGSDLRGDPSAALLEVLDPAQNSSFV------DHYLEVEYDLSDVMFIMTA---------------------NT 491 (820)
Q Consensus 439 ldeidk~~~~~~gdp~~allevldp~qn~~f~------d~y~~~~~dls~v~fi~ta---------------------n~ 491 (820)
||||..||...+ +.||-.|. .-+|+ .||.| |-.|||. |.
T Consensus 299 LDeIgEmSp~lQ----aKLLRFL~---DGtFRRVGee~Ev~vd-------VRVIcatq~nL~~lv~~g~fReDLfyRLNV 364 (511)
T COG3283 299 LDEIGEMSPRLQ----AKLLRFLN---DGTFRRVGEDHEVHVD-------VRVICATQVNLVELVQKGKFREDLFYRLNV 364 (511)
T ss_pred EEHHHHCCHHHH----HHHHHHHC---CCCCCCCCCCCEEEEE-------EEEEECCCCCHHHHHHCCCHHHHHHHHHHE
T ss_conf 500332499899----99999862---7760003775457877-------899961666699998637258878877501
Q ss_pred CC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 55-4413117247998258786899989998608989986257813132289999999731774102347888799
Q gi|254780270|r 492 LN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALM 566 (820)
Q Consensus 492 ~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~ 566 (820)
++ --+||++|++=| .---.+.+-+...+.|.. .-+++++.+.+ ...|.+-.-||+|+-.|.
T Consensus 365 Ltl~~PpLRer~~di-----------~pL~e~Fv~q~s~elg~p--~pkl~~~~~~~-L~~y~WpGNVRqL~N~iy 426 (511)
T COG3283 365 LTLNLPPLRERPQDI-----------MPLAELFVQQFSDELGVP--RPKLAADLLTV-LTRYAWPGNVRQLKNAIY 426 (511)
T ss_pred EEECCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCC--CCCCCHHHHHH-HHHCCCCCCHHHHHHHHH
T ss_conf 342388500065210-----------689999999999975899--87668789999-987799960999999999
No 222
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.56 E-value=8.5e-05 Score=55.14 Aligned_cols=105 Identities=24% Similarity=0.320 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 9999999999842444673599860565650279999997708---8249986188888888356320014567128999
Q gi|254780270|r 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQ 425 (820)
Q Consensus 349 ~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~ 425 (820)
.+.+..||-..|-. ++.-|+|.||||||||-||-+|+.++= .+...++...+- .+++.. +...--.+.++
T Consensus 32 ~~~i~~L~~~~~i~--~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~--~~l~~~---~~~~~~~~~l~ 104 (178)
T pfam01695 32 RRLIAELAGLDWIE--QAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLV--EQLKRA---RGDGRLARTLQ 104 (178)
T ss_pred HHHHHHHHCCCCHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHH--HHHHHH---HHCCCHHHHHH
T ss_conf 99999885597421--587689989999878999999999999869859999616799--999987---52674999999
Q ss_pred HHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 99832788739999331554231177115566554060016
Q gi|254780270|r 426 SLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQN 466 (820)
Q Consensus 426 ~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn 466 (820)
.+.+ -+|.+|||+-....+- ..+.-|++++|.-.+
T Consensus 105 ~~~~----~dlLIiDDlG~~~~s~--~~~~~lf~li~~Rye 139 (178)
T pfam01695 105 RLAK----ADLLILDDIGYLPLSQ--EAAHLLFELISDRYE 139 (178)
T ss_pred HHHC----CCEEEEEHHCCCCCCH--HHHHHHHHHHHHHHC
T ss_conf 9625----8978872001656898--999999999999975
No 223
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=97.53 E-value=0.0002 Score=52.27 Aligned_cols=163 Identities=23% Similarity=0.391 Sum_probs=112.2
Q ss_pred HHHHCCCCCEEEEEECHHHHHHHC----CCCHHH-----HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC-----C
Q ss_conf 998327887399993315542311----771155-----66554060016813320103523644279999348-----6
Q gi|254780270|r 426 SLKRAKRSNPLLLLDEIDKMGSDL----RGDPSA-----ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN-----T 491 (820)
Q Consensus 426 ~l~~~~~~npv~~ldeidk~~~~~----~gdp~~-----allevldp~qn~~f~d~y~~~~~dls~v~fi~tan-----~ 491 (820)
|+.++. .+.||++|||||+.... +-||+- =||=+.-- ++-.-.|=-|. =++|||||+-- -
T Consensus 262 A~~~vE-~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEG---S~V~TKyG~Vk--TdHiLFIAaGAF~lAKP 335 (463)
T TIGR00390 262 AIDRVE-QSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEG---STVNTKYGSVK--TDHILFIAAGAFHLAKP 335 (463)
T ss_pred HHHHHH-HCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEECCEEE--CCHHHHHHHHHHCCCCC
T ss_conf 999998-4782898530354216888678887655651011420226---66431001042--21578767523202777
Q ss_pred CC-CCHHHCCCEEE-EEECCCCHHHHHHHHHH---HHHHH---HHHHHCCCCCCCCCCHHHHHHHHHC-C-----CCCCH
Q ss_conf 55-44131172479-98258786899989998---60898---9986257813132289999999731-7-----74102
Q gi|254780270|r 492 LN-IPLPLMDRMEI-IRIAGYTEEEKLQIAKN---HLVKK---VLTEHALKQEECCISDGVLLDIIRL-F-----THEAG 557 (820)
Q Consensus 492 ~~-i~~~l~drme~-i~~~~y~~~ek~~i~~~---~l~p~---~~~~~~~~~~~~~~~~~~i~~ii~~-Y-----t~EaG 557 (820)
.| ||. |--|+=+ +||...|.++=..|-+. =|+.+ .++-.|+ ++.|+|+||..|.+- | |-.=|
T Consensus 336 SDLIPE-LQGRfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv---~i~F~d~AI~~iAe~ay~~N~~teniG 411 (463)
T TIGR00390 336 SDLIPE-LQGRFPIRVELEALTVDDFERILTEPKNSLIKQYQALLKVEGV---NIEFSDEAIKKIAELAYNVNQKTENIG 411 (463)
T ss_pred CCCCCH-HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 666631-1066737787676329999996208343689999998876276---403355689999999998164423346
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 34788879999898765421178520127967867530520
Q gi|254780270|r 558 VRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 558 vR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
-|-|.-.++.+.-.+..+.-.-.-..++||.+-+.+-||.-
T Consensus 412 ARRLHTv~E~lledisFea~D~~~~~~~I~~~YV~~kL~~~ 452 (463)
T TIGR00390 412 ARRLHTVLERLLEDISFEAPDVSGQKVTITADYVEKKLGDL 452 (463)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHH
T ss_conf 50466899999987512666863432450789999998788
No 224
>PRK13948 shikimate kinase; Provisional
Probab=97.52 E-value=9.6e-05 Score=54.76 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 4673599860565650279999997708824998
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
...+.|+|+|+||.|||++|+.+|+.||.+|+-.
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~ 41 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDT 41 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 9998189889999988999999999969598888
No 225
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=97.52 E-value=0.0002 Score=52.29 Aligned_cols=88 Identities=26% Similarity=0.431 Sum_probs=60.3
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHH----------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 87766520116899999999999984----------24446735998605656502799999977088249986188888
Q gi|254780270|r 335 RILDQDHFGLEKVKERIIEYLAVQMR----------VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD 404 (820)
Q Consensus 335 ~iLd~~hyGl~~vK~rile~lav~~~----------~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d 404 (820)
.-||+.-=|-+++|.-|- +|.+.. +...-+.=|+-.||-|||||-|||=|||-.+-||+++=
T Consensus 8 ~~LD~yIiGQ~~AKk~VA--iALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVE------ 79 (463)
T TIGR00390 8 AELDKYIIGQDEAKKAVA--IALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE------ 79 (463)
T ss_pred HHHCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEE------
T ss_conf 751442206366788999--998866776128711135658743043278898544799999998448914666------
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEE
Q ss_conf 88835632001456712899999832788739
Q gi|254780270|r 405 EADIRGHRRTYIGSMPGRIIQSLKRAKRSNPL 436 (820)
Q Consensus 405 ~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv 436 (820)
| -.||=|| .=||=|.+|.+==+.+-|
T Consensus 80 -A----tKfTEVG-YVGrdVeSmvRDL~~~aV 105 (463)
T TIGR00390 80 -A----TKFTEVG-YVGRDVESMVRDLVDTAV 105 (463)
T ss_pred -E----EEEEECC-EECCCHHHHHHHHHHHHH
T ss_conf -4----1001102-142410036787899999
No 226
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.52 E-value=8.7e-05 Score=55.08 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=27.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 599860565650279999997708824998
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
=|+|+|+||+|||++|+.+|+.|+++|+-.
T Consensus 6 nI~LiG~mGsGKstvgk~LA~~l~~~fiD~ 35 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 289889999988999999999969996878
No 227
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0016 Score=45.48 Aligned_cols=45 Identities=36% Similarity=0.618 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHH-----CCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 16899999999999984-----2444673599860565650279999997
Q gi|254780270|r 344 LEKVKERIIEYLAVQMR-----VIKNKGLILCFVGPPGVGKTSLAQSIAK 388 (820)
Q Consensus 344 l~~vK~rile~lav~~~-----~~~~~g~il~l~gppgvGKts~~~sia~ 388 (820)
.+++++.++++++-... ..+.++.|++||||.|||||+-.--+|.
T Consensus 147 ~~~v~~~l~~~i~~~i~~~~~~~~~~k~~vi~lVGPTGvGKTTTiAKLAa 196 (388)
T PRK12723 147 YDKVRDSVIIYIAKTIKCSGSIIDNLKKRIFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 87999999999997622366653355762899989988757879999999
No 228
>PRK13947 shikimate kinase; Provisional
Probab=97.51 E-value=9.1e-05 Score=54.92 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=27.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860565650279999997708824998
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
|+|+|+||.|||++||.+|+.|+.+|+-.
T Consensus 4 I~LiG~mGsGKTtiGk~La~~L~~~fiD~ 32 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKKVATTLSFGFIDT 32 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 89979999988999999999979698987
No 229
>PRK13946 shikimate kinase; Provisional
Probab=97.47 E-value=0.00011 Score=54.41 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=32.2
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 42444673599860565650279999997708824998
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
+.+..+..-|.|+|+||+|||++||.+|+.|+.+|+-.
T Consensus 14 ~~~~l~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~ 51 (195)
T PRK13946 14 IRAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDA 51 (195)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 99985899589989999988999999999979798988
No 230
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.46 E-value=0.00012 Score=54.10 Aligned_cols=29 Identities=34% Similarity=0.651 Sum_probs=27.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860565650279999997708824998
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
|+|+|+||+|||++||.+|+.|+.+|+-.
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~ 30 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 89988999988999999999979897968
No 231
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.45 E-value=9.7e-05 Score=54.73 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=27.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 359986056565027999999770882499
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVR 396 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~~ 396 (820)
+-|-|+|+||+||||||+-+|++|+.+|+-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D 32 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFID 32 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 618997179997768999999981998022
No 232
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0065 Score=40.89 Aligned_cols=138 Identities=21% Similarity=0.248 Sum_probs=82.3
Q ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC-CCEEEEEECH
Q ss_conf 673-59986056565027999999770882499861888888883563200145671289999983278-8739999331
Q gi|254780270|r 365 KGL-ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR-SNPLLLLDEI 442 (820)
Q Consensus 365 ~g~-il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~-~npv~~ldei 442 (820)
..+ +.++.||-+||||++.+-+.+.+...+..++. .|++-++..- .-..+++....- ..+.|+||||
T Consensus 35 ~~~~i~~i~GpR~~GKTtllk~l~~~~~~~~iy~~~------~d~~~~~~~l-----~d~~~~~~~~~~~~~~yifLDEI 103 (398)
T COG1373 35 LRPFIILILGPRQVGKTTLLKLLIKGLLEEIIYINF------DDLRLDRIEL-----LDLLRAYIELKEREKSYIFLDEI 103 (398)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC------CCCCCCHHHH-----HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 578549998886477899999999747773599973------6200013567-----78999999852225745999833
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC----CCCHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 55423117711556655406001681332010352364427999934865----54413117247998258786899989
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL----NIPLPLMDRMEIIRIAGYTEEEKLQI 518 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~----~i~~~l~drme~i~~~~y~~~ek~~i 518 (820)
..+-.-.+ ++- ++.|.... =+||.+-|+. .+..-|.-|-..+++.+.+-.|=...
T Consensus 104 q~v~~W~~-----~lk-------------~l~d~~~~---~v~itgsss~ll~~~~s~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 104 QNVPDWER-----ALK-------------YLYDRGNL---DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCCHHHHH-----HHH-------------HHHCCCCC---EEEEECCCHHHHCCCHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 37610899-----999-------------99756775---0999837167541330232499823789848888998641
Q ss_pred HH--------HHHHHHHHHHHCCC
Q ss_conf 99--------86089899862578
Q gi|254780270|r 519 AK--------NHLVKKVLTEHALK 534 (820)
Q Consensus 519 ~~--------~~l~p~~~~~~~~~ 534 (820)
.. .-++-+-+..-|+.
T Consensus 163 ~~~~~~~~~~~~~f~~Yl~~GGfP 186 (398)
T COG1373 163 KGEEIEPSKLELLFEKYLETGGFP 186 (398)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 352100256799999987728985
No 233
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.43 E-value=0.001 Score=46.94 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCE---EEEECCCCCCHHHHCCCCCCCCCC--
Q ss_conf 89999999999998424446735998605656502799999977--08824---998618888888835632001456--
Q gi|254780270|r 346 KVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA--TGRQY---VRMSLGGVYDEADIRGHRRTYIGS-- 418 (820)
Q Consensus 346 ~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~a--l~r~f---~~islgg~~d~~~i~gh~~ty~ga-- 418 (820)
+-.+.|++.| +..+..-.+++++|++|+|||+||+.+.+. ....| +.++++.-.+..+|...=...++.
T Consensus 3 ~~~~~i~~~L----~~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 78 (285)
T pfam00931 3 DMIEALIEKL----LEMSENLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDD 78 (285)
T ss_pred HHHHHHHHHH----HCCCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 8999999998----648989539998899956399999999716556505983899997976668999999999856665
Q ss_pred ------CCHHHHHHHHH-CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC
Q ss_conf ------71289999983-27887399993315542311771155665540600168133201035236442799993486
Q gi|254780270|r 419 ------MPGRIIQSLKR-AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT 491 (820)
Q Consensus 419 ------~pg~ii~~l~~-~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~ 491 (820)
-...+...+++ ....+-+++||.+..-. . -..+.. .-|..+ .=|+|+ |+|-|.
T Consensus 79 ~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDVw~~~-~-----~~~l~~-~~~~~~------------~gSrII-vTTR~~ 138 (285)
T pfam00931 79 SDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKN-D-----WDKIGV-PFPDGE------------NGSRVI-VTTRSE 138 (285)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHH-H-----HHHHHC-CCCCCC------------CCCEEE-EECCCH
T ss_conf 45555789999999999972796699963888789-9-----999734-575789------------982799-855758
Q ss_pred CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 554413117247998258786899989998608
Q gi|254780270|r 492 LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLV 524 (820)
Q Consensus 492 ~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~ 524 (820)
++...+.-...++++..-+.+|-..+.++|..
T Consensus 139 -~V~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~ 170 (285)
T pfam00931 139 -SVAGRMGGTSKPHEVESLEPEESWELFSNKVF 170 (285)
T ss_pred -HHHHHCCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf -99987378883476168987999999999846
No 234
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.41 E-value=4.8e-05 Score=57.01 Aligned_cols=130 Identities=22% Similarity=0.341 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHCC------------CCCCCCCCCCHHHHHHHHHC
Q ss_conf 467359986056565027999999770-88249986188888888356------------32001456712899999832
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKAT-GRQYVRMSLGGVYDEADIRG------------HRRTYIGSMPGRIIQSLKRA 430 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al-~r~f~~islgg~~d~~~i~g------------h~~ty~ga~pg~ii~~l~~~ 430 (820)
..|.-+.|.|||||+|+.|++.++.++ +-.|...=|.--....|+=| ..|-.-|-+| .
T Consensus 37 lagehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPeElFGP~si~~Lk~~g~y~R~t~G~LP----~----- 107 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLP----E----- 107 (498)
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEEEEECCCCCC----C-----
T ss_conf 7289469888995138899999999855740899998746988885383329987117848972267588----6-----
Q ss_pred CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C---CCHHHCCCEEEEE
Q ss_conf 78873999933155423117711556655406001681332010352364427999934865-5---4413117247998
Q gi|254780270|r 431 KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N---IPLPLMDRMEIIR 506 (820)
Q Consensus 431 ~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~---i~~~l~drme~i~ 506 (820)
--+.+||||=|-++.. -++||.++. -..|++-.-.+++.| ..+|+..|.+ + =-.+|.|||=+=-
T Consensus 108 ---A~iaFLDEIfKansAI----LNtLLtilN---Er~f~nG~~~~~vPL--~~li~ASNElP~~~~~L~AlyDRfL~R~ 175 (498)
T PRK13531 108 ---AEIVFLDEIWKAGPAI----LNTLLTAIN---ERRFRNGAHEEKIPM--RLLVAASNELPEADSSLEALYDRMLIRL 175 (498)
T ss_pred ---CEEEHHHHHHHCCHHH----HHHHHHHHH---HHEECCCCCEECCCH--HHHHHCCCCCCCCCCCHHHHHHHHHHHE
T ss_conf ---6131578786148899----999999864---640347983130446--8864304679999840788887644102
Q ss_pred ECCCCHHH
Q ss_conf 25878689
Q gi|254780270|r 507 IAGYTEEE 514 (820)
Q Consensus 507 ~~~y~~~e 514 (820)
.-+|..++
T Consensus 176 ~v~~v~~~ 183 (498)
T PRK13531 176 WLDKVQDK 183 (498)
T ss_pred ECCCCCCH
T ss_conf 23131676
No 235
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.39 E-value=0.0013 Score=46.27 Aligned_cols=131 Identities=28% Similarity=0.453 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-
Q ss_conf 3221068899877665201168999999999999842444673599860565650279999997708824998618888-
Q gi|254780270|r 325 KTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY- 403 (820)
Q Consensus 325 ~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~- 403 (820)
.-++|+-=||+++..- +.|++|| .+.+..-.=.+++|||=+|||+|-+=||+.+---+-++.+.|++
T Consensus 94 v~S~NiRIaRE~~G~A--------~~~~~yL----~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KV 161 (282)
T TIGR02858 94 VASLNIRIAREVLGAA--------DKILPYL----VDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKV 161 (282)
T ss_pred CCCCCEEEEEECCCCC--------HHHHHHH----HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 4642133020005775--------6668877----305894467888868898851048889888607854246899746
Q ss_pred ---CH-HHHCCC----------CCC-CCCCCCHHHHHHHHHC-CCCCE-EEEEECHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf ---88-883563----------200-1456712899999832-78873-9999331554231177115566554060016
Q gi|254780270|r 404 ---DE-ADIRGH----------RRT-YIGSMPGRIIQSLKRA-KRSNP-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQN 466 (820)
Q Consensus 404 ---d~-~~i~gh----------~~t-y~ga~pg~ii~~l~~~-~~~np-v~~ldeidk~~~~~~gdp~~allevldp~qn 466 (820)
|| |||=|. -|| -..+=| =-|+|+-+ .+|-| ||.-|||-+. .| .-||||++.
T Consensus 162 givDERSEIAgC~~GvPQ~~vG~RtDVLD~CP--KAEGmMM~iRSMSP~Viv~DEIGr~-ED-----~~Al~eA~n---- 229 (282)
T TIGR02858 162 GIVDERSEIAGCVNGVPQLDVGIRTDVLDGCP--KAEGMMMLIRSMSPDVIVVDEIGRE-ED-----VEALLEALN---- 229 (282)
T ss_pred EEEECCHHHHHHCCCCCCCCCCCCEEECCCCC--HHHHHHHHHHCCCCCEEEEECCCCH-HH-----HHHHHHHHC----
T ss_conf 99843246565458824144676067517885--3789999997069857998148895-33-----899999861----
Q ss_pred CCEEEEECCCCCCCCCEEEEEECCCCC
Q ss_conf 813320103523644279999348655
Q gi|254780270|r 467 SSFVDHYLEVEYDLSDVMFIMTANTLN 493 (820)
Q Consensus 467 ~~f~d~y~~~~~dls~v~fi~tan~~~ 493 (820)
|.|=-||||---+
T Consensus 230 --------------aGV~~I~TaHg~~ 242 (282)
T TIGR02858 230 --------------AGVSVIATAHGRD 242 (282)
T ss_pred --------------CCCEEEEEECCCC
T ss_conf --------------6756887640488
No 236
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.39 E-value=0.00016 Score=53.08 Aligned_cols=29 Identities=41% Similarity=0.763 Sum_probs=26.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860565650279999997708824998
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
|.|+|+||+|||++||.+|+.||.+|+-.
T Consensus 5 I~LiG~mGsGKstiGk~LA~~L~~~fiD~ 33 (172)
T PRK03731 5 LFLVGPRGCGKTTVGMALAQALGYRFVDT 33 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 89988999988999999999859997978
No 237
>KOG0480 consensus
Probab=97.39 E-value=0.0035 Score=42.93 Aligned_cols=157 Identities=28% Similarity=0.419 Sum_probs=92.1
Q ss_pred HHHHHHHCHHHHHHHHHHHH--HHHHHCC---CCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEE----ECCC----
Q ss_conf 77665201168999999999--9998424---446735-99860565650279999997708824998----6188----
Q gi|254780270|r 336 ILDQDHFGLEKVKERIIEYL--AVQMRVI---KNKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRM----SLGG---- 401 (820)
Q Consensus 336 iLd~~hyGl~~vK~rile~l--av~~~~~---~~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~i----slgg---- 401 (820)
.|=-..||.+.||.-|+=.| .|.|... +.+|-| +|+||-||+||..+-|+.+.-+-|--+.- |-.|
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCEEE
T ss_conf 63762015389986689998478543578986546773189957997138899999865487315850763443464689
Q ss_pred -CCCHHHHCCCCCCC-CCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf -88888835632001-4567128999998327887399993315542311771155665540600168133201035236
Q gi|254780270|r 402 -VYDEADIRGHRRTY-IGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 (820)
Q Consensus 402 -~~d~~~i~gh~~ty-~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~d 479 (820)
|+|+. .+-+|. .||+ + =.-|.|--+||.|||...- ..|++|-.. |- -+-
T Consensus 422 VvkD~e---sgdf~iEAGAL--------m--LADnGICCIDEFDKMd~~d----qvAihEAME--QQ----------tIS 472 (764)
T KOG0480 422 VVKDEE---SGDFTIEAGAL--------M--LADNGICCIDEFDKMDVKD----QVAIHEAME--QQ----------TIS 472 (764)
T ss_pred EEECCC---CCCEEEECCCE--------E--ECCCCEEEECHHCCCCHHH----HHHHHHHHH--HH----------EEH
T ss_conf 976377---77335534737--------8--8169668831000357076----899999987--51----------000
Q ss_pred CCCEEEEEE----------CC--------------CCCCCHHHCCCEEEEE--ECCCCHHHHHHHHHH
Q ss_conf 442799993----------48--------------6554413117247998--258786899989998
Q gi|254780270|r 480 LSDVMFIMT----------AN--------------TLNIPLPLMDRMEIIR--IAGYTEEEKLQIAKN 521 (820)
Q Consensus 480 ls~v~fi~t----------an--------------~~~i~~~l~drme~i~--~~~y~~~ek~~i~~~ 521 (820)
+.|.=.+|| || .+++.+||+.|...+. ++.-....-..||+.
T Consensus 473 IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~h 540 (764)
T KOG0480 473 IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARH 540 (764)
T ss_pred HEECCEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHCEEEEEECCCCHHHHHHHHHH
T ss_conf 33020688622235555532776774553300665227780454222279999357866777999999
No 238
>PRK13949 shikimate kinase; Provisional
Probab=97.38 E-value=0.00016 Score=53.04 Aligned_cols=29 Identities=31% Similarity=0.667 Sum_probs=26.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860565650279999997708824998
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
|.|+|+||.||||+||.+|+.||.+|+-.
T Consensus 4 I~LiG~mGsGKstiGk~La~~l~~~fiD~ 32 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 89979999988999999999959997978
No 239
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.00078 Score=47.85 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=84.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE---EEEECCCCCCHHHH-CC-CCCC-CC-------------------
Q ss_conf 444673599860565650279999997708824---99861888888883-56-3200-14-------------------
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY---VRMSLGGVYDEADI-RG-HRRT-YI------------------- 416 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r~f---~~islgg~~d~~~i-~g-h~~t-y~------------------- 416 (820)
.+.-+.-+.|.||.|+||..+|...|++|-=.- --.+.|-.+.-.-+ .| |--- ++
T Consensus 17 ~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDAKAA 96 (342)
T ss_pred CCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHHHHH
T ss_conf 68713057657999867999999999998389999888978677778888627999745534002102233321001011
Q ss_pred -----C---CCCHH-----HHHHHHH------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf -----5---67128-----9999983------278873999933155423117711556655406001681332010352
Q gi|254780270|r 417 -----G---SMPGR-----IIQSLKR------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVE 477 (820)
Q Consensus 417 -----g---a~pg~-----ii~~l~~------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~ 477 (820)
| ..|++ -|+.|.+ .....=|+++|..|+|.. .-++|||-.|- -|
T Consensus 97 ~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~----~aaNalLK~LE-------------EP 159 (342)
T PRK06964 97 DADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNV----AAANALLKTLE-------------EP 159 (342)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCH----HHHHHHHHHHC-------------CC
T ss_conf 12221012356556454999999999970075458844999827787389----99999999723-------------79
Q ss_pred CCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf 3644279999348655-44131172479982587868999899
Q gi|254780270|r 478 YDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIA 519 (820)
Q Consensus 478 ~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~ 519 (820)
= .+++||.+++..+ +++.++.|--.+.++.-+.++-..--
T Consensus 160 p--~~~~~iL~~~~~~~llpTI~SRcq~~~~~~~~~~~~~~~L 200 (342)
T PRK06964 160 P--PGVVFLLVSARIDRLLPTILSRCRQWPMTVPAPEAAAAWL 200 (342)
T ss_pred C--CCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHH
T ss_conf 8--7848999869925483688767643028995999999999
No 240
>PRK12377 putative replication protein; Provisional
Probab=97.35 E-value=0.00067 Score=48.36 Aligned_cols=86 Identities=27% Similarity=0.436 Sum_probs=49.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHCCCCCCCCCC-CCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7359986056565027999999770---8824998618888888835632001456-71289999983278873999933
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIRGHRRTYIGS-MPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~gh~~ty~ga-~pg~ii~~l~~~~~~npv~~lde 441 (820)
+--+.|+||||||||.||-+|+..+ |+.-..+++..+ -..++. +|-.. .--++++.+.+ -++.+|||
T Consensus 101 ~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dL--v~~L~~---a~~~g~~~~k~l~~l~~----~dLLIIDE 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV--MSRLHE---SYDNGQSGEKFLQELCK----VDLLVLDE 171 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHHH---HHHCCCCHHHHHHHHHC----CCEEEEHH
T ss_conf 8608998999987889999999999987996999889999--999999---99848509999999733----89898600
Q ss_pred HHHHHHHCCCCHHHHHHHHCC
Q ss_conf 155423117711556655406
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLD 462 (820)
Q Consensus 442 idk~~~~~~gdp~~allevld 462 (820)
+.-...+ -.-++-|.+|+|
T Consensus 172 lG~~~~s--~~~~~llfqlI~ 190 (248)
T PRK12377 172 IGIQRET--KNEQVVLNQIID 190 (248)
T ss_pred CCCCCCC--HHHHHHHHHHHH
T ss_conf 0578898--679999999999
No 241
>PRK00625 shikimate kinase; Provisional
Probab=97.34 E-value=0.00019 Score=52.47 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 998605656502799999977088249986
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMS 398 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~is 398 (820)
|.|+|+||+|||++||.+|+.||++|+-..
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~~~FvD~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 999899999889999999999399957749
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.34 E-value=0.002 Score=44.82 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=46.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf 735998605656502799999977088---24998618888888835632001456712899999832788739999331
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI 442 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei 442 (820)
..=|.|.||+|||||-|+-+||++|=. ....++.-.+- ..|+..++.--+. --.+.+.+.. -++.+||++
T Consensus 183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~--~~l~~~~~~~~~~-~~~~~~~l~~----~DLLIIDDL 255 (330)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELI--ENLREIRFNNDND-APELEDLLIN----CDLLIIDDL 255 (330)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHHHHHCCCCCC-HHHHHHHHHH----CCEEEEECC
T ss_conf 88669889999988999999999999879949996299999--9999975457644-8999999961----898997210
Q ss_pred HHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 5542311771155665540600
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPA 464 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~ 464 (820)
..-..+ ---.+.|.+++|--
T Consensus 256 G~E~~t--~~~~~~Lf~iIN~R 275 (330)
T PRK06835 256 GTESIT--EFSKTELFNLINKR 275 (330)
T ss_pred CCCCCC--HHHHHHHHHHHHHH
T ss_conf 345588--68999999999999
No 243
>KOG1970 consensus
Probab=97.33 E-value=0.00089 Score=47.41 Aligned_cols=177 Identities=22% Similarity=0.267 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE-------CCCCCCHHHHCCCCCCCC
Q ss_conf 1689999999999998424446735998605656502799999977088249986-------188888888356320014
Q gi|254780270|r 344 LEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMS-------LGGVYDEADIRGHRRTYI 416 (820)
Q Consensus 344 l~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~is-------lgg~~d~~~i~gh~~ty~ 416 (820)
+++||+-.. .|-..+++.++.||+|.||+|+|||+..+-+|+-||-.+..-+ -+-++++++-++ .-|.
T Consensus 91 I~eVk~WL~---~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~--~~~~ 165 (634)
T KOG1970 91 ISEVKQWLK---QVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLM--FPYQ 165 (634)
T ss_pred HHHHHHHHH---HHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHCC--CCHH
T ss_conf 899999999---99974536676079985798887131999999864802123047766566555455440013--3036
Q ss_pred CCCC------------HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 5671------------2899999832788739999331554231177115566554060016813320103523644279
Q gi|254780270|r 417 GSMP------------GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVM 484 (820)
Q Consensus 417 ga~p------------g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~ 484 (820)
.-|+ |.+-....+..+.--+||+||+--+.-. |-+-++=|+|- -|.- +-..-++
T Consensus 166 s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~---d~~~~f~evL~---------~y~s--~g~~PlI 231 (634)
T KOG1970 166 SQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR---DDSETFREVLR---------LYVS--IGRCPLI 231 (634)
T ss_pred HHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHH---HHHHHHHHHHH---------HHHH--CCCCCEE
T ss_conf 67899998999987623165313333467507985026144400---36999999999---------9984--5777679
Q ss_pred EEEEC-CC--CCCCHH-------HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 99934-86--554413-------11724799825878689998999860898998625781313228999
Q gi|254780270|r 485 FIMTA-NT--LNIPLP-------LMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGV 544 (820)
Q Consensus 485 fi~ta-n~--~~i~~~-------l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~ 544 (820)
||-|- +. .+.+.. -.-|...|...+-+.. |-|++|- +++...+-....+...+.+
T Consensus 232 f~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T----~MKK~L~-ric~~e~~~~s~~k~~~~~ 296 (634)
T KOG1970 232 FIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPT----IMKKFLK-RICRIEANKKSGIKVPDTA 296 (634)
T ss_pred EEEECCCCCCCCCHHHHCHHHHHHCCCCCEEEECCCCHH----HHHHHHH-HHHHHHCCCCCCCCCCHHH
T ss_conf 998635357876343424265653358524761577679----9999999-9999862666667675067
No 244
>KOG0741 consensus
Probab=97.33 E-value=0.0024 Score=44.10 Aligned_cols=85 Identities=28% Similarity=0.477 Sum_probs=56.0
Q ss_pred HHHHH--HHHHHHHCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCEEEEE----CCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 99999--99999842444673--5998605656502799999977088249986----1888888883563200145671
Q gi|254780270|r 349 ERIIE--YLAVQMRVIKNKGL--ILCFVGPPGVGKTSLAQSIAKATGRQYVRMS----LGGVYDEADIRGHRRTYIGSMP 420 (820)
Q Consensus 349 ~rile--~lav~~~~~~~~g~--il~l~gppgvGKts~~~sia~al~r~f~~is----lgg~~d~~~i~gh~~ty~ga~p 420 (820)
.+|++ .+-|.+.+.+-+.+ -++|.||||+|||+||--||..-+-||++|- +-|+...|- .
T Consensus 517 ~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaK------------c 584 (744)
T KOG0741 517 TRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAK------------C 584 (744)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHH------------H
T ss_conf 7887668899998633466763589986699887688999997527998479737787037466788------------9
Q ss_pred HHHHHHHHHC-CCCCEEEEEECHHHH
Q ss_conf 2899999832-788739999331554
Q gi|254780270|r 421 GRIIQSLKRA-KRSNPLLLLDEIDKM 445 (820)
Q Consensus 421 g~ii~~l~~~-~~~npv~~ldeidk~ 445 (820)
--|......| ++.--+|++|+|..+
T Consensus 585 ~~i~k~F~DAYkS~lsiivvDdiErL 610 (744)
T KOG0741 585 AHIKKIFEDAYKSPLSIIVVDDIERL 610 (744)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 99999888763386508998155656
No 245
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0018 Score=45.04 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=102.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC-----------CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 46735998605656502799999977088-----------249986188888888356320014567128999998----
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGR-----------QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK---- 428 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r-----------~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~---- 428 (820)
.+...|+|.|++|.|+--++...|++|== -+.++.-|.--|--.+.. .-++...--+..+.
T Consensus 6 n~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~p----e~~sIkieqir~li~~l~ 81 (262)
T PRK05818 6 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFD----QKNPIKKEDALSIINKLN 81 (262)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC----CCCCCCHHHHHHHHHHHH
T ss_conf 8985056644877646999999999862289999998886278675589997799716----645577989999999982
Q ss_pred HCC-C--CCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHHCCCEE
Q ss_conf 327-8--87399993315542311771155665540-6001681332010352364427999934865-54413117247
Q gi|254780270|r 429 RAK-R--SNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPLMDRME 503 (820)
Q Consensus 429 ~~~-~--~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l~drme 503 (820)
... . .+-|++++..|+|+.. .++|||-.| .|.+ +++||.+++.. .+++..+.|-=
T Consensus 82 ~~s~e~~g~KV~II~~Ae~Mt~~----AANALLKtLEEPp~----------------nt~fIL~t~~~~~LLPTIrSRC~ 141 (262)
T PRK05818 82 RPSVESNGKKIYIIYGIEKLNKQ----SANSLLKLIEEPPK----------------NTYGIFTTRNENNILNTILSRCV 141 (262)
T ss_pred HCCCCCCCCEEEEECCHHHHCHH----HHHHHHHHHCCCCC----------------CEEEEEEECCHHHCCCHHHHHCC
T ss_conf 11400288489998777874999----99999986128987----------------83899973881437308887701
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99825878689998999860898998625781313228999999973177410234788879999898
Q gi|254780270|r 504 IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARK 571 (820)
Q Consensus 504 ~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~ 571 (820)
- ..--+ +|+....+...-+ ...+.+.+++..+..++..|...+ ||.+.-.+....-+
T Consensus 142 ~--~~~~~-~~~~~~~~~~~~~-------~~~~~i~~~~~s~de~~~~~~~gs-~~~~l~il~~~i~~ 198 (262)
T PRK05818 142 Q--YVVLS-KEKKVPFKVESND-------RYFQYILLSFYSVDEQLQAYNNGS-FSKLKNIIETLINK 198 (262)
T ss_pred C--CCCCC-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHC
T ss_conf 4--46664-3466788887408-------889876410110799998861676-88899999999875
No 246
>KOG2035 consensus
Probab=97.30 E-value=0.01 Score=39.31 Aligned_cols=164 Identities=24% Similarity=0.370 Sum_probs=103.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH-C----------CCEEE-------EECCCCC-----CHHHHCCCCCCCCC
Q ss_conf 244467359986056565027999999770-8----------82499-------8618888-----88883563200145
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKAT-G----------RQYVR-------MSLGGVY-----DEADIRGHRRTYIG 417 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al-~----------r~f~~-------islgg~~-----d~~~i~gh~~ty~g 417 (820)
.....=|.|.++||-|.||-+....+-+-| | |.|.. |+-=.-. ..|+---|.|
T Consensus 29 ~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DR---- 104 (351)
T KOG2035 29 SSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDR---- 104 (351)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCEEEEEEECCCCEEEECHHHCCCCCH----
T ss_conf 1457787078888898872111899999885787245056667886488863799994256517747343375117----
Q ss_pred CCCHHHHHHHHH-CCCCCE----------EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 671289999983-278873----------999933155423117711556655406001681332010352364427999
Q gi|254780270|r 418 SMPGRIIQSLKR-AKRSNP----------LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI 486 (820)
Q Consensus 418 a~pg~ii~~l~~-~~~~np----------v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi 486 (820)
-+||.|.| +.-+-| |+++.|.|+++.+.+ +||=--. ..|. |.+=.|
T Consensus 105 ----vViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ----~aLRRTM---------EkYs------~~~RlI 161 (351)
T KOG2035 105 ----VVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ----HALRRTM---------EKYS------SNCRLI 161 (351)
T ss_pred ----HHHHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHH----HHHHHHH---------HHHH------CCCEEE
T ss_conf ----9999999998741413332666548999803576508899----9999999---------9986------071699
Q ss_pred EECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9348655-441311724799825878689998999860898998625781313228999999973177410234788879
Q gi|254780270|r 487 MTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERAL 565 (820)
Q Consensus 487 ~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i 565 (820)
..+|+.+ |-+|++.|--.|.+++.+.+|-..+-.+ .+++ +.+.++++.+..|.++-. |||.|.|
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~-----v~~k-----E~l~lp~~~l~rIa~kS~-----~nLRrAl 226 (351)
T KOG2035 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSK-----VLKK-----EGLQLPKELLKRIAEKSN-----RNLRRAL 226 (351)
T ss_pred EEECCCCCCHHHHHHHEEEEECCCCCHHHHHHHHHH-----HHHH-----HCCCCCHHHHHHHHHHHC-----CCHHHHH
T ss_conf 992674302267762205876789987899999999-----9987-----334484999999999706-----4399999
Q ss_pred H
Q ss_conf 9
Q gi|254780270|r 566 M 566 (820)
Q Consensus 566 ~ 566 (820)
-
T Consensus 227 l 227 (351)
T KOG2035 227 L 227 (351)
T ss_pred H
T ss_conf 9
No 247
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=97.30 E-value=0.0054 Score=41.48 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
Q ss_conf 22106889987766520116899999999999984244467359986056565027999999770882499861888888
Q gi|254780270|r 326 TKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDE 405 (820)
Q Consensus 326 ~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~ 405 (820)
......+.-++|-...|.=..|..-++-++ .+...|-..+.|.|||.+|||-+|.||+++++. +.. +-. +++
T Consensus 77 ~~i~~N~~~~l~~~~gy~P~~~g~~l~~w~----~k~~~krN~i~~~Gp~~TGks~la~ai~~~~~~--~g~-v~~-~N~ 148 (271)
T pfam01057 77 FDIEENRIYQLLSLNGYNPAEVGQVLLAWL----SKQGGKRNTVWFYGPASTGKTNLAQAIAHAVPL--YGC-VNW-TNE 148 (271)
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHH----HCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC--EEE-ECC-CCC
T ss_conf 664417899999984999899999999998----447888756999889876789999999986895--278-517-877
Q ss_pred HH----HCCCC--CCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 88----35632--0014567128999998327887399993315542311771155665540600168133201035236
Q gi|254780270|r 406 AD----IRGHR--RTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 (820)
Q Consensus 406 ~~----i~gh~--~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~d 479 (820)
++ ..++- -==-|.|+...+..+|..---++|. +|-..|-+.....-| .++-+ | .
T Consensus 149 ~fp~~d~~~~~~~wwee~~~~~~~ve~~r~il~G~~i~-vD~k~k~~~~l~~~P-----viiTs--n-----------~- 208 (271)
T pfam01057 149 NFPFNDCPNKLLIWWEEGLMTVKVVELAKAILGGTDVR-VDQKCKGSVEIEPTP-----VIITS--N-----------H- 208 (271)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCE-EECCCCCCCCCCCCC-----EEEEE--C-----------C-
T ss_conf 88764465478999807887188999999972999625-634789800237997-----89982--7-----------8-
Q ss_pred CCCEEEEEECCCCC--CCHHHCCCEEEEEECCC
Q ss_conf 44279999348655--44131172479982587
Q gi|254780270|r 480 LSDVMFIMTANTLN--IPLPLMDRMEIIRIAGY 510 (820)
Q Consensus 480 ls~v~fi~tan~~~--i~~~l~drme~i~~~~y 510 (820)
++-++...|... =..||+|||-.+.+..-
T Consensus 209 --di~~v~~g~~~s~~Ha~~Lk~rm~~~~~~~~ 239 (271)
T pfam01057 209 --DITLVVDGNTTSFEHAQPLKDRMYKFNLTKR 239 (271)
T ss_pred --CEEEEEECCCCCHHHHHHHHHHEEEEEECCC
T ss_conf --5799986875357777787653689885767
No 248
>KOG1808 consensus
Probab=97.25 E-value=0.00092 Score=47.30 Aligned_cols=138 Identities=28% Similarity=0.412 Sum_probs=89.1
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCC-------CHHHHHHHHHC
Q ss_conf 98424446735998605656502799999977088249986188888888356320014567-------12899999832
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSM-------PGRIIQSLKRA 430 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~-------pg~ii~~l~~~ 430 (820)
..+.-+.+--=+||.||-|.||||+.+-.|+++|++|+||..---.|-.+.-| ||+..- -|..|+||++.
T Consensus 432 ~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig---~y~~~~~g~l~freg~LV~Alr~G 508 (1856)
T KOG1808 432 LARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIG---TYVADDNGDLVFREGVLVQALRNG 508 (1856)
T ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHH---HHEECCCCCEEEEHHHHHHHHHHC
T ss_conf 99999658998677547676811599999998546734200246333999986---650078897255346899998708
Q ss_pred CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-------CCCCCCEEEEECCCCCCCCCEEEEEECCCC------C-CCH
Q ss_conf 78873999933155423117711556655406-------001681332010352364427999934865------5-441
Q gi|254780270|r 431 KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-------PAQNSSFVDHYLEVEYDLSDVMFIMTANTL------N-IPL 496 (820)
Q Consensus 431 ~~~npv~~ldeidk~~~~~~gdp~~allevld-------p~qn~~f~d~y~~~~~dls~v~fi~tan~~------~-i~~ 496 (820)
..++||||-=... |--.||.-+|| ||-|-.++-|=. -+-.+|-|.. . +.+
T Consensus 509 ----~~~vlD~lnla~~----dvL~aLnrllddnRel~ipe~~rlv~~h~~--------f~lfatqn~~~~y~grk~lsR 572 (1856)
T KOG1808 509 ----DWIVLDELNLAPH----DVLEALNRLLDDNRELFIPETQRLVKAHPE--------FMLFATQNPPGTYGGRKILSR 572 (1856)
T ss_pred ----CEEEECCCCCCCH----HHHHHHHHHHHHHCCCCCCCCCEEECCCCC--------HHHHHHCCCCCCCCHHHHHHH
T ss_conf ----7798402012406----789999840454041256344323224701--------234543077666531566553
Q ss_pred HHCCCEEEEEECCCCHHH
Q ss_conf 311724799825878689
Q gi|254780270|r 497 PLMDRMEIIRIAGYTEEE 514 (820)
Q Consensus 497 ~l~drme~i~~~~y~~~e 514 (820)
++++|.-.+++---..+|
T Consensus 573 a~~~rf~e~~f~~~~e~e 590 (1856)
T KOG1808 573 ALRNRFIELHFDDIGEEE 590 (1856)
T ss_pred CCCCCCHHHHHHHCCCHH
T ss_conf 144400235355257145
No 249
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.22 E-value=0.00033 Score=50.68 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHH
Q ss_conf 99860565650279999997708824998618888888835632001456712899999832788739999331554231
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSD 448 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~ 448 (820)
++|.||||+|||.+++.+|+++.+.+-. ....+.|....-...-.+. ...+|+++|++.....
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~------------~~~~~~Y~~~~~~~~wdgY----~gq~vvi~DD~~~~~~- 63 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGL------------PKKDSVYSRNPDDDFWDGY----TGQPVVIIDDFGQNPD- 63 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCC------------CCCCCEEECCCCCCCCCCC----CCCEEEEEECCCCCCC-
T ss_conf 9897999898899999999999998377------------8789779678877656788----9985799965777888-
Q ss_pred CCCC-HHHHHHHHCCCCCCCCEEEEE--C---CCCCCCCCEEEEEECC
Q ss_conf 1771-155665540600168133201--0---3523644279999348
Q gi|254780270|r 449 LRGD-PSAALLEVLDPAQNSSFVDHY--L---EVEYDLSDVMFIMTAN 490 (820)
Q Consensus 449 ~~gd-p~~allevldp~qn~~f~d~y--~---~~~~dls~v~fi~tan 490 (820)
++ ..+.+.-+.+ +..|.=+. + +.+|+ |++ .|+|+|
T Consensus 64 --~~~~~~~~~~lvs---~~p~~~~ma~le~Kg~~f~-s~~-vi~tsN 104 (105)
T pfam00910 64 --GPSDEAELIRLVS---STPYPPPMAALEEKGTPFT-SKF-VIVTSN 104 (105)
T ss_pred --CCHHHHHHHHHHC---CCCCCCCCCCHHHCCCCCC-CCE-EEEECC
T ss_conf --6288999998756---9983888667614888446-888-999479
No 250
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=97.19 E-value=0.0019 Score=44.86 Aligned_cols=43 Identities=26% Similarity=0.549 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----EEEEECCCCC
Q ss_conf 244467359986056565027999999770882-----4998618888
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-----YVRMSLGGVY 403 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~-----f~~islgg~~ 403 (820)
....+--|+++.||||.|||++|+.+++.|++. .+.+++-|-+
T Consensus 29 ~~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH 76 (230)
T PRK09270 29 AEPQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFH 76 (230)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 599971899998999889999999999998623799857997365334
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=97.15 E-value=0.00024 Score=51.68 Aligned_cols=161 Identities=22% Similarity=0.366 Sum_probs=82.4
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CC
Q ss_conf 404158766322106889987766520116899999999999984244467359986056565027999999770---88
Q gi|254780270|r 316 LGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT---GR 392 (820)
Q Consensus 316 ~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al---~r 392 (820)
..+||.+ +-+.+|....+. +...-+.-||-..+-. .+.=++|+||||||||.||-+|+... |.
T Consensus 65 A~fp~~k-tle~fDf~~~~~-----------l~~~~i~~La~~~fi~--~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~ 130 (258)
T PRK09183 65 AAFPAVK-TFEEYDFTFATG-----------APQKQLQSLRSLSFIE--RNENIVLLGPSGVGKTHLAIALGYEAVRAGI 130 (258)
T ss_pred CCCCCCC-CHHHCCCCCCCC-----------CCHHHHHHHHCCCHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7999987-775556546886-----------2389999882581665--5886799899998689999999999998799
Q ss_pred CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 24998618888888835632001456712899999832788739999331554231177115566554060016813320
Q gi|254780270|r 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDH 472 (820)
Q Consensus 393 ~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~ 472 (820)
+-..+++..+- .+++-.+. -|+.-+.+++.=..--++++||+.-..-+- .-+..|.|+++---.+
T Consensus 131 ~v~f~~~~~L~--~~L~~a~~------~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~--~~~~~lfeli~~Rye~----- 195 (258)
T PRK09183 131 KVRFTTAADLL--LQLSTAQR------QGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ--EEANLFFQVIAKRYEK----- 195 (258)
T ss_pred EEEEEEHHHHH--HHHHHHHH------CCCHHHHHHHHHCCCCEEEEHHHHCCCCCH--HHHHHHHHHHHHHHCC-----
T ss_conf 39997899999--99999987------685999999874346514431331546888--8999999999998576-----
Q ss_pred ECCCCCCCCCEEEEEECCCC-----C-------CCHHHCCC----EEEEEECC--CCHHHH
Q ss_conf 10352364427999934865-----5-------44131172----47998258--786899
Q gi|254780270|r 473 YLEVEYDLSDVMFIMTANTL-----N-------IPLPLMDR----MEIIRIAG--YTEEEK 515 (820)
Q Consensus 473 y~~~~~dls~v~fi~tan~~-----~-------i~~~l~dr----me~i~~~~--y~~~ek 515 (820)
+ =.|.|.|-. + +-.+++|| -++|.+.| |-..++
T Consensus 196 --------~--S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~i~l~GeSyR~k~~ 246 (258)
T PRK09183 196 --------G--AMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGESYRLKQK 246 (258)
T ss_pred --------C--CEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf --------7--78998899978985651686999999999860461799745877237658
No 252
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.0003 Score=51.04 Aligned_cols=135 Identities=24% Similarity=0.388 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999984244467359986056565027999999770---882499861888888883563200145671289999
Q gi|254780270|r 350 RIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQS 426 (820)
Q Consensus 350 rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~ 426 (820)
+.++-||-..+-.. +.=+.|+||||||||.||.+++.+. |.+-..+.+..+- .++.-. ..-|+.-+.
T Consensus 84 ~~i~~La~~~fi~~--~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~--~~L~~a------~~~g~~~~~ 153 (254)
T PRK06526 84 DTIAHLGTLDFVTG--KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWV--ARLAAA------HHAGRLQDE 153 (254)
T ss_pred HHHHHHHCCCHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHH--HHHHHH------HHCCCHHHH
T ss_conf 99999863717765--88789989999868999999999999869967998779999--999998------855809999
Q ss_pred HHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-----------CCCC
Q ss_conf 98327887399993315542311771155665540600168133201035236442799993486-----------5544
Q gi|254780270|r 427 LKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-----------LNIP 495 (820)
Q Consensus 427 l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-----------~~i~ 495 (820)
+++..- -++.++||+--+.-+- .-+..|++|++---.+. | .|.|.|- -.+-
T Consensus 154 ~~~l~~-~dLLIiDe~g~~~~~~--~~a~~lf~li~~Rye~~------------S---~IiTSn~~~~~W~~~f~D~~la 215 (254)
T PRK06526 154 LVKLGR-IPLLIVDEVGYIPFEA--EAANLFFQLVSSRYERA------------S---LIVTSNKPFGRWGEVFGDDVVA 215 (254)
T ss_pred HHHHHC-CCEEEEECCCCCCCCH--HHHHHHHHHHHHHHCCC------------C---EEEECCCCHHHHHHHCCCHHHH
T ss_conf 998513-6877650213644788--99999999999997458------------8---6766589866888864868999
Q ss_pred HHHCCC----EEEEEECCCCH
Q ss_conf 131172----47998258786
Q gi|254780270|r 496 LPLMDR----MEIIRIAGYTE 512 (820)
Q Consensus 496 ~~l~dr----me~i~~~~y~~ 512 (820)
.+++|| -++|++.|=+.
T Consensus 216 ~AilDRL~H~a~~i~~~G~Sy 236 (254)
T PRK06526 216 AAMIDRLVHHAEVISLKGDSY 236 (254)
T ss_pred HHHHHHHCCCEEEEEECCCCC
T ss_conf 999998625628998438866
No 253
>PRK03839 putative kinase; Provisional
Probab=97.11 E-value=0.00037 Score=50.30 Aligned_cols=29 Identities=41% Similarity=0.832 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 59986056565027999999770882499
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVR 396 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~ 396 (820)
+|++.|.|||||||+|+-+|+.||-+++.
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~lg~~~i~ 30 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKLGYEYVN 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 89997899999899999999976987987
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0037 Score=42.76 Aligned_cols=81 Identities=30% Similarity=0.388 Sum_probs=38.9
Q ss_pred CCCCEEEEECCCCCCHHH-HHHHHHH-HH--CCCEEEEECCCCCCH--------HHHCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 467359986056565027-9999997-70--882499861888888--------88356320014567128999998327
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTS-LAQSIAK-AT--GRQYVRMSLGGVYDE--------ADIRGHRRTYIGSMPGRIIQSLKRAK 431 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts-~~~sia~-al--~r~f~~islgg~~d~--------~~i~gh~~ty~ga~pg~ii~~l~~~~ 431 (820)
.+..|++||||-|||||+ |||==|+ +| |++-.-|..---|=. |+|-|-- -|+-.-|-..-++|.+.+
T Consensus 221 ~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iP-v~vv~~~~el~~al~~~~ 299 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP-FYPVKDIKKFKETLARDG 299 (432)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-EEEEECHHHHHHHHHHCC
T ss_conf 7762999989999888999999999999974992799952665377999999999985994-599518999999998569
Q ss_pred CCCEEEEEECHHHHHHHCC
Q ss_conf 8873999933155423117
Q gi|254780270|r 432 RSNPLLLLDEIDKMGSDLR 450 (820)
Q Consensus 432 ~~npv~~ldeidk~~~~~~ 450 (820)
| -|||+|-- |.+++
T Consensus 300 ~--DlILIDTA---GrS~r 313 (432)
T PRK12724 300 S--ELILIDTA---GYSHR 313 (432)
T ss_pred C--CEEEEECC---CCCCC
T ss_conf 9--99999299---98978
No 255
>KOG0990 consensus
Probab=97.05 E-value=0.0045 Score=42.11 Aligned_cols=183 Identities=22% Similarity=0.205 Sum_probs=97.8
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 40415876632210688998776652011689999999999998424446735998605656502799999977088249
Q gi|254780270|r 316 LGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 316 ~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
..+||-+-..... +.|.++.+++=..+-+| ....+=|-++|+||||+||||--...|+-|-.+.-
T Consensus 27 ~~~pwvekyrP~~---------l~dv~~~~ei~st~~~~------~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990 27 YPQPWVEKYRPPF---------LGIVIKQEPIWSTENRY------SGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred CCCCCCCCCCCCH---------HHHHHCCCCHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 6888766889822---------56673377212478886------26888975343489988998736665665058998
Q ss_pred EEECCCCCCHHHHCCCCCCCCCCCCHHHH--HHHHH--C---CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 98618888888835632001456712899--99983--2---78873999933155423117711556655406001681
Q gi|254780270|r 396 RMSLGGVYDEADIRGHRRTYIGSMPGRII--QSLKR--A---KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSS 468 (820)
Q Consensus 396 ~islgg~~d~~~i~gh~~ty~ga~pg~ii--~~l~~--~---~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~ 468 (820)
.=|+-=-...|.=|| ++.--.+|. +.... . -..=-.++|||-|-|+.+.+ +||=-|.- .
T Consensus 92 ~~~m~lelnaSd~rg-----id~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ----nALRRvie-----k 157 (360)
T KOG0990 92 TTSMLLELNASDDRG-----IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ----NALRRVIE-----K 157 (360)
T ss_pred CHHHHHHHHCCCCCC-----CCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHHHHHH----HHHHHHHH-----H
T ss_conf 246999864367668-----861478889877641640002467615887334137669899----99999998-----7
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 3320103523644279999348655-441311724799825878689998999860898998625781313228999999
Q gi|254780270|r 469 FVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLD 547 (820)
Q Consensus 469 f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ 547 (820)
|+. ++-|+.-+|+++ |.+|++.|---.....-+...-.++-.. -.+.+++..+.+....
T Consensus 158 ~t~----------n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~sh----------i~e~e~~~~~~~~~~a 217 (360)
T KOG0990 158 YTA----------NTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSH----------IRESEQKETNPEGYSA 217 (360)
T ss_pred HCC----------CEEEEEECCCHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHH----------HHHCCHHHCCHHHHHH
T ss_conf 133----------23799861676446814641044578788875442467888----------8715311038788999
No 256
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.0012 Score=46.54 Aligned_cols=104 Identities=27% Similarity=0.469 Sum_probs=59.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHCC----C------CCCCCCCCCHHHHHHHHH-CCCCC
Q ss_conf 9986056565027999999770882---49986188888888356----3------200145671289999983-27887
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIRG----H------RRTYIGSMPGRIIQSLKR-AKRSN 434 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~g----h------~~ty~ga~pg~ii~~l~~-~~~~n 434 (820)
..+.||||||||++-+-||+-+--- |--.-.|=+...+||-| | ||+-|---+-+ -++|+. ..+|-
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk-~~gmmmaIrsm~ 218 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK-AEGMMMAIRSMS 218 (308)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHHCC
T ss_conf 6996599887077999999986315112677328997150043034358860323221010465617-888999999549
Q ss_pred E-EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--C-C-CCHH
Q ss_conf 3-99993315542311771155665540600168133201035236442799993486--5-5-4413
Q gi|254780270|r 435 P-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--L-N-IPLP 497 (820)
Q Consensus 435 p-v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~-~-i~~~ 497 (820)
| ||+.|||.-. +-+-|+++.+.- .|-.|.||.- + + |..|
T Consensus 219 PEViIvDEIGt~------~d~~A~~ta~~~------------------GVkli~TaHG~~iedl~krp 262 (308)
T COG3854 219 PEVIIVDEIGTE------EDALAILTALHA------------------GVKLITTAHGNGIEDLIKRP 262 (308)
T ss_pred CCEEEEECCCCH------HHHHHHHHHHHC------------------CCEEEEEECCCCHHHHHCCH
T ss_conf 957998343647------779999999854------------------85899950441177765081
No 257
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.0032 Score=43.22 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=40.0
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHC
Q ss_conf 4244467359986056565027999999770---8824998618888888835
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~ 409 (820)
+++. +.-++.+-||||-|||++|..+|.+| |++++++++.|-+.....|
T Consensus 21 ~~p~-rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r 72 (227)
T PRK06696 21 LNLT-RPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIR 72 (227)
T ss_pred CCCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 5999-868999778998787999999999997469948997154434737777
No 258
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.02 E-value=0.00063 Score=48.54 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860565650279999997708824998
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
+.|+|+||.|||++|+-+|+.||.+|+-.
T Consensus 3 I~LiG~mGaGKTtvGr~LA~~L~~~FvD~ 31 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRISEVLDLQFIDM 31 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 99989999987799999999839795647
No 259
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.00042 Score=49.86 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 67359986056565027999999770---882499861888888883563200145671289999983278873999933
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
++.=++|+||||||||.||-+++... |.+-..++...+- .++.-.+. -|..-+.+++- ..-++++|||
T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~--~~L~~a~~------~~~~~~~~~~l-~~~dLLIiDe 175 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV--QKLQVARR------ELQLESAIAKL-DKFDLLILDD 175 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHHHHHH------CCCHHHHHHHH-HCCCEEEEHH
T ss_conf 487089989999878899999999999879939997899999--99999775------58399999997-4446012201
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-----------CCCCHHHCCCE----EEEE
Q ss_conf 15542311771155665540600168133201035236442799993486-----------55441311724----7998
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-----------LNIPLPLMDRM----EIIR 506 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-----------~~i~~~l~drm----e~i~ 506 (820)
+.=+.-+ ..-+..|.++++---.+. | .|.|.|- -.+-.+++||+ ++|+
T Consensus 176 ~G~~~~~--~~~~~~lf~lI~~Rye~~------------S---~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~ 238 (269)
T PRK08181 176 LAYVTKD--QAETSVLFELISARYERR------------S---ILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFE 238 (269)
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHCCC------------C---EEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 0566799--899999999999985788------------8---8998899977887753868899999998701528997
Q ss_pred ECCCCHHHHH
Q ss_conf 2587868999
Q gi|254780270|r 507 IAGYTEEEKL 516 (820)
Q Consensus 507 ~~~y~~~ek~ 516 (820)
+.|=+.--|-
T Consensus 239 l~GeSyR~k~ 248 (269)
T PRK08181 239 MNVESYRRRT 248 (269)
T ss_pred ECCCCCCCHH
T ss_conf 5587612056
No 260
>KOG1400 consensus
Probab=96.99 E-value=0.0029 Score=43.54 Aligned_cols=106 Identities=20% Similarity=0.244 Sum_probs=66.4
Q ss_pred CCEEEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECC
Q ss_conf 7636756631782568871430642948999999999972--98499997368677788865602531489999979988
Q gi|254780270|r 24 DGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNS--HKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLP 101 (820)
Q Consensus 24 ~~~~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~--d~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klp 101 (820)
.....|++++-..|+|||+++|+.++.|+-+.+++..... ++.|.+.+.-+- +. ....-+|.+.|-+ -+.|
T Consensus 62 t~~~~p~~~~~~~v~~PgqtLPl~~i~~~~~s~~r~lvs~ar~~~F~vl~r~~v----~~--re~~r~tt~evd~-~R~p 134 (371)
T KOG1400 62 TTNWIPICGQVMAVLFPGQTLPLKFIDPQERSIVRRLVSSARDNGFVVLFRSDV----PE--RESLRYTTTEVDA-YRVP 134 (371)
T ss_pred CEEEECCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCC----HH--HHHCCCCCEECCC-CCCC
T ss_conf 602631467204686476668600059889999999987611796589850424----67--7634660000035-6560
Q ss_pred -C--CE--EEEEEEEEEEEEEEEE-EECCCEEEEEEEEECC
Q ss_conf -9--80--9999997547999988-7079819999998048
Q gi|254780270|r 102 -D--GT--VKILVEGSVRARIVEY-IEREDFLEAITQVLPD 136 (820)
Q Consensus 102 -D--G~--~~ILVeGl~RvkI~ei-~~~~pyl~A~Ve~l~d 136 (820)
| |. ..+...|..|+++.++ .+..+--.|.++.+|+
T Consensus 135 ~d~Fgn~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~ 175 (371)
T KOG1400 135 QDNFGNALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPD 175 (371)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEECCC
T ss_conf 34441020222642641023244113587766634774465
No 261
>PRK06921 hypothetical protein; Provisional
Probab=96.97 E-value=0.0016 Score=45.59 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-C---CEEEEECCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 68999999999999842444673599860565650279999997708-8---2499861888888883563200145671
Q gi|254780270|r 345 EKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG-R---QYVRMSLGGVYDEADIRGHRRTYIGSMP 420 (820)
Q Consensus 345 ~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~-r---~f~~islgg~~d~~~i~gh~~ty~ga~p 420 (820)
.++++-.++|..--.-..+....-|.|.|+||+|||-|+-+||+.|= + +...++.... -.+|+ .+|-. .
T Consensus 95 k~a~~~a~eY~~~F~~i~~~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~--~~~lk---~~~~~--~ 167 (265)
T PRK06921 95 KDAYECAVEYVKDFEKIQGCRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG--FGDLK---DDFDL--L 167 (265)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHH---HHHHH--H
T ss_conf 99999999999977876077766279972898988999999999999962971999887999--99999---88888--9
Q ss_pred HHHHHHHHHCCCCCEEEEEECHHH
Q ss_conf 289999983278873999933155
Q gi|254780270|r 421 GRIIQSLKRAKRSNPLLLLDEIDK 444 (820)
Q Consensus 421 g~ii~~l~~~~~~npv~~ldeidk 444 (820)
-..+..+++ -+|.++|.+=|
T Consensus 168 ~~~l~~~~~----~dlLIIDDLfk 187 (265)
T PRK06921 168 EAKLNRMKK----VEVLFIDDLFK 187 (265)
T ss_pred HHHHHHHHC----CCEEEEECCCC
T ss_conf 999998632----99999822122
No 262
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.96 E-value=0.00098 Score=47.12 Aligned_cols=36 Identities=39% Similarity=0.747 Sum_probs=30.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
Q ss_conf 59986056565027999999770882499861888888
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDE 405 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~ 405 (820)
|++.-||||.||||+||.||+.||-+| ++-|+++.+
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~~~~--ldtG~ir~~ 36 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPY--LDTGGIRTE 36 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEE--ECCCCCCCH
T ss_conf 988868997898999999999909907--766542548
No 263
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.95 E-value=0.0013 Score=46.22 Aligned_cols=107 Identities=30% Similarity=0.473 Sum_probs=60.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH-H--CCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 446735998605656502799999977088249986188888888-3--5632001456712899999832788739999
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD-I--RGHRRTYIGSMPGRIIQSLKRAKRSNPLLLL 439 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~-i--~gh~~ty~ga~pg~ii~~l~~~~~~npv~~l 439 (820)
+...-+...+||||||||+|-+|+-+ .|.+-++.-++-.-. + +-.|-|++-. |--|-..+--|++.+-|+|+
T Consensus 36 epPP~vVavvGPpgvGKtTLiksLvk----~ytk~~l~~i~GPiTvvs~K~rRiTfiEc-~nDi~smiD~AKvADlVLl~ 110 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVK----NYTKQNISDIKGPITVVTGKKRRLTFIEC-PNDINAMIDIAKVADLVLLL 110 (225)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH----HHHHCCCCCCCCCEEEEECCCEEEEEEEC-CCHHHHHHHHHHHHHEEEEE
T ss_conf 99996999989899778899999999----98544375578887999468426899974-86099998788764336888
Q ss_pred ECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 33155423117711556655406001681332010352364427999934865
Q gi|254780270|r 440 DEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL 492 (820)
Q Consensus 440 deidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~ 492 (820)
=. .+|--+- --.|.|.=-|.+.| -+|+-|.|-.|.
T Consensus 111 iD-----~s~GfEm--EtfEfLnilq~hG~-----------PkV~GVltHlD~ 145 (225)
T cd01882 111 ID-----ASFGFEM--ETFEFLNILQVHGF-----------PRVMGVLTHLDL 145 (225)
T ss_pred EC-----CCCCEEE--EHHHHHHHHHHCCC-----------CCEEEEEECCCC
T ss_conf 61-----6655352--08999999997599-----------943788544310
No 264
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00066 Score=48.39 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 35998605656502799999977088249
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
+.+|+.|+|||||||+++-++ .||-+++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i 28 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVI 28 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HHCCCEE
T ss_conf 937993799986687999999-8298466
No 265
>KOG0482 consensus
Probab=96.87 E-value=0.0027 Score=43.78 Aligned_cols=155 Identities=26% Similarity=0.416 Sum_probs=80.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCC------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC--CCCH-HHH
Q ss_conf 6520116899999999999984244------46735-998605656502799999977088249986188--8888-883
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIK------NKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG--VYDE-ADI 408 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~------~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~islgg--~~d~-~~i 408 (820)
-+.||+++||+-.|-.| |+-.-+. .+|.| +||.|-|||-|..|-+-|.+.--|--+.-.-|. |.=- |-.
T Consensus 342 PEIyGheDVKKaLLLlL-VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVm 420 (721)
T KOG0482 342 PEIYGHEDVKKALLLLL-VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVM 420 (721)
T ss_pred HHHCCCHHHHHHHHHHH-HCCCCCCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHH
T ss_conf 06306167999999995-17888888887666253469963897133899999998507665030388877655111211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC-CCEEEEE
Q ss_conf 563200145671289999983278873999933155423117711556655406001681332010352364-4279999
Q gi|254780270|r 409 RGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL-SDVMFIM 487 (820)
Q Consensus 409 ~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl-s~v~fi~ 487 (820)
|- .--|-| +..+=.-+=.-+.+--+||.|||..+-|- |.-||..- |--+..- -+|---| -++-.++
T Consensus 421 kD---pvTgEM---~LEGGALVLAD~GICCIDEfDKM~e~DRt----AIHEVMEQ-QTISIaK--AGI~TtLNAR~sILa 487 (721)
T KOG0482 421 KD---PVTGEM---VLEGGALVLADGGICCIDEFDKMDESDRT----AIHEVMEQ-QTISIAK--AGINTTLNARTSILA 487 (721)
T ss_pred CC---CCCCEE---EECCCEEEECCCCEEEEHHHHHHHHHHHH----HHHHHHHH-HHHHHHH--HCCCCCHHHHHHHHH
T ss_conf 37---777706---86066389716965761233323033357----99999876-5445634--201000505677665
Q ss_pred ECCC--------------CCCCHHHCCCEEEEEE
Q ss_conf 3486--------------5544131172479982
Q gi|254780270|r 488 TANT--------------LNIPLPLMDRMEIIRI 507 (820)
Q Consensus 488 tan~--------------~~i~~~l~drme~i~~ 507 (820)
.||. ++.|++|+.|+.++-+
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLSRFDll~L 521 (721)
T KOG0482 488 AANPAYGRYNPRRSPEQNINLPAALLSRFDLLWL 521 (721)
T ss_pred HCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
T ss_conf 4474334668666966736984889875454642
No 266
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.85 E-value=0.0068 Score=40.76 Aligned_cols=141 Identities=20% Similarity=0.326 Sum_probs=68.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--HCC-----CE-EEEECCCCCC-----HHH-HCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 5998605656502799999977--088-----24-9986188888-----888-35632001456712899999832788
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKA--TGR-----QY-VRMSLGGVYD-----EAD-IRGHRRTYIGSMPGRIIQSLKRAKRS 433 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~a--l~r-----~f-~~islgg~~d-----~~~-i~gh~~ty~ga~pg~ii~~l~~~~~~ 433 (820)
.+.+.|+||+|||++++-+|-. -|. +| ..+++--+.. -.+ |.-+-. ..++.+-..... ....-.
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~-~~~~~~~~~~~~-~~~~~~ 79 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWP-EPAAPVSEVWAV-ILELPE 79 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCC-CCCCCHHHHHHH-HHHCCC
T ss_conf 899982798989999999999998698436972899999567077766899999998767-745763789999-983977
Q ss_pred CEEEEEECHHHHHHHCCC--C--HHHHHH-HHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHHCCCEEEEEE
Q ss_conf 739999331554231177--1--155665-5406001681332010352364427999934865-544131172479982
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRG--D--PSAALL-EVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPLMDRMEIIRI 507 (820)
Q Consensus 434 npv~~ldeidk~~~~~~g--d--p~~all-evldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l~drme~i~~ 507 (820)
.-+|+||-+|.+..+..- + |...+| .++ +.++ +.-+.|+.-+..... +++.- +..-..+++
T Consensus 80 k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll--------~~~~----lp~~~vliTsRp~~~~~l~~~-~~~~~~~ei 146 (165)
T pfam05729 80 RVLLILDGLDELASDLGQLDGPLPVLTLLSSLL--------RKKL----LPGASLLLTSRPDALRDLRRG-LEEPRYLEV 146 (165)
T ss_pred CEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHH--------HHCC----CCCCEEEEEECCCHHHHHHHH-CCCCCEEEE
T ss_conf 289996484551444356444577999999998--------4152----788649999680379885776-488718998
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 5878689998999860
Q gi|254780270|r 508 AGYTEEEKLQIAKNHL 523 (820)
Q Consensus 508 ~~y~~~ek~~i~~~~l 523 (820)
.|++.+...+-+++|.
T Consensus 147 ~GFs~~~~~~yi~~~F 162 (165)
T pfam05729 147 LGFSEEDRKQYVRKYF 162 (165)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 8999999999999867
No 267
>PRK10416 cell division protein FtsY; Provisional
Probab=96.84 E-value=0.022 Score=36.82 Aligned_cols=164 Identities=21% Similarity=0.292 Sum_probs=89.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 467899985222478857888889999999-8753110257899999876540415876632210688998776652011
Q gi|254780270|r 266 DEISDFEARISKIRLSKEAREKALSELQKL-RQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGL 344 (820)
Q Consensus 266 ~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL-~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl 344 (820)
+-+++|++.+-.+.+.-++-.++...|+.- ++-.-.+++ ..+.
T Consensus 228 ~~~eeLEe~Li~aDvGv~tt~~ii~~l~~~~~~~~~~~~~---------------------------~l~~--------- 271 (499)
T PRK10416 228 DLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAE---------------------------ALYG--------- 271 (499)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHH---------------------------HHHH---------
T ss_conf 9999999999972059999999999999999864799999---------------------------9999---------
Q ss_pred HHHHHHHHHHHHH--HHHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH
Q ss_conf 6899999999999--9842444-673599860565650279999997708824998618888888835632001456712
Q gi|254780270|r 345 EKVKERIIEYLAV--QMRVIKN-KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPG 421 (820)
Q Consensus 345 ~~vK~rile~lav--~~~~~~~-~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg 421 (820)
..|+.|.+.|.- ..++-+. +..|+++||--|+|||+-.--+|+-+...-.++-|+.. | ||-.|
T Consensus 272 -~l~~~~~~il~~~~~~l~~~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~-D---------TfRaA--- 337 (499)
T PRK10416 272 -LLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG-D---------TFRAA--- 337 (499)
T ss_pred -HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE-C---------CCCHH---
T ss_conf -999999998731044665689998799997478787898999999999977995378840-6---------67568---
Q ss_pred HHHHHHHHCCCC--CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHC
Q ss_conf 899999832788--739999331554231177115566554060016813320103523644279999348655441311
Q gi|254780270|r 422 RIIQSLKRAKRS--NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLM 499 (820)
Q Consensus 422 ~ii~~l~~~~~~--npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~ 499 (820)
-| .-|..-+.. -||+ +.....||++....-+.-..+..| +|+.|=||--++...-|+
T Consensus 338 Ai-eQL~~w~~r~~v~vi--------~~~~g~Dpa~V~~dai~~a~~~~~------------DvviiDTAGRl~~~~~LM 396 (499)
T PRK10416 338 AV-EQLQVWGQRNNIPVI--------AQHTGADSASVIFDAIQAAKARNV------------DVLIADTAGRLQNKSHLM 396 (499)
T ss_pred HH-HHHHHHHCCCCCEEE--------ECCCCCCHHHHHHHHHHHHHHCCC------------CEEEEECCCCCCCCHHHH
T ss_conf 99-999998424573698--------368999979999999999997299------------989985776432609999
Q ss_pred C
Q ss_conf 7
Q gi|254780270|r 500 D 500 (820)
Q Consensus 500 d 500 (820)
+
T Consensus 397 ~ 397 (499)
T PRK10416 397 E 397 (499)
T ss_pred H
T ss_conf 9
No 268
>KOG4658 consensus
Probab=96.83 E-value=0.014 Score=38.27 Aligned_cols=48 Identities=33% Similarity=0.479 Sum_probs=35.9
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEE
Q ss_conf 011689999999999998424446735998605656502799999977---088249
Q gi|254780270|r 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA---TGRQYV 395 (820)
Q Consensus 342 yGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~a---l~r~f~ 395 (820)
-|++..++.+.++| ..+. ..|+.++|-.|||||+|++.|-+- .++.|-
T Consensus 161 VG~e~~~ekl~~~L-----~~d~-~~ivgi~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658 161 VGLETMLEKLWNRL-----MEDD-VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred CCHHHHHHHHHHHH-----CCCC-CCEEEEECCCCCCHHHHHHHHHHCCHHHCCCCC
T ss_conf 46889999999984-----0479-968999889703499999998413312235787
No 269
>KOG3347 consensus
Probab=96.81 E-value=0.0011 Score=46.60 Aligned_cols=36 Identities=33% Similarity=0.650 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 446735998605656502799999977088249986
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMS 398 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~is 398 (820)
....|=|...|-||||||++|.-||+.+|.+|.-||
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347 4 ERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEHH
T ss_conf 113788798679998802599999997398567455
No 270
>KOG1051 consensus
Probab=96.78 E-value=0.013 Score=38.70 Aligned_cols=143 Identities=20% Similarity=0.262 Sum_probs=81.2
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 24788-57888889999999875311025--7899999876540415876632210688998776652011689999999
Q gi|254780270|r 277 KIRLS-KEAREKALSELQKLRQMNPLSAE--SSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIE 353 (820)
Q Consensus 277 ~~~lp-~e~~~~~~kEl~rL~~m~~~s~E--~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile 353 (820)
++++. ..++..+++.. ...++++.+|. +..+.+|.-.+....-. -.||--+-+.++-=.|+++
T Consensus 136 Eag~~s~~vK~~ve~~~-g~~~~~~~~~~~~~~~L~~~~~dl~p~~~~-------------gk~dPvigr~deeirRvi~ 201 (898)
T KOG1051 136 EAGFSSSAVKSAVEQPV-GQFRSPSRGPLWPLLFLENYGTDLTPRARQ-------------GKLDPVIGRHDEEIRRVIE 201 (898)
T ss_pred HHCCCHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHCCCCCCHHHHC-------------CCCCCCCCCCHHHHHHHHH
T ss_conf 95589589999886302-445777767764346787506456724433-------------6878865885288999999
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH----------HCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHH
Q ss_conf 999998424446735998605656502799999977----------0882499861888888883563200145671289
Q gi|254780270|r 354 YLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA----------TGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRI 423 (820)
Q Consensus 354 ~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~a----------l~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~i 423 (820)
.|+-++- +-| ||||.||||||.++..+|.- .++++..+++|.+-+.+ .|-|-.-+|+
T Consensus 202 iL~Rr~k----~NP--vLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa-------~~rge~E~rl 268 (898)
T KOG1051 202 ILSRKTK----NNP--VLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGA-------KRRGEFEERL 268 (898)
T ss_pred HHHCCCC----CCC--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCC-------CCCHHHHHHH
T ss_conf 9814678----996--69836877721689999987661788853345524898700003586-------4212788999
Q ss_pred HHHHHHCC--CCCEEEEEECHHHHH
Q ss_conf 99998327--887399993315542
Q gi|254780270|r 424 IQSLKRAK--RSNPLLLLDEIDKMG 446 (820)
Q Consensus 424 i~~l~~~~--~~npv~~ldeidk~~ 446 (820)
=.-++.++ -..=|.++||+.=+.
T Consensus 269 k~l~k~v~~~~~gvILfigelh~lv 293 (898)
T KOG1051 269 KELLKEVESGGGGVILFLGELHWLV 293 (898)
T ss_pred HHHHHHHHCCCCCEEEEECCEEEEE
T ss_conf 9999998547986899832143220
No 271
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.78 E-value=0.0017 Score=45.35 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=38.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99860565650279999997708824998618888888835632001456712899999832788
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS 433 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~ 433 (820)
+.|.||||.||++.|+-||+.+| |+.||.|-+=.+.-=. ++--|+.++.....|-.
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~--~~~is~gdlLR~~~~~-------~t~~g~~i~~~~~~G~l 57 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREEIAS-------GTELGKKAKEYIDSGKL 57 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CEEECHHHHHHHHHHC-------CCHHHHHHHHHHHCCCC
T ss_conf 89989999987999999999979--8467688999999974-------99589999999987997
No 272
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.72 E-value=0.059 Score=33.62 Aligned_cols=157 Identities=25% Similarity=0.402 Sum_probs=104.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCC-------CHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 998605656502799999977088249986188888888356320014567-------1289999983278873999933
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSM-------PGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~-------pg~ii~~l~~~~~~npv~~lde 441 (820)
+++.||...||||.-+-+|+-+|++|+||.=---.|-+|--| |||--- -|..|.||++. --|.|||
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiG---TyvTdd~G~lsFkEGvLVeAlR~G----yWIVLDE 963 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIG---TYVTDDDGSLSFKEGVLVEALRRG----YWIVLDE 963 (4600)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHH---CEEECCCCCEEEEHHHHHHHHHCC----CEEEEEC
T ss_conf 798668887700499999987376079865855434998743---035068985654010789988568----6799610
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCC-EEEEECCCCCCCCCEEEEEECCCC-------CCCHHHCCCEEEEEECCCCHH
Q ss_conf 155423117711556655406001681-332010352364427999934865-------544131172479982587868
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSS-FVDHYLEVEYDLSDVMFIMTANTL-------NIPLPLMDRMEIIRIAGYTEE 513 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~-f~d~y~~~~~dls~v~fi~tan~~-------~i~~~l~drme~i~~~~y~~~ 513 (820)
+.-.-. |.--||=-+||- |.. |.-.--++-..--+.+..||-|.. ..+++.|.|.--++...--.+
T Consensus 964 LNLApT----DVLEaLNRLLDD--NRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddiped 1037 (4600)
T COG5271 964 LNLAPT----DVLEALNRLLDD--NRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPED 1037 (4600)
T ss_pred CCCCCH----HHHHHHHHHHCC--CCCEECCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 246707----799999986446--64020677552433588736886138986534127777999865676421358578
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 9998999860898998625781313228999999973177
Q gi|254780270|r 514 EKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFT 553 (820)
Q Consensus 514 ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt 553 (820)
|-..|-+. -+.|...--.+|++-|.
T Consensus 1038 Ele~ILh~---------------rc~iapSyakKiVeVyr 1062 (4600)
T COG5271 1038 ELEEILHG---------------RCEIAPSYAKKIVEVYR 1062 (4600)
T ss_pred HHHHHHHC---------------CCCCCHHHHHHHHHHHH
T ss_conf 99999963---------------67668799999999998
No 273
>PRK02496 adk adenylate kinase; Provisional
Probab=96.66 E-value=0.0025 Score=44.05 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=42.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 9986056565027999999770882499861888888883563200145671289999983278873
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np 435 (820)
|.|.||||.||++.|+.||+.+| |+.||.|-+=- ++++. ++--|+.++.+...|-.-|
T Consensus 4 iillG~PGSGKgTqa~~L~~~~~--~~his~GdllR-~~~~~------~s~lg~~i~~~i~~G~lvp 61 (185)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLQ--IPHISTGDILR-QAITE------QTPLGIKAQGYVDSGELVP 61 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CEEECHHHHHH-HHHHC------CCHHHHHHHHHHHCCCCCC
T ss_conf 99979999998999999999969--97788889999-99874------9988999999998799677
No 274
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.05 Score=34.21 Aligned_cols=160 Identities=26% Similarity=0.346 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 0467899985222478857888889999999-875311025789999987654041587663221068899877665201
Q gi|254780270|r 265 RDEISDFEARISKIRLSKEAREKALSELQKL-RQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFG 343 (820)
Q Consensus 265 ~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL-~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyG 343 (820)
++-.++|++.+-.+++.-++-+.+..+|++= .+-... .|-...+
T Consensus 66 e~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~--------------------------~~~~~v~--------- 110 (340)
T COG0552 66 EDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKI--------------------------KDEETVK--------- 110 (340)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC--------------------------CCHHHHH---------
T ss_conf 88999999999970246999999999999875102368--------------------------9889999---------
Q ss_pred HHHHHHHHHHHHHH-------HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCC
Q ss_conf 16899999999999-------98424446735998605656502799999977088249986188888888356320014
Q gi|254780270|r 344 LEKVKERIIEYLAV-------QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYI 416 (820)
Q Consensus 344 l~~vK~rile~lav-------~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ 416 (820)
+-.++.+.+++.. .....+.+..+++|||--|||||+-.--+|.-|...=.++-|+-. | |+-
T Consensus 111 -~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~-D---------TFR 179 (340)
T COG0552 111 -EALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAG-D---------TFR 179 (340)
T ss_pred -HHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEC-C---------HHH
T ss_conf -99999999984655444436552358986799999348886371799999999978986999823-3---------478
Q ss_pred CCCCHHHHHHHHHC-CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC
Q ss_conf 56712899999832-788739999331554231177115566554060016813320103523644279999348655
Q gi|254780270|r 417 GSMPGRIIQSLKRA-KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN 493 (820)
Q Consensus 417 ga~pg~ii~~l~~~-~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~ 493 (820)
.| -|=|-=..+ ....||| +....+||||....-..-.+..+| +|++|=||--++
T Consensus 180 Aa---AiEQL~~w~er~gv~vI--------~~~~G~DpAaVafDAi~~Akar~~------------DvvliDTAGRLh 234 (340)
T COG0552 180 AA---AIEQLEVWGERLGVPVI--------SGKEGADPAAVAFDAIQAAKARGI------------DVVLIDTAGRLH 234 (340)
T ss_pred HH---HHHHHHHHHHHHCCEEE--------CCCCCCCCHHHHHHHHHHHHHCCC------------CEEEEECCCCCC
T ss_conf 99---99999999999599278--------259999808999999999997699------------999996755445
No 275
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.63 E-value=0.0055 Score=41.44 Aligned_cols=164 Identities=23% Similarity=0.389 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH--HCCCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHC--CCCCEEE
Q ss_conf 6735998605656502799999977--088249986188888---88835632001456712899999832--7887399
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKA--TGRQYVRMSLGGVYD---EADIRGHRRTYIGSMPGRIIQSLKRA--KRSNPLL 437 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~a--l~r~f~~islgg~~d---~~~i~gh~~ty~ga~pg~ii~~l~~~--~~~npv~ 437 (820)
..| +|+.|-|||||--+++.|.++ ..-||+-+.++-+.+ |+|+-|-.. ||--|--.++++-. .---.-.
T Consensus 336 ~~p-vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~---GafTga~~kG~~g~~~~A~gGtl 411 (606)
T COG3284 336 DLP-VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVA---GAFTGARRKGYKGKLEQADGGTL 411 (606)
T ss_pred CCC-EEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCC---CCCCCCHHCCCCCCCEECCCCCC
T ss_conf 787-68538765568999999985365569837998503447764677744576---56433001066554101578760
Q ss_pred EEECHHHHHHHCCCCHHHHHHHHCC--------CC-C-------------------CCCEE-EEECCCCCCCCCEEEEEE
Q ss_conf 9933155423117711556655406--------00-1-------------------68133-201035236442799993
Q gi|254780270|r 438 LLDEIDKMGSDLRGDPSAALLEVLD--------PA-Q-------------------NSSFV-DHYLEVEYDLSDVMFIMT 488 (820)
Q Consensus 438 ~ldeidk~~~~~~gdp~~allevld--------p~-q-------------------n~~f~-d~y~~~~~dls~v~fi~t 488 (820)
+||||.-|.-.. .|+||.||- -+ | +..|+ |-|+ -|+-.
T Consensus 412 FldeIgd~p~~~----Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyy----rL~~~----- 478 (606)
T COG3284 412 FLDEIGDMPLAL----QSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYY----RLNAF----- 478 (606)
T ss_pred HHHHHHHCHHHH----HHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHHH----HHCCE-----
T ss_conf 898761141899----99999998618252358852157799983467579999875971487888----74471-----
Q ss_pred CCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 4865544131172479982587868999899986089899862578131322899999997317741023478887999
Q gi|254780270|r 489 ANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMK 567 (820)
Q Consensus 489 an~~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~ 567 (820)
.+++ |||++|-+-| -++-+.+++.+- .-+.++++++..+. .|-.-.-+|+|.-.|..
T Consensus 479 --~i~l-P~lr~R~d~~----------------~~l~~~~~~~~~--~~~~l~~~~~~~l~-~~~WPGNirel~~v~~~ 535 (606)
T COG3284 479 --VITL-PPLRERSDRI----------------PLLDRILKREND--WRLQLDDDALARLL-AYRWPGNIRELDNVIER 535 (606)
T ss_pred --EECC-CCHHCCCCCH----------------HHHHHHHHHCCC--CCCCCCHHHHHHHH-HCCCCCCHHHHHHHHHH
T ss_conf --5506-8611046657----------------899999987268--77568999999998-57899828999999999
No 276
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=96.61 E-value=0.032 Score=35.67 Aligned_cols=51 Identities=20% Similarity=0.436 Sum_probs=25.9
Q ss_pred CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCC
Q ss_conf 73999933155423117711556655406001681332010352364427999934865544131172
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDR 501 (820)
Q Consensus 434 npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~dr 501 (820)
.=|+++|++|-+..+. +-.+||.+- . + +|+.+|.||..++.-.+-.++..+
T Consensus 161 ~iVviIDDLDRc~p~~----~v~~Le~Ik-----~----~----~d~~n~vfVLa~D~~~v~~al~~~ 211 (301)
T pfam07693 161 RIVVIIDDLDRCEPEE----AVELLEAVR-----L----L----FDFPNVVFILAYDEEIIKKAIEHN 211 (301)
T ss_pred CEEEEECCCCCCCHHH----HHHHHHHHH-----H----H----HCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 7899973655488789----999999999-----9----7----267981899975899999999987
No 277
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.02 Score=37.19 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
Q ss_conf 7888889999999875311025789999987654041587663-221068899877665201168999999999999842
Q gi|254780270|r 283 EAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSK-TKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV 361 (820)
Q Consensus 283 e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~-~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~ 361 (820)
..+....+++.-+++.+ --.|+||+..+|-++-.. +.+|+
T Consensus 163 ~f~~~~~~~~~~~e~~~--------~~~~~~~~~~~~~~~~~~~~~~~l------------------------------- 203 (407)
T PRK12726 163 DFMQAGRKQFKQVETAH--------LDDITDWFVPYLSGKLAVEDSFDL------------------------------- 203 (407)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCCCCCCCCEEEE-------------------------------
T ss_conf 24488999998873101--------534068999975389770320230-------------------------------
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 444673599860565650279999997708824998618
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLG 400 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islg 400 (820)
..|-|+.||||-|+|||+-.--+|.-+.+.-.++.|.
T Consensus 204 --~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LV 240 (407)
T PRK12726 204 --SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred --CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf --3690899989998978999999999999779917999
No 278
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.56 E-value=0.01 Score=39.45 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=63.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHH--HHCCCC-CEEEEEE
Q ss_conf 4673599860565650279999997708824998618888888835632001456712899999--832788-7399993
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSL--KRAKRS-NPLLLLD 440 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l--~~~~~~-npv~~ld 440 (820)
.+|.+++++||-|.|||++.+.|+-.+...--.|..++- ++-.|+.-+-|---|-+ .+|=.. ..+++||
T Consensus 24 ~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~--------~~i~y~~QLSgGqkqr~~la~al~~~p~iliLD 95 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCC--------CEEEEEHHCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 799999999899984999999984898898509999996--------089987007999999999999972599899995
Q ss_pred CHHHHHHHCCCCHHH--HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEE
Q ss_conf 315542311771155--665540600168133201035236442799993486554413117247998
Q gi|254780270|r 441 EIDKMGSDLRGDPSA--ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIR 506 (820)
Q Consensus 441 eidk~~~~~~gdp~~--allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~ 506 (820)
|- +..-||.+ .+.+.|- ++.+.+++.| -+++.-..+-||.-+++
T Consensus 96 EP-----t~~LD~~~~~~i~~~l~----------------~~~~tii~vs-Hd~~~~~~~~drii~l~ 141 (144)
T cd03221 96 EP-----TNHLDLESIEALEEALK----------------EYPGTVILVS-HDRYFLDQVATKIIELE 141 (144)
T ss_pred CC-----CCCCCHHHHHHHHHHHH----------------HCCCEEEEEE-CCHHHHHHHCCEEEEEE
T ss_conf 77-----55589999999999999----------------7099999996-79899998799999992
No 279
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=96.55 E-value=0.0034 Score=42.99 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 4467359986056565027999999770882
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
-.+|.+++|.|+-|.|||+++|+|+++||-.
T Consensus 12 l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~ 42 (123)
T pfam02367 12 LKAGDVVLLSGDLGAGKTTFVRGLAKGLGIT 42 (123)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 8999799998887788999999999985998
No 280
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=96.53 E-value=0.0067 Score=40.78 Aligned_cols=145 Identities=17% Similarity=0.292 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 32210688998776652011689999999999998424446735998605656502799999977088249986188888
Q gi|254780270|r 325 KTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD 404 (820)
Q Consensus 325 ~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d 404 (820)
-+...|.++-..++..+-...+....++.-+ +..+.++.++++.||||+||.|+-.+++..+-..=.++++=-|--
T Consensus 12 g~~~alar~itlvEs~~~~~~~~~~~ll~~l----~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDP 87 (325)
T PRK09435 12 GDRAALARAITLVESTRPDHRALAQELLDAL----LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 87 (325)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9998999999998679912489999999986----301798259974279998688999999999996798589999789
Q ss_pred H---------------HHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHH---HCCCCCC
Q ss_conf 8---------------883563200145671289999983278873999933155423117711556655---4060016
Q gi|254780270|r 405 E---------------ADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLE---VLDPAQN 466 (820)
Q Consensus 405 ~---------------~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~alle---vldp~qn 466 (820)
. .++-.|-..|+-+|| +.+.-|--+.+..| ++|-
T Consensus 88 sS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~-------------------------srg~lgg~~~~~~~~~~~~~a--- 139 (325)
T PRK09435 88 SSTRTGGSILGDKTRMERLSRHPNAFIRPSP-------------------------SSGTLGGVARKTRETMLLCEA--- 139 (325)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEECC-------------------------CCCCCCCCCHHHHHHHHHHHH---
T ss_conf 9998886101038888761479984884067-------------------------788867733549999999997---
Q ss_pred CCEEEEECCCCCCCCCEEEEEECCCC--CCC-HHHCCCEEEEEECCCCHH
Q ss_conf 81332010352364427999934865--544-131172479982587868
Q gi|254780270|r 467 SSFVDHYLEVEYDLSDVMFIMTANTL--NIP-LPLMDRMEIIRIAGYTEE 513 (820)
Q Consensus 467 ~~f~d~y~~~~~dls~v~fi~tan~~--~i~-~~l~drme~i~~~~y~~~ 513 (820)
..| +++||-|.-.= ++. .-+-|..=++.+||+-.+
T Consensus 140 ---------~g~---d~i~iETvGvGQ~e~~v~~~~d~~~~~~~p~~GD~ 177 (325)
T PRK09435 140 ---------AGF---DVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDE 177 (325)
T ss_pred ---------CCC---CEEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCH
T ss_conf ---------799---98999706777148899874266888835887608
No 281
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.52 E-value=0.0034 Score=43.04 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=26.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 446735998605656502799999977088249
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
..+|.+++++||+|||||+|.+-+.+...-.|.
T Consensus 4 ~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~ 36 (208)
T PRK00300 4 MRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQ 36 (208)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 418838999999988999999999972998689
No 282
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.048 Score=34.33 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=24.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 446735998605656502799999977088249986188
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
..+.+++.||||.|+|||+-+--+|.-+..+-.++.|-.
T Consensus 72 ~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia 110 (270)
T PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 799818999888989889999999999986799089998
No 283
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.50 E-value=0.01 Score=39.41 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC----CCHHHHCCCCCCCCCCCCHHHHH--HHHHCCCCCE-E
Q ss_conf 467359986056565027999999770882499861888----88888356320014567128999--9983278873-9
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV----YDEADIRGHRRTYIGSMPGRIIQ--SLKRAKRSNP-L 436 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~----~d~~~i~gh~~ty~ga~pg~ii~--~l~~~~~~np-v 436 (820)
.+|.|++|+||-|-|||++.+.|+-.+.-.--+|.+.|- .+..+.+-+.-.|+--+.|---| ++.+|=..|| +
T Consensus 24 ~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~~~~~gi~~v~qLSgG~~Qrv~iaral~~~p~l 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 79989999988998999999999577689857899999999999999999879948946998999999999999729999
Q ss_pred EEEECH
Q ss_conf 999331
Q gi|254780270|r 437 LLLDEI 442 (820)
Q Consensus 437 ~~ldei 442 (820)
++|||-
T Consensus 104 lilDEP 109 (163)
T cd03216 104 LILDEP 109 (163)
T ss_pred EEEECC
T ss_conf 999097
No 284
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.49 E-value=0.016 Score=38.00 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHH
Q ss_conf 59986056565027999999770---8824998618888888
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEA 406 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~ 406 (820)
++.+.||||+|||+|+..+|... +-+.+.++.++-.++-
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~ 42 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 989998999989999999999987639979999866644899
No 285
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.48 E-value=0.0083 Score=40.07 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=57.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH-HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHH
Q ss_conf 599860565650279999997708824998618888888-8356320014567128999998327887399993315542
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA-DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMG 446 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~-~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~ 446 (820)
++++.||||+|||||-..+.+.+-.+-.++++=-+ |.+ ... =||.-|-=++.-..+.+ |=.++-.+ -+
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlav-DPsS~~s------gGalLGDRiRm~~~~~~--~~vfiRs~--at 69 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAI-DPSSPFS------GGAILGDRIRMERHASD--PGVFIRSL--AT 69 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCC------CCCCHHHHHHHHHHCCC--CCEEEEEC--CC
T ss_conf 97625899787899999999999978983799996-8887866------86203235453441579--98368634--66
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--CCC-HHHCCCEEEEEECCCCH
Q ss_conf 3117711556655406001681332010352364427999934865--544-13117247998258786
Q gi|254780270|r 447 SDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--NIP-LPLMDRMEIIRIAGYTE 512 (820)
Q Consensus 447 ~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~i~-~~l~drme~i~~~~y~~ 512 (820)
.+..|..+.+..+.++-=.- ..| .++||=|.-.- +.. ..+-|..=++-.|++-.
T Consensus 70 rg~~ggla~~~~~~i~~l~~---------~g~---D~IiIETvGvGQse~~i~~~aD~~i~v~~p~~GD 126 (148)
T cd03114 70 RGFLGGLSRATPEVIRVLDA---------AGF---DVIIVETVGVGQSEVDIASMADTTVVVMAPGAGD 126 (148)
T ss_pred CCCCCCHHHHHHHHHHHHHH---------CCC---CEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCC
T ss_conf 66542046889999999997---------599---9899974877756026554356699996368873
No 286
>KOG0477 consensus
Probab=96.46 E-value=0.0067 Score=40.78 Aligned_cols=232 Identities=21% Similarity=0.291 Sum_probs=119.8
Q ss_pred HHHHCHHHHHHHHHHHHHHHH-HC----CCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC--HHHHCC
Q ss_conf 652011689999999999998-42----4446735-998605656502799999977088249986188888--888356
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQM-RV----IKNKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD--EADIRG 410 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~-~~----~~~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d--~~~i~g 410 (820)
-..||++.||--+---|.=+. .+ .+.+|-| ++|+|-||+||...-|-+++.-.|-...-..|.-.= -|..+-
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K 528 (854)
T KOG0477 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred CHHHCHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEE
T ss_conf 24314589999999998568756889874451440289846998228999999986275316850677543332688751
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCC--------
Q ss_conf 320014567128999998327887399993315542311771155665540600168133201035236442--------
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSD-------- 482 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~-------- 482 (820)
| -|+--|-.=--||.- .--.|-|+||.|||...-|-..--||= |- .+-.||
T Consensus 529 d---PvtrEWTLEaGALVL--ADkGvClIDEFDKMndqDRtSIHEAME------QQ----------SISISKAGIVtsLq 587 (854)
T KOG0477 529 D---PVTREWTLEAGALVL--ADKGVCLIDEFDKMNDQDRTSIHEAME------QQ----------SISISKAGIVTSLQ 587 (854)
T ss_pred C---CCCCEEEECCCEEEE--CCCCEEEEEHHHHHCCCCCCHHHHHHH------HC----------CHHHHHHHHHHHHH
T ss_conf 7---865303651672897--268537741211204011015999987------51----------20144666899887
Q ss_pred --EEEEEECCCC--------------CCCHHHCCCEEEEEECCCC----HHHHHH--HHHHH--HHHHHHHHHCCCCCCC
Q ss_conf --7999934865--------------5441311724799825878----689998--99986--0898998625781313
Q gi|254780270|r 483 --VMFIMTANTL--------------NIPLPLMDRMEIIRIAGYT----EEEKLQ--IAKNH--LVKKVLTEHALKQEEC 538 (820)
Q Consensus 483 --v~fi~tan~~--------------~i~~~l~drme~i~~~~y~----~~ek~~--i~~~~--l~p~~~~~~~~~~~~~ 538 (820)
+..|++||-. +...|.+.|..|.-+---+ .+||+. +...| .-|+-.++-|+.+.++
T Consensus 588 ArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~ 667 (854)
T KOG0477 588 ARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQM 667 (854)
T ss_pred HHHHHHEECCCCCCCCCCCCCHHHCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 55443000277777568751143305544441211132456403558136788999998767404876444676543234
Q ss_pred C-----CCHHHHHHHHHCCCCCCHHH-HHHH----HHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 2-----28999999973177410234-7888----79999898765421178520127967867530
Q gi|254780270|r 539 C-----ISDGVLLDIIRLFTHEAGVR-SFER----ALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 539 ~-----~~~~~i~~ii~~Yt~EaGvR-~l~r----~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
. ++.+++++.|. |.+|- || .|.. .+.+++-..-.+-.. ...+-||...++-.+
T Consensus 668 ~~~v~~ipq~lLrkyI~-yar~~-v~PkL~q~d~~K~s~vya~lRkES~~--tGs~piTvRHieS~i 730 (854)
T KOG0477 668 PARVEPIPQELLRKYII-YAREK-VRPKLNQMDMDKISSVYADLRKESMA--TGSLPITVRHIESMI 730 (854)
T ss_pred CCCCCCCHHHHHHHHHH-HHHHH-CCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHH
T ss_conf 56666683999999999-99975-25001011378899999999761556--688503399999999
No 287
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.45 E-value=0.079 Score=32.68 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=63.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHCHHHHHH
Q ss_conf 99852224788578888899999998753110257899999876540415876632210688-99877665201168999
Q gi|254780270|r 271 FEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDF-AIRILDQDHFGLEKVKE 349 (820)
Q Consensus 271 l~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~-a~~iLd~~hyGl~~vK~ 349 (820)
|...+-.++++++..-.+-+|+++.=.-. +...-..-+|.+ +.+.|-+.-| +++-+
T Consensus 22 l~rslt~~gi~~~~A~~ia~ei~~~L~~~---------------------~~~~i~~~el~~~v~~~l~~~~~--~~~a~ 78 (306)
T PRK04220 22 LARSLTAAGMKPDLAYEIASEIEEELKKE---------------------GITKITKEELRRRVYYKLIEKDY--EEIAE 78 (306)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHC---------------------CCEEECHHHHHHHHHHHHHHHCC--HHHHH
T ss_conf 99999980898889999999999999865---------------------77163599999999999998440--99999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 9999999998424446735998605656502799999977088249
Q gi|254780270|r 350 RIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 350 rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
-|+..+.+.....+-|+++.|.+||||++||-.+|.-||.+-+
T Consensus 79 ---rY~~~r~~r~~~~pliILigGtsGvGKSTlA~~LA~rLgI~~v 121 (306)
T PRK04220 79 ---KYLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSV 121 (306)
T ss_pred ---HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf ---9999999853699879998589988789999999997098834
No 288
>KOG1942 consensus
Probab=96.45 E-value=0.0028 Score=43.63 Aligned_cols=51 Identities=35% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 4413117247998258786899989998608989986257813132289999999731774
Q gi|254780270|r 494 IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTH 554 (820)
Q Consensus 494 i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~ 554 (820)
||.-|+||+-+|..-.|+.+|-.+|.+.- .+.+.+.++++++..+.+--|+
T Consensus 351 ip~dllDRl~Iirt~~y~~~e~r~Ii~~R----------a~~E~l~~~e~a~~~l~~~gt~ 401 (456)
T KOG1942 351 IPPDLLDRLLIIRTLPYDEEEIRQIIKIR----------AQVEGLQVEEEALDLLAEIGTS 401 (456)
T ss_pred CCHHHHHHEEEEEECCCCHHHHHHHHHHH----------HHHHCCEECHHHHHHHHHHCCC
T ss_conf 99778612667860369989999999998----------7651423228899998760541
No 289
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0027 Score=43.79 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 59986056565027999999770882499861888888883563200145671289999983278
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~ 432 (820)
-+++.||||.|||++|+-||+.+ ++..+|.|-+--++--.+ +--|+-++..+..+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~r~~~~~~-------t~lg~~~k~~i~~g~ 57 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDILRAAIAER-------TELGEEIKKYIDKGE 57 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCEECCCCCCCHHHCCC-------CHHHHHHHHHHHCCC
T ss_conf 79998999998899999999976--997855220111100323-------689999999987589
No 290
>pfam01768 Birna_VP4 Birnavirus VP4 protein. VP4 is a viral protease. The large RNA segment of birnaviruses codes for a polyprotein (N-VP2-VP4-VP3-C).
Probab=96.44 E-value=0.0052 Score=41.60 Aligned_cols=65 Identities=35% Similarity=0.388 Sum_probs=48.4
Q ss_pred CEEE-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEE
Q ss_conf 1474-4888847888730689999999998368887561066368503025000656899999997099699
Q gi|254780270|r 680 IHVH-VPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKV 750 (820)
Q Consensus 680 iHih-~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~v 750 (820)
|-+- .|.|.+ -|||+-++|. +++-+.+-.|+. .|||||+.=. .|.||-|+.-|..|||+-|+.-+
T Consensus 179 i~v~k~~~~pi--~G~S~qLai~--l~~~~~~~gVP~-~afTG~l~~~-sv~~I~gv~iKa~aAh~lGLpL~ 244 (264)
T pfam01768 179 IVVSKIPAGPI--MGPSAQLAIY--ALVDDIKEGVPR-MAFTGELVGD-SVGEICGVDIKLIAAHELGLPLL 244 (264)
T ss_pred EEEEECCCCCC--CCCHHHHHHH--HHHHHHCCCCCE-EEEEEEECCC-CEEEEECCCHHHHHHHHCCCCCC
T ss_conf 68751347875--5843455699--987510048872-8885102377-35404030122333554288511
No 291
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=96.44 E-value=0.0015 Score=45.62 Aligned_cols=22 Identities=50% Similarity=0.841 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7359986056565027999999
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIA 387 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia 387 (820)
|-=|.|+||||+|||-+|+-+.
T Consensus 213 GHNlll~GPPGsGKTmla~r~~ 234 (505)
T TIGR00368 213 GHNLLLLGPPGSGKTMLASRLQ 234 (505)
T ss_pred CCCEEEECCCCCCHHHHHHHHH
T ss_conf 5643767824962689998751
No 292
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.42 E-value=0.024 Score=36.65 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-----EEC-CCCCCHHHHC--------CCCCCCC
Q ss_conf 9999999984244467359986056565027999999770882499-----861-8888888835--------6320014
Q gi|254780270|r 351 IIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVR-----MSL-GGVYDEADIR--------GHRRTYI 416 (820)
Q Consensus 351 ile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~-----isl-gg~~d~~~i~--------gh~~ty~ 416 (820)
+++|++ .+.....-|+.+.|||||||.++|+-++.+|.|.+.. +.+ |...+-+.++ |---||=
T Consensus 70 ~~~~l~---~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD 146 (283)
T COG1072 70 LLRFLG---TNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYD 146 (283)
T ss_pred HHHHHC---CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 999834---66888887999605766557789999999996388987337871454546767752212200189985356
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 5671289999983
Q gi|254780270|r 417 GSMPGRIIQSLKR 429 (820)
Q Consensus 417 ga~pg~ii~~l~~ 429 (820)
-+-==+++..+|.
T Consensus 147 ~~~ll~fl~~vK~ 159 (283)
T COG1072 147 VAALLRFLSDVKA 159 (283)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999999965
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.38 E-value=0.1 Score=31.89 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=66.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC-CCEEEEEE
Q ss_conf 44467359986056565027999999770882499861888888883563200145671289999983278-87399993
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR-SNPLLLLD 440 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~-~npv~~ld 440 (820)
+..++.++.|||.-|+|||+-+--+|.-+.++..++-|... | ||- |+-+=|--.-+.. .-|++
T Consensus 93 ~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaa-D---------t~R---paA~eQL~~la~~~~v~~~--- 156 (433)
T PRK00771 93 ILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICA-D---------TWR---PGAYEQLKQLCEKINVPFY--- 156 (433)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-C---------CCC---HHHHHHHHHHHHHCCCCCC---
T ss_conf 66898589997378897899999999999977994678506-7---------883---6899999999986388731---
Q ss_pred CHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCE
Q ss_conf 31554231177115566554060016813320103523644279999348655441311724
Q gi|254780270|r 441 EIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRM 502 (820)
Q Consensus 441 eidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drm 502 (820)
+.....||.+..-+-+. .|.+ | +|++|=||--+++...|.+-|
T Consensus 157 -----~~~~~~dp~~i~~~a~~-----~~k~------~---DvviiDTAGRl~~d~~Lm~El 199 (433)
T PRK00771 157 -----GDPKEKDAVKIVKEGLE-----KLKK------V---DVIIVDTAGRHKLEKDLIEEM 199 (433)
T ss_pred -----CCCCCCCHHHHHHHHHH-----HHCC------C---CEEEEECCCCCCCCHHHHHHH
T ss_conf -----78899999999999999-----8456------9---889997765210409999999
No 294
>PRK07263 consensus
Probab=96.34 E-value=0.11 Score=31.71 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=32.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCC
Q ss_conf 24446735998605656502799999977----088249986188
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA----TGRQYVRMSLGG 401 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~a----l~r~f~~islgg 401 (820)
.+=.+|..+-+.|.||+|||++|-.||.- -|.+...+||==
T Consensus 198 ~Gl~~GdLiviaaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEM 242 (453)
T PRK07263 198 TGLHPDQLIILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEM 242 (453)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 289978689997278884789999999999985598289992469
No 295
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.30 E-value=0.0059 Score=41.18 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 735998605656502799999977088249986
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMS 398 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f~~is 398 (820)
|.++.|+||+|+|||+|.+-+.+-...-+.-+|
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs 33 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSIS 33 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 939999899988999999999976899448870
No 296
>PRK07261 topology modulation protein; Provisional
Probab=96.28 E-value=0.0051 Score=41.71 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=26.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860565650279999997708824998
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
++.+|+||.|||++|+-+|+.+|.|++-+
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~L 31 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHL 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 99988999868999999999879797970
No 297
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0038 Score=42.67 Aligned_cols=78 Identities=33% Similarity=0.442 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH----HHHCCCCCCCCCCCCHHHHH--HHHHCCCC-CEE
Q ss_conf 467359986056565027999999770882499861888888----88356320014567128999--99832788-739
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDE----ADIRGHRRTYIGSMPGRIIQ--SLKRAKRS-NPL 436 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~----~~i~gh~~ty~ga~pg~ii~--~l~~~~~~-npv 436 (820)
.+|.+++++||-|.|||++.+.|+-.+...--.|.+.|..-. .++|- +--|+.-+-|---| ++.++=.. -++
T Consensus 23 ~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~QLSgGqkqrv~iA~al~~~p~i 101 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR-RIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 799799998788999899999995884799628999999999799999994-0608766886999999999999709999
Q ss_pred EEEECH
Q ss_conf 999331
Q gi|254780270|r 437 LLLDEI 442 (820)
Q Consensus 437 ~~ldei 442 (820)
++|||.
T Consensus 102 lilDEP 107 (157)
T cd00267 102 LLLDEP 107 (157)
T ss_pred EEEECC
T ss_conf 999698
No 298
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.0078 Score=40.29 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=34.0
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 999998424446735998605656502799999977088249
Q gi|254780270|r 354 YLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 354 ~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
|+--+...+-..+-|+++=|+|||||||||..||.-||..-+
T Consensus 77 Y~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 77 YLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 999999861578759996178877725799999997298610
No 299
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0047 Score=41.98 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=38.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC-CCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEE
Q ss_conf 59986056565027999999770882499861888-8888835632001456712899999832788739
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV-YDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPL 436 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~-~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv 436 (820)
++..-||||.|||++++-||+-||.+| +|-|-+ |+-|.=+ |+=+..+-+....||=
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~--vsaG~iFR~~A~e~-----------gmsl~ef~~~AE~~p~ 58 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL--VSAGTIFREMARER-----------GMSLEEFSRYAEEDPE 58 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCE--EECCHHHHHHHHHC-----------CCCHHHHHHHHHCCCH
T ss_conf 799617999970279999999829715--62127999999983-----------9999999998751921
No 300
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.20 E-value=0.014 Score=38.44 Aligned_cols=39 Identities=18% Similarity=0.425 Sum_probs=35.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 673599860565650279999997708824998618888
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY 403 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~ 403 (820)
.|.||.|.|++--||||||+.|-..+.+||.-+|+-...
T Consensus 1 ~G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~ 39 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf 974999868998988999999998476756884185898
No 301
>PRK04040 adenylate kinase; Provisional
Probab=96.18 E-value=0.011 Score=39.17 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=33.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC-----------CCCCHHHHC
Q ss_conf 73599860565650279999997708824998618-----------888888835
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLG-----------GVYDEADIR 409 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f~~islg-----------g~~d~~~i~ 409 (820)
+.+..++|-|||||||+.+-..+-|.-.|.-++.| ++.|..|+|
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~vn~G~~M~e~A~~~glv~~RDemR 56 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMR 56 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCHHHHC
T ss_conf 4189997589887899999999972358759867799999999817734778874
No 302
>PRK08118 topology modulation protein; Reviewed
Probab=96.18 E-value=0.0057 Score=41.32 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=26.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860565650279999997708824998
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
++.+|+||.|||++|+-+|+.+|.|++-+
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~L 32 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHL 32 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 99988999879999999999889697964
No 303
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=96.18 E-value=0.012 Score=39.00 Aligned_cols=114 Identities=23% Similarity=0.344 Sum_probs=59.4
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC------------C---HHHHCCCCCCCCCCCCHHHH
Q ss_conf 42444673599860565650279999997708824998618888------------8---88835632001456712899
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY------------D---EADIRGHRRTYIGSMPGRII 424 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~------------d---~~~i~gh~~ty~ga~pg~ii 424 (820)
+..+.++.++++.||||+||.|+--.+...+-.+-.++++=-|- | -.++-.|.+.|+-+||
T Consensus 23 ~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~---- 98 (267)
T pfam03308 23 MPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSP---- 98 (267)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECC----
T ss_conf 7435995599876899887999999999999968986899997899988886300107777650589985886457----
Q ss_pred HHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHH---HCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--CCC-HHH
Q ss_conf 99983278873999933155423117711556655---406001681332010352364427999934865--544-131
Q gi|254780270|r 425 QSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLE---VLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--NIP-LPL 498 (820)
Q Consensus 425 ~~l~~~~~~npv~~ldeidk~~~~~~gdp~~alle---vldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~i~-~~l 498 (820)
+.+.-|--+.+.-| ++|- ..| ++.||-|--.= ++. .-+
T Consensus 99 ---------------------srg~lGGls~~t~~~i~llea------------aGf---D~IivETVGVGQsE~~v~~~ 142 (267)
T pfam03308 99 ---------------------SRGALGGLSRATREAILLLDA------------AGF---DVIIIETVGVGQSEVDIANM 142 (267)
T ss_pred ---------------------CCCCCCCCCHHHHHHHHHHHH------------CCC---CEEEEECCCCCCCCHHHHHH
T ss_conf ---------------------788888714769999999997------------799---99999247777530355541
Q ss_pred CCCEEEEEECCCCHH
Q ss_conf 172479982587868
Q gi|254780270|r 499 MDRMEIIRIAGYTEE 513 (820)
Q Consensus 499 ~drme~i~~~~y~~~ 513 (820)
-|-+=++.+||.-.+
T Consensus 143 aD~~llv~~Pg~GDe 157 (267)
T pfam03308 143 ADTFVLVTIPGGGDD 157 (267)
T ss_pred CCEEEEEECCCCCHH
T ss_conf 576899955887608
No 304
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.15 E-value=0.051 Score=34.12 Aligned_cols=176 Identities=22% Similarity=0.285 Sum_probs=93.6
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf 789998522247-8857888889999999875311025789999987654041587663221068899877665201168
Q gi|254780270|r 268 ISDFEARISKIR-LSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEK 346 (820)
Q Consensus 268 i~el~~Ki~~~~-lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~ 346 (820)
++.|..+++... -++.++..+.+++++|..- +.. -++...+.- .++
T Consensus 4 ~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~---------------l~~-~~~~~~~~~------~~~----------- 50 (361)
T pfam03969 4 PQRYTAQLQRGAIFPDVAQANAVPALDRLYQR---------------LQA-ADFVRQSGA------GGK----------- 50 (361)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH---------------HHH-CCCCCCCCH------HHH-----------
T ss_conf 99999998679999998999999999999999---------------971-556555523------444-----------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEE----CCCCCCH-HHHCCCCCCCCCCCC
Q ss_conf 9999999999998424446735998605656502799999977088-249986----1888888-883563200145671
Q gi|254780270|r 347 VKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMS----LGGVYDE-ADIRGHRRTYIGSMP 420 (820)
Q Consensus 347 vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~is----lgg~~d~-~~i~gh~~ty~ga~p 420 (820)
+ ..+........-|-+.|+.|.|||-|--..-.++.- .=-|+. +-.+|++ ..++|. .-|
T Consensus 51 --------~-~~~~~~~~~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~~------~dp 115 (361)
T pfam03969 51 --------L-WGRKRSHQPVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQGG------DDP 115 (361)
T ss_pred --------H-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC------CCC
T ss_conf --------3-1578879999868988998886999999999867753444566789999999999997667------763
Q ss_pred HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C------
Q ss_conf 289999983278873999933155423117711556655406001681332010352364427999934865-5------
Q gi|254780270|r 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N------ 493 (820)
Q Consensus 421 g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~------ 493 (820)
|-...++--..-.|+.|||.- --|++.||+= ..+-+.+ |+ ..|..|+|.|.. +
T Consensus 116 --l~~va~~l~~~~~lLCfDEFq------V~DIaDAMIL-------~rLf~~L----f~-~gvvlV~TSN~~P~~LY~~G 175 (361)
T pfam03969 116 --LPIAADRFANEARLLCFDEFE------VDDIGDAMIL-------GRLFEAL----FA-RGVSLVATSNTAPEQLYRNG 175 (361)
T ss_pred --HHHHHHHHHHCCCEEEEEEEE------ECCHHHHHHH-------HHHHHHH----HH-CCCEEEEECCCCHHHHHCCC
T ss_conf --899999997258779976356------1678889999-------9999999----97-79789980899989983687
Q ss_pred ------CCH--HHCCCEEEEEECCCC
Q ss_conf ------441--311724799825878
Q gi|254780270|r 494 ------IPL--PLMDRMEIIRIAGYT 511 (820)
Q Consensus 494 ------i~~--~l~drme~i~~~~y~ 511 (820)
+|. -|.++++|+++.|-+
T Consensus 176 LqR~~FlPfI~ll~~~~~v~~l~~~~ 201 (361)
T pfam03969 176 LNRQRFLPAIDLLESHFEVVRVDGPV 201 (361)
T ss_pred CCHHHHHHHHHHHHHHCEEEEECCCC
T ss_conf 41778899999999867899815987
No 305
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.12 E-value=0.013 Score=38.64 Aligned_cols=91 Identities=29% Similarity=0.349 Sum_probs=48.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC-----------------CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 6735998605656502799999977088-----------------24998618888888835632001456712899999
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGR-----------------QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSL 427 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r-----------------~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l 427 (820)
+|.++.+.||-|-|||++-|+|+-++.- ++..+......+ .+-|..+. --++...+
T Consensus 20 ~g~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lSgg~~~-----~~~l~~~l 92 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRL--QLSGGEKE-----LSALALIL 92 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHEEEEEECCC--CCCCCHHH-----HHHHHHHH
T ss_conf 986899989987757999999999999863267752555427764023057664120--00542999-----99999999
Q ss_pred HHCCC-CCEEEEEECHHHHHHHCCC-CHHHHHHHHCC
Q ss_conf 83278-8739999331554231177-11556655406
Q gi|254780270|r 428 KRAKR-SNPLLLLDEIDKMGSDLRG-DPSAALLEVLD 462 (820)
Q Consensus 428 ~~~~~-~npv~~ldeidk~~~~~~g-dp~~allevld 462 (820)
..+.. ..++++|||+.+=.....| .-+.|++|.++
T Consensus 93 ~~~~~~~~~lillDE~~~Gtd~~~~~~l~~~i~~~~~ 129 (162)
T cd03227 93 ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129 (162)
T ss_pred HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8542489848996365579998899999999999997
No 306
>PRK10646 putative ATPase; Provisional
Probab=96.11 E-value=0.0092 Score=39.75 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 467359986056565027999999770882
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
..|.+++|.|+-|.|||+++|.|+++||.+
T Consensus 26 ~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~ 55 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999799998888789999999999984997
No 307
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.11 E-value=0.0065 Score=40.89 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 4673599860565650279999997708824998618888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY 403 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~ 403 (820)
..|.++|++||-|.|||+|-|.|+-.+.-.--.|.+.|..
T Consensus 35 ~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~p~~G~I~~~g~~ 74 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKT 74 (214)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEE
T ss_conf 1898999999999879999999976977884199999999
No 308
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.09 E-value=0.0089 Score=39.85 Aligned_cols=59 Identities=24% Similarity=0.446 Sum_probs=40.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 59986056565027999999770882499861888888883563200145671289999983278873
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np 435 (820)
.|.|.||||.||++.|+-+|+-+|-++ ||.|-+ +|-+-+. ++--|+-++.++..|-.=|
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~h--iStGdl-----lR~~i~~--~t~lg~~ik~~i~~G~LVp 60 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKH--INMGNI-----LRDEIKK--ESNIGKEIHKVVRSGNLVA 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEE--ECHHHH-----HHHHHHC--CCHHHHHHHHHHHCCCCCC
T ss_conf 799989999987999999999879906--878999-----9999973--9988999999997798466
No 309
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.06 E-value=0.0079 Score=40.23 Aligned_cols=32 Identities=34% Similarity=0.613 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 46735998605656502799999977088249
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
.+.+|+..=||.|.||+|+||-+|+.||-.|.
T Consensus 2 ~~~iIIaIDGpagSGKST~ak~lA~~L~~~yl 33 (225)
T PRK00023 2 MKAPVIAIDGPAGSGKGTVAKILAKKLGFHYL 33 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 98978996589867878999999999398876
No 310
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.06 E-value=0.047 Score=34.39 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCC----------CC
Q ss_conf 99999999998424446735998605656502799999977088249986188888888356320014----------56
Q gi|254780270|r 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYI----------GS 418 (820)
Q Consensus 349 ~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~----------ga 418 (820)
..+.+||.-. -..+..| +++||+|.|||++.++++..+....-.+ -+.|..|+.=+....+ +.
T Consensus 12 ~~~~~~L~~~---v~~~~nI-lIsG~tGSGKTTll~al~~~i~~~~riv---tiEd~~El~l~~~~~v~l~~~~~~~~~~ 84 (186)
T cd01130 12 PLQAAYLWLA---VEARKNI-LISGGTGSGKTTLLNALLAFIPPDERII---TIEDTAELQLPHPNWVRLVTRPGNVEGS 84 (186)
T ss_pred HHHHHHHHHH---HHCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCEE---EECCCHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 9999999999---9859989-9989999989999999996133456459---8415354047777568888604645786
Q ss_pred CCHHHHHHHHHCCCCCE-EEEEECHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 71289999983278873-999933155423117711556655406
Q gi|254780270|r 419 MPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDLRGDPSAALLEVLD 462 (820)
Q Consensus 419 ~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~~gdp~~allevld 462 (820)
..=-.-++++.+--+|| .+++.|+ ||.-+.++++...
T Consensus 85 ~~~~~~~li~~aLR~~pd~iivGEi-------R~~Ea~~~l~a~~ 122 (186)
T cd01130 85 GEVTMADLLRSALRMRPDRIIVGEV-------RGGEALDLLQAMN 122 (186)
T ss_pred CEECHHHHHHHHCCCCCCEEECCCC-------CCHHHHHHHHHHH
T ss_conf 5034999988736689973731756-------8399999999997
No 311
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.05 E-value=0.14 Score=30.70 Aligned_cols=180 Identities=22% Similarity=0.326 Sum_probs=112.8
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCC
Q ss_conf 52011689999999999998424446735998605656502799999977088249986188888888356320014567
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSM 419 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~ 419 (820)
+--|.+.+|+.+++-. ........+.-.+|.|.-|+||.|+.|.+-...+-+.-| |=-|+ -.+| -++
T Consensus 61 ~l~Gvd~qk~~L~~NT--~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr--LVEV~-k~dl--------~~L 127 (287)
T COG2607 61 DLVGVDRQKEALVRNT--EQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR--LVEVD-KEDL--------ATL 127 (287)
T ss_pred HHHCCHHHHHHHHHHH--HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCE--EEEEC-HHHH--------HHH
T ss_conf 8727318999999989--999728865236776377777479999999998741770--79976-8888--------657
Q ss_pred CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHH-HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHH
Q ss_conf 128999998327887399993315542311771155-66554060016813320103523644279999348655-4413
Q gi|254780270|r 420 PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSA-ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLP 497 (820)
Q Consensus 420 pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~-allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~ 497 (820)
| .|+.-|+..... =+++.|.+ |-+ .||-+. +|=-+||- ++.=-=.+|+|-+|.|--. ||+-
T Consensus 128 p-~l~~~Lr~~~~k-FIlFcDDL---SFe-~gd~~yK~LKs~LeG-----------~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 128 P-DLVELLRARPEK-FILFCDDL---SFE-EGDDAYKALKSALEG-----------GVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred H-HHHHHHHCCCCE-EEEEECCC---CCC-CCCHHHHHHHHHHCC-----------CCCCCCCEEEEEEECCCCCCCCHH
T ss_conf 9-999999618860-89995677---777-781389999998538-----------855688707999715875336276
Q ss_pred HCCCEEEE-EE-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 11724799-82-587868999899986089899862578131322899999997317741023
Q gi|254780270|r 498 LMDRMEII-RI-AGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558 (820)
Q Consensus 498 l~drme~i-~~-~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGv 558 (820)
..|+.--- ++ ++=+.+||+...-+ .||.-.-...+.+.-..||.+|..-.|+
T Consensus 191 ~~dn~~~~~eih~~eaveEKlSlSDR---------FGLwL~F~~~~Q~~YL~~V~~~a~~~~l 244 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKLSLSDR---------FGLWLSFYPCDQDEYLKIVDHYAKHFGL 244 (287)
T ss_pred HHHCCCCCCCCCHHHHHHHHHCHHHH---------CCEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 64277840235806778776254642---------3404503687889999999999998599
No 312
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.05 E-value=0.0052 Score=41.60 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 5998605656502799999977088249
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
|||.-|+-|+||||+++.+|+.+|-++.
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9899678567999999999998598210
No 313
>PRK05636 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.12 Score=31.17 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=30.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECC
Q ss_conf 4446735998605656502799999977----08824998618
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKA----TGRQYVRMSLG 400 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~a----l~r~f~~islg 400 (820)
+=.+|..+-+.|-||+|||++|-.||.. -|.+...+||=
T Consensus 263 Gl~~G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLE 305 (507)
T PRK05636 263 GLRGGQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLE 305 (507)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8883567999737878668999999999998769937997156
No 314
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.98 E-value=0.0081 Score=40.15 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+.|++||-|.|||+|-|+|+.-|.-.--.|-|.|.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~V~l~g~ 64 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 599799998998889999999986567888877999997
No 315
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.98 E-value=0.017 Score=37.65 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCCC
Q ss_conf 5998605656502799999977088-----2499861888
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGR-----QYVRMSLGGV 402 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r-----~f~~islgg~ 402 (820)
||+..|+||.|||++|+.|++.|++ ...-||+-|-
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 9897889987799999999998600269994899978787
No 316
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.97 E-value=0.0058 Score=41.25 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=18.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 359986056565027999999770
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al 390 (820)
+|+.|+||+||||||-.--+|.-+
T Consensus 1 ~Vi~lvGptGvGKTTTiaKLA~~~ 24 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999998999998899999999999
No 317
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.0082 Score=40.14 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=9.6
Q ss_pred CCEEEEEEEEECCCCC
Q ss_conf 9819999998048888
Q gi|254780270|r 124 EDFLEAITQVLPDPTE 139 (820)
Q Consensus 124 ~pyl~A~Ve~l~d~~~ 139 (820)
.+|.+|+|+.++|+-.
T Consensus 291 GDf~~adve~L~DPcP 306 (1077)
T COG5192 291 GDFRMADVEVLIDPCP 306 (1077)
T ss_pred CCCCHHHHHHCCCCCC
T ss_conf 6521100211478999
No 318
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.94 E-value=0.01 Score=39.49 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=29.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 46735998605656502799999977088249
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
.+|.-+.+.|+-|.|||++|+.+|+.||-+|.
T Consensus 1 ~~~~a~VVmGVsGsGKSTvg~~LA~~L~~~fi 32 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEE
T ss_conf 99857999828989989999999999598776
No 319
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.94 E-value=0.015 Score=38.07 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=23.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4467359986056565027999999770
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al 390 (820)
=..|.|..++||||+|||++|-.+|.+.
T Consensus 20 i~~G~itei~G~pG~GKTtl~lq~a~~~ 47 (224)
T PRK09361 20 IERGTITQIYGPPGSGKTNICIQLAVEA 47 (224)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8888799998999985999999999999
No 320
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.93 E-value=0.0072 Score=40.55 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHH-HHHHHCC
Q ss_conf 444673599860565650279999-9977088
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQS-IAKATGR 392 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~s-ia~al~r 392 (820)
+=.+|...++.||||+|||++|-. ++.|+.|
T Consensus 262 Gl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~ 293 (501)
T PRK09302 262 GFFRGSIILVSGATGTGKTLLVSKFAEAACRR 293 (501)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 97589469998899988899999999999865
No 321
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.91 E-value=0.0065 Score=40.87 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCC
Q ss_conf 7359986056565027999999770---88249986188888
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYD 404 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d 404 (820)
+.|++|+||+||||||-.--+|.-+ |++-.-|+.-.-|-
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~ 42 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRA 42 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 969999899999889999999999997799289997587768
No 322
>PRK04182 cytidylate kinase; Provisional
Probab=95.90 E-value=0.0092 Score=39.74 Aligned_cols=28 Identities=39% Similarity=0.699 Sum_probs=27.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 5998605656502799999977088249
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
+||+-||+|.|||++|+-+|+-||-+|+
T Consensus 2 ~ItI~g~~GSGk~tIak~LA~~lg~~~~ 29 (178)
T PRK04182 2 RITISGPPGSGKTTVARLLAEKLGLKLV 29 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 8999589988879999999999599387
No 323
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.89 E-value=0.044 Score=34.58 Aligned_cols=100 Identities=22% Similarity=0.391 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH--HCCCCCCCCCCCCH--HH
Q ss_conf 999999999998424446735998605656502799999977088249986188888888--35632001456712--89
Q gi|254780270|r 348 KERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD--IRGHRRTYIGSMPG--RI 423 (820)
Q Consensus 348 K~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~--i~gh~~ty~ga~pg--~i 423 (820)
-+.+.+||.... ..+| -++++||+|.|||++.+++...+..+-.||-. +.|..| +.+.....+.+-.+ -.
T Consensus 125 ~~~~~~~L~~~v---~~~~-~ilIsG~TGSGKTT~l~all~~i~~~~~riit--iED~~El~l~~~~~v~l~~~~~~~t~ 198 (283)
T pfam00437 125 DADIAEFLRQAV---QARG-NILVSGGTGSGKTTLLYALLNEINTDDERIVT--IEDPVEIQLEGPNQVQLNTRLAGVTF 198 (283)
T ss_pred HHHHHHHHHHHH---HCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE--ECCCCEECCCCCCEEEEEECCCCCCH
T ss_conf 599999999999---8197-59998899998899999999840877762787--33785231798878999855887699
Q ss_pred HHHHHHCCCCCE-EEEEECHHHHHHHCCCCHHHHHHHH
Q ss_conf 999983278873-9999331554231177115566554
Q gi|254780270|r 424 IQSLKRAKRSNP-LLLLDEIDKMGSDLRGDPSAALLEV 460 (820)
Q Consensus 424 i~~l~~~~~~np-v~~ldeidk~~~~~~gdp~~allev 460 (820)
-++++.+--++| +|++.|| ||..+..+|..
T Consensus 199 ~~ll~~~LR~~PD~IivGEi-------R~~Ea~~~l~a 229 (283)
T pfam00437 199 ADLLRAALRQRPDRIMVGEI-------RDGETADILRA 229 (283)
T ss_pred HHHHHHHHCCCCCEEEECCC-------CCHHHHHHHHH
T ss_conf 99999963889998975786-------99899999999
No 324
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=95.88 E-value=0.033 Score=35.54 Aligned_cols=195 Identities=25% Similarity=0.427 Sum_probs=109.5
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCC----CCC-------HH
Q ss_conf 652011689999999999998424446735998605656502799999977088-249986188----888-------88
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMSLGG----VYD-------EA 406 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~islgg----~~d-------~~ 406 (820)
++-|||++.=++|..|.+-........-.||.|.||-|-||.|++..+-+.|.+ |..+..-+| |++ +-
T Consensus 76 ~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~Lf~pd 155 (649)
T COG2766 76 NDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLHLFPPD 155 (649)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 65416899999999987524402116665530435678766789999998765278400366667688767886047977
Q ss_pred H-------HCCCCCCCC-CCCCHHHHHHHHH----------CCCCCEEEE------------------------EECHHH
Q ss_conf 8-------356320014-5671289999983----------278873999------------------------933155
Q gi|254780270|r 407 D-------IRGHRRTYI-GSMPGRIIQSLKR----------AKRSNPLLL------------------------LDEIDK 444 (820)
Q Consensus 407 ~-------i~gh~~ty~-ga~pg~ii~~l~~----------~~~~npv~~------------------------ldeidk 444 (820)
. --|-+|-|+ |.|+---...|.. +-..+|.++ .| |-|
T Consensus 156 ~l~~~l~~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi~~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~Vd-i~k 234 (649)
T COG2766 156 HLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDIEKFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGKVD-ISK 234 (649)
T ss_pred HHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHCCCEEEECCCCCCCCCCHHHHHCCCC-HHH
T ss_conf 7656654021624554158888778999887738740126888851122205302344899999834667604110-887
Q ss_pred HHHHCCCCHHH------------HHH--------------HHCCCCCCCCEE-EEEC-CCCCCCCCEEEEEECCCC----
Q ss_conf 42311771155------------665--------------540600168133-2010-352364427999934865----
Q gi|254780270|r 445 MGSDLRGDPSA------------ALL--------------EVLDPAQNSSFV-DHYL-EVEYDLSDVMFIMTANTL---- 492 (820)
Q Consensus 445 ~~~~~~gdp~~------------all--------------evldp~qn~~f~-d~y~-~~~~dls~v~fi~tan~~---- 492 (820)
+..--+.||-+ .|+ .+|--+|-.+|. +.=+ -+||| =+.++.-|..
T Consensus 235 L~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~~~~~i~~d---~lIvahsNesE~q~ 311 (649)
T COG2766 235 LEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTEGIGAIPFD---GLIVAHSNESEWQT 311 (649)
T ss_pred HHHCCCCCCHHHCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CEEEEECCCHHHHH
T ss_conf 865166882231444311004421789999972749999987353423755788876765667---60784167288887
Q ss_pred ---C-CCHHHCCCEEEEEECC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf ---5-4413117247998258---7868999899986089899862578131322899999
Q gi|254780270|r 493 ---N-IPLPLMDRMEIIRIAG---YTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLL 546 (820)
Q Consensus 493 ---~-i~~~l~drme~i~~~~---y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~ 546 (820)
| -..+++||.-++++|= ++.+.|+- -|.+.+..+.. ..+...+|+
T Consensus 312 fk~n~~nEAf~dRi~~v~vPY~L~vseE~kIY-------EKll~~s~ls~--~h~APhTL~ 363 (649)
T COG2766 312 FKNNKNNEAFLDRIYKVKVPYCLRVSEEAKIY-------EKLLQNSELSD--AHCAPHTLE 363 (649)
T ss_pred HHCCCCHHHHHHHEEEEECCEEEEECHHHHHH-------HHHHCCCCCCC--CCCCCHHHH
T ss_conf 50387348887410465455012321888999-------99825466665--665805899
No 325
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.87 E-value=0.012 Score=38.97 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=29.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 446735998605656502799999977088249
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
+....|+-+.|+-|.|||++|+.+|+.||.+|.
T Consensus 5 ~~~~~iiVVMGVsGsGKSTig~~LA~~l~~~fi 37 (177)
T PRK11545 5 NHDHHIYVLMGVSGSGKSAVASAVAHQLHAAFL 37 (177)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 788759999847989999999999998199855
No 326
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.86 E-value=0.011 Score=39.24 Aligned_cols=32 Identities=31% Similarity=0.667 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 46735998605656502799999977088249
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
.++||+++=||-|.||+|+||-+|+.||-.|.
T Consensus 282 ~~~~IIAIDGPAgSGKSTvAK~lA~~L~~~yL 313 (512)
T PRK13477 282 KRRPIIAIDGPAGAGKSTVTRAVAKKLGLLYL 313 (512)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 78877998678757878999999998199686
No 327
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.83 E-value=0.0079 Score=40.27 Aligned_cols=55 Identities=35% Similarity=0.540 Sum_probs=35.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 9986056565027999999770882499861888888883563200145671289999983278
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~ 432 (820)
+.|.||||.||++.|+-||+.+| |..||.|.+=- +++.- ++--|+.++.++..|.
T Consensus 3 iillG~PGsGKgTqa~~la~~~~--~~~is~GdllR-~~i~~------~s~~g~~i~~~~~~G~ 57 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLR-AAIKA------GTELGKEAKSYMDAGE 57 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CEEECHHHHHH-HHHHC------CCHHHHHHHHHHHCCC
T ss_conf 99989999987999999999869--91786889999-99873------9988999999997798
No 328
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.83 E-value=0.0071 Score=40.61 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.|.|++||-|+||||+-|+|+-.+...--+|.++|-
T Consensus 27 ~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~ 65 (237)
T COG0410 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE 65 (237)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 689889998999888899999985898788706998983
No 329
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.79 E-value=0.014 Score=38.34 Aligned_cols=126 Identities=25% Similarity=0.343 Sum_probs=61.6
Q ss_pred EEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCC---CCCCCCCHHHHHHHHHHHHH
Q ss_conf 997489972443256899999999999999998886299855742078147448888---47888730689999999998
Q gi|254780270|r 632 VIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGA---TPKDGPSAGIAMATAIVSIM 708 (820)
Q Consensus 632 ~~~~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga---~pKDGPSAGi~i~tal~S~~ 708 (820)
.+|. .|++.-.|.--+++.. =|..||+.+...+.. ...+...||-..-|.+. .|..||+. | +..+
T Consensus 236 aVM~-~G~Ivq~GtpeeI~~~---Pa~~yV~~F~~~v~~-~~~~~a~~i~~~~~~~~~~~~~~~~~~~------a-l~~m 303 (400)
T PRK10070 236 AIMQ-NGEVVQVGTPDEILNN---PANDYVRTFFRGVDI-SQVFSAKDIARRTPNGLIRKTPGFGPRS------A-LKLL 303 (400)
T ss_pred EEEE-CCEEEEECCHHHHHHC---CCCHHHHHHHCCCCH-HHCEEHHHHHCCCCCCEEECCCCCCHHH------H-HHHH
T ss_conf 9998-9889997288999867---998689987554778-7702398962468752131488869999------9-9999
Q ss_pred HCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHH-CCCEEEECCCHHHHHHHHH
Q ss_conf 368887561066368503025000656899999997099699803677550776148877-0979998193999888760
Q gi|254780270|r 709 TCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVK-NGLEIIPVSFMGEVLKHAL 787 (820)
Q Consensus 709 ~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~~-~~l~~~~v~~~~evl~~al 787 (820)
....++.-+-....=.+.|-|. + +.+..|...+ +.+. +... +-..+.+-..+.|++..+.
T Consensus 304 ~~~~~~~~~vvd~~~~~~G~v~----~-~~~~~~~~~~-----------~~~~---~~~~~~~~~v~~~~~l~~~~~~~~ 364 (400)
T PRK10070 304 QDEDREYGYVIERGNKFVGAVS----I-DSLKAALTQQ-----------QGLD---AALIDAPLAVDAQTPLSELLSHVG 364 (400)
T ss_pred HHCCCCEEEEECCCCEEEEEEE----H-HHHHHHHHCC-----------CCHH---HHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 8559867999869980889988----9-9999776337-----------7636---675058842399998999999997
Q ss_pred C
Q ss_conf 2
Q gi|254780270|r 788 L 788 (820)
Q Consensus 788 ~ 788 (820)
.
T Consensus 365 ~ 365 (400)
T PRK10070 365 Q 365 (400)
T ss_pred H
T ss_conf 2
No 330
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.008 Score=40.20 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=71.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEE-EECCC------CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 359986056565027999999770882499-86188------88888835632001456712899999832788739999
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVR-MSLGG------VYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLL 439 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~~-islgg------~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~l 439 (820)
|.+.|.|+||+|||+.|+..|++|.-+-.+ ++|+- ..||+.=.-| -+|.-+.--+-.. +..+-..|-..+-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~k-e~yres~~ks~~r-lldSalkn~~VIv 79 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILK-EVYRESFLKSVER-LLDSALKNYLVIV 79 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHHH-HHHHHHHHHHHHH-HHHHHHCCEEEEE
T ss_conf 5699826999880178999999999720011213201454123313240379-9999999888999-9999863649997
Q ss_pred ECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf 33155423117711556655406001681332010352364427999934865544131172479982587868999899
Q gi|254780270|r 440 DEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIA 519 (820)
Q Consensus 440 deidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~~~~y~~~ek~~i~ 519 (820)
|...=. +++|-+ |..+--+-|.+|-=-|+-.|.|+
T Consensus 80 DdtNYy-ksmRrq-----L~ceak~~~tt~ciIyl~~plDt--------------------------------------- 114 (261)
T COG4088 80 DDTNYY-KSMRRQ-----LACEAKERKTTWCIIYLRTPLDT--------------------------------------- 114 (261)
T ss_pred ECCCHH-HHHHHH-----HHHHHHHCCCCEEEEEECCCHHH---------------------------------------
T ss_conf 063288-899999-----99999863786599997268899---------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 98608989986257813132289999999731774102347888
Q gi|254780270|r 520 KNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFER 563 (820)
Q Consensus 520 ~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r 563 (820)
.++.| -.. .=-+++++++.++..|---.+-|-.++
T Consensus 115 -------c~rrN-~er-gepip~Evl~qly~RfEePn~~~rWDs 149 (261)
T COG4088 115 -------CLRRN-RER-GEPIPEEVLRQLYDRFEEPNPDRRWDS 149 (261)
T ss_pred -------HHHHH-CCC-CCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf -------98860-247-999989999999996149997765567
No 331
>PRK05595 replicative DNA helicase; Provisional
Probab=95.75 E-value=0.19 Score=29.80 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=31.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH--HH--CCCEEEEECCC
Q ss_conf 444673599860565650279999997--70--88249986188
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAK--AT--GRQYVRMSLGG 401 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~--al--~r~f~~islgg 401 (820)
+=.+|..+-+.|.||+|||++|-.||. |+ |.+...+||==
T Consensus 197 Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEM 240 (444)
T PRK05595 197 GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEM 240 (444)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99857779998579898079999999999986699379995889
No 332
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=95.74 E-value=0.031 Score=35.80 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 35998605656502799999977088249
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
..++|+||.|+|||+|.+.+.+.+.-.|.
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~~ 30 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKFG 30 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 86999898999999999999984866734
No 333
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.064 Score=33.35 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=31.3
Q ss_pred HCHHHHHHHHHHHHHHHHHCC----CCCCCEEEEECCCCCCHHHH-HHHHHH-HHC---CCEEEEEC
Q ss_conf 011689999999999998424----44673599860565650279-999997-708---82499861
Q gi|254780270|r 342 FGLEKVKERIIEYLAVQMRVI----KNKGLILCFVGPPGVGKTSL-AQSIAK-ATG---RQYVRMSL 399 (820)
Q Consensus 342 yGl~~vK~rile~lav~~~~~----~~~g~il~l~gppgvGKts~-~~sia~-al~---r~f~~isl 399 (820)
..+++.-..++..|+-+.-.. -.+|-|+.||||.|||||+- ||-=|+ +|. ++..-|+.
T Consensus 320 ~~~~~a~~~ll~~La~~Lpv~~~d~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~ 386 (557)
T PRK12727 320 TELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 386 (557)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7888999999999996287777751540764787437776731179999999999739981899972
No 334
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=95.73 E-value=0.014 Score=38.32 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=33.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 735998605656502799999977088249986188
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
|.||.|.|++--||||||+.|-..+..||.-+|+-.
T Consensus 1 G~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~ 36 (174)
T pfam07931 1 GRIILLNGGSSSGKSSIARALQDILDGPWLHFGVDA 36 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 919997489988879999999984747467642858
No 335
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.73 E-value=0.013 Score=38.60 Aligned_cols=70 Identities=27% Similarity=0.462 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHH--HHHHHHHCHHH-HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 9999876540415876632210688998--77665201168-99999999999984244467359986056565027999
Q gi|254780270|r 308 VRNYLDWLLGVPWDKKSKTKKNLDFAIR--ILDQDHFGLEK-VKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQ 384 (820)
Q Consensus 308 ~r~Yld~~~~lPW~~~t~~~~dl~~a~~--iLd~~hyGl~~-vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~ 384 (820)
+|||==.+..=||+.. +.|...|- .+.-++|||.+ +|||+.|- .. -++..||||-|||+.|.
T Consensus 217 lrn~RIvIarPPfSd~----~EITavRPvvk~~ledY~L~dkl~eRL~er---------ae--GILIAG~PGaGKsTFaq 281 (604)
T COG1855 217 LRNYRIVIARPPFSDR----WEITAVRPVVKLSLEDYGLSDKLKERLEER---------AE--GILIAGAPGAGKSTFAQ 281 (604)
T ss_pred ECCEEEEEECCCCCCC----EEEEEEEEEEEEEHHHCCCCHHHHHHHHHH---------HC--CEEEECCCCCCHHHHHH
T ss_conf 4357999945998776----289997136996055428798999998864---------16--46995699997468999
Q ss_pred HHHHHHCC
Q ss_conf 99977088
Q gi|254780270|r 385 SIAKATGR 392 (820)
Q Consensus 385 sia~al~r 392 (820)
++|+-+.+
T Consensus 282 AlAefy~~ 289 (604)
T COG1855 282 ALAEFYAS 289 (604)
T ss_pred HHHHHHHH
T ss_conf 99999986
No 336
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.023 Score=36.69 Aligned_cols=130 Identities=25% Similarity=0.394 Sum_probs=77.0
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEE
Q ss_conf 4244467359986056565027999999770882499861888888883563200145671289999983278873-999
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLL 438 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ 438 (820)
...........+.||||+|||.+++.+|.. +..| .+..|-.+.+- |.|.-.-+....+..+...+| ++.
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEF--LSINGPEILSK-------YVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCC--CCCCCCHHHHH-------HCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 706676421000368876503665676512-5410--13565224322-------2051089999998999863976364
Q ss_pred EECHHHHHHHCCCC-------HHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHH-----HCCCEEEE
Q ss_conf 93315542311771-------1556655406001681332010352364427999934865-54413-----11724799
Q gi|254780270|r 439 LDEIDKMGSDLRGD-------PSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLP-----LMDRMEII 505 (820)
Q Consensus 439 ldeidk~~~~~~gd-------p~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~-----l~drme~i 505 (820)
+||+|.+......+ -.+.|+...|.-. ... |+-+...|.. .+.+. ..||.-.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 82 IDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-------------RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-------------CCC-EEEEECCCCCCCHHHHHHCCHHHHHHHHH
T ss_conf 0443321234444421045789998998764246-------------563-46741344532112777531376788763
Q ss_pred EECCCCHH
Q ss_conf 82587868
Q gi|254780270|r 506 RIAGYTEE 513 (820)
Q Consensus 506 ~~~~y~~~ 513 (820)
.++.....
T Consensus 148 ~~~~~~~~ 155 (494)
T COG0464 148 NLPDEAGR 155 (494)
T ss_pred CCCCHHCC
T ss_conf 36541014
No 337
>PRK04328 hypothetical protein; Provisional
Probab=95.71 E-value=0.017 Score=37.77 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=28.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHH-HHHHHC--CCEEEEEC
Q ss_conf 444673599860565650279999-997708--82499861
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQS-IAKATG--RQYVRMSL 399 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~s-ia~al~--r~f~~isl 399 (820)
+=.+|.+.++.||||+|||.+|-. +++.+. .+...+|+
T Consensus 20 Glp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~ 60 (250)
T PRK04328 20 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 60 (250)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98799699998289999899999999999876997799997
No 338
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.71 E-value=0.011 Score=39.23 Aligned_cols=30 Identities=23% Similarity=0.575 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 599860565650279999997708824998
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
++...|+.|.|||++|+.+|+.+|-+|++=
T Consensus 1 liiv~GvsGsGKSTia~~La~~lg~~~i~~ 30 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEECC
T ss_conf 989991899999999999999719956415
No 339
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=95.70 E-value=0.2 Score=29.66 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 1689999999999998424-4467359986056565027999999
Q gi|254780270|r 344 LEKVKERIIEYLAVQMRVI-KNKGLILCFVGPPGVGKTSLAQSIA 387 (820)
Q Consensus 344 l~~vK~rile~lav~~~~~-~~~g~il~l~gppgvGKts~~~sia 387 (820)
+.++.+.|-.++.-.+... -..|.-++++|||-|||.||--.++
T Consensus 193 l~~l~~~i~~ll~~~~~g~~l~~G~~v~i~G~PN~GKSSL~N~L~ 237 (445)
T PRK05291 193 LEELIAELEKLLASAKQGELLREGLKVVIAGRPNVGKSSLLNALL 237 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999999998741786359869988999876899999985
No 340
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.67 E-value=0.027 Score=36.24 Aligned_cols=28 Identities=39% Similarity=0.675 Sum_probs=24.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4467359986056565027999999770
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al 390 (820)
=..|.|..+.|+||+|||+|+-.+|...
T Consensus 16 i~~G~it~i~G~pG~GKStl~lq~a~~~ 43 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8788799998999984999999999998
No 341
>PRK07667 uridine kinase; Provisional
Probab=95.65 E-value=0.038 Score=35.11 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHH
Q ss_conf 999984244467359986056565027999999770---8824998618888888
Q gi|254780270|r 355 LAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEA 406 (820)
Q Consensus 355 lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~ 406 (820)
|-|+.-.+..+ -|+...|+.|-|||++|..|++.| |.++..+++-+-....
T Consensus 4 ~~~~~~~~~~r-~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~~ 57 (190)
T PRK07667 4 INVMKKHKENR-FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVER 57 (190)
T ss_pred HHHHHHCCCCE-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 78998575986-9999779897889999999999986659837999666242658
No 342
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.65 E-value=0.012 Score=38.74 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++++.||-|.|||++.+.|+--+.-.--.|-+.|.
T Consensus 28 ~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~ 66 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGT 66 (218)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 699899999999986999999996699999649999999
No 343
>pfam00406 ADK Adenylate kinase.
Probab=95.63 E-value=0.011 Score=39.10 Aligned_cols=56 Identities=29% Similarity=0.541 Sum_probs=40.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 86056565027999999770882499861888888883563200145671289999983278873
Q gi|254780270|r 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 371 l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np 435 (820)
|.||||.||++.|+-+|+.+| |+.||.|-+-- ++++ -++--|+.|+.+..+|..=|
T Consensus 1 i~G~PGsGKgTqa~~La~~~~--~~~is~GdllR-~~~~------~~s~~g~~i~~~i~~G~lvp 56 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYG--IVHLSTGDLLR-AEVK------SGTELGKEAKEYMDKGELVP 56 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHC--CEEECHHHHHH-HHHH------CCCHHHHHHHHHHHCCCCCC
T ss_conf 918898985999999999859--90676999999-9986------28879999999998699543
No 344
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.62 E-value=0.021 Score=37.05 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=29.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH-H-HH--CCCEEEEECC
Q ss_conf 44467359986056565027999999-7-70--8824998618
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIA-K-AT--GRQYVRMSLG 400 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia-~-al--~r~f~~islg 400 (820)
+=.+|.+.++.||||+|||.+|...+ + |+ |.+.+.+|+.
T Consensus 15 Gi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~e 57 (231)
T pfam06745 15 GIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLE 57 (231)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9829969999858972599999999999998658968999813
No 345
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.60 E-value=0.21 Score=29.40 Aligned_cols=159 Identities=17% Similarity=0.262 Sum_probs=82.4
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH--HHHHHH--H-HH-HHHCCCCC-CCEEEEECCCCCCHHHHHHHH
Q ss_conf 65404158766322106889987766520116899--999999--9-99-98424446-735998605656502799999
Q gi|254780270|r 314 WLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVK--ERIIEY--L-AV-QMRVIKNK-GLILCFVGPPGVGKTSLAQSI 386 (820)
Q Consensus 314 ~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK--~rile~--l-av-~~~~~~~~-g~il~l~gppgvGKts~~~si 386 (820)
||-+|+|.-.. +....| .+++|-++-. ..+... + || +.+.|..+ -.+++|+|+.|.||||..+.+
T Consensus 1 yl~sl~WDG~~-------Ri~~l~-~~~~g~~d~~~~~~~~~~wligaVaR~~~pG~k~d~vlvL~G~QG~gKStf~~~L 72 (198)
T pfam05272 1 YLESLEWDGIP-------RIETLF-IDYLGAEDSLYTREVSKLFLIGAVARVYEPGCKFDHVLILQGAQGSGKSTFLKKL 72 (198)
T ss_pred CCCCCCCCCCC-------HHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 98568768811-------799999-9962999759999999999999999997789767767899889867899999997
Q ss_pred HHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 97708824998618888888835632001456712899999832788739999331554231177115566554060016
Q gi|254780270|r 387 AKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQN 466 (820)
Q Consensus 387 a~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn 466 (820)
+. .|+.=++....| . -.+..|.. +=++-|||++-++. .| .++ +--+=..+.
T Consensus 73 ~~----~~~~d~~~~~~~-------k---------D~~~~l~~----~wi~el~El~~~~k---~~-~~~-lK~fls~~~ 123 (198)
T pfam05272 73 GG----EWFTDSIRSFEG-------K---------DAYEKLQG----VWIVEIAELDGFSK---AE-VEA-IKAFITRTV 123 (198)
T ss_pred HH----HHCCCCCCCCCC-------C---------HHHHHHHH----HHHHHHHHHHHCCH---HH-HHH-HHHHHCCHH
T ss_conf 37----751565557677-------3---------89999998----78732598751365---32-999-999845413
Q ss_pred CCEEEEECCCCCC-CCCEEEEEECCCCC-CCHHH-CCCEEEEEECC
Q ss_conf 8133201035236-44279999348655-44131-17247998258
Q gi|254780270|r 467 SSFVDHYLEVEYD-LSDVMFIMTANTLN-IPLPL-MDRMEIIRIAG 509 (820)
Q Consensus 467 ~~f~d~y~~~~~d-ls~v~fi~tan~~~-i~~~l-~drme~i~~~~ 509 (820)
.+|+=-|=.-+.+ --+..||.|.|..+ ...|= --|.=+|+++.
T Consensus 124 d~~R~pY~~~~~~~pR~~vfigTtN~~~~L~D~TGnRRF~pi~v~~ 169 (198)
T pfam05272 124 DSFRAPYGRRAESFPRQCVFVGTTNRDEFLKDPTGNRRFWPVKVGK 169 (198)
T ss_pred HCCHHCCCCCCEECCEEEEEEEECCCCCCCCCCCCCEEEEEEEECC
T ss_conf 1231022356400654799999638876557999981689999688
No 346
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.60 E-value=0.013 Score=38.50 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC--CCHHHHCCCCCCCCC
Q ss_conf 59986056565027999999770882499861888--888883563200145
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV--YDEADIRGHRRTYIG 417 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~--~d~~~i~gh~~ty~g 417 (820)
+++++||+|+|||+|.+-+.+.+...|.+.----. ..+.|+.|..+-+|.
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~E~~G~dY~Fvs 52 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVS 52 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEC
T ss_conf 9999999988999999999851987768756603789988877896789867
No 347
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.014 Score=38.40 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=27.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++|++||-|.|||++.+.||--+.----+|-+.|
T Consensus 48 ~~GE~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I~~~G 85 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDG 85 (269)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89999999989984899999999759999975999999
No 348
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=95.59 E-value=0.034 Score=35.45 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=58.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE---------EEECCCCC-CHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 5998605656502799999977088249---------98618888-8888356320014567128999998327887399
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYV---------RMSLGGVY-DEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLL 437 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~---------~islgg~~-d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~ 437 (820)
+..++||-|+|||++|-++|+.+|-|.+ .++.|.-+ ..+|+.|.||-|....| +.++...++..|-.
T Consensus 3 l~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~igs~rp~~~El~gT~RiYL~~R~--l~~Gii~a~eA~~~- 79 (232)
T pfam01745 3 LYLIWGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPAELQGTRRIYLDNRP--LSEGIIDAEEAHDR- 79 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCC--CCCCCCCHHHHHHH-
T ss_conf 689978877771699999999959977962034430011367789997996575269861673--43466488999999-
Q ss_pred EEECHHHHHH
Q ss_conf 9933155423
Q gi|254780270|r 438 LLDEIDKMGS 447 (820)
Q Consensus 438 ~ldeidk~~~ 447 (820)
|++|++...+
T Consensus 80 Li~~V~~~~~ 89 (232)
T pfam01745 80 LIAEVTSHKD 89 (232)
T ss_pred HHHHHHCCCC
T ss_conf 9999960466
No 349
>PRK06904 replicative DNA helicase; Validated
Probab=95.53 E-value=0.22 Score=29.37 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH--H--HCCCEEEEECCCC
Q ss_conf 2444673599860565650279999997--7--0882499861888
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK--A--TGRQYVRMSLGGV 402 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~--a--l~r~f~~islgg~ 402 (820)
.+=.+|..+-+.|-||+|||++|-.||. | -+++...+||==-
T Consensus 216 ~Gl~~g~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM~ 261 (472)
T PRK06904 216 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 5887575799973798756899999999999955995799778799
No 350
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.52 E-value=0.016 Score=37.96 Aligned_cols=47 Identities=32% Similarity=0.434 Sum_probs=33.4
Q ss_pred HHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99984244-467359986056565027999999770882499861888
Q gi|254780270|r 356 AVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 356 av~~~~~~-~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
||..++=+ .+|.++||.||-|.|||++-+.||---.----+|.++|-
T Consensus 20 al~~isl~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~ 67 (352)
T COG3842 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE 67 (352)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 773214454488689998998888899999996777888865999999
No 351
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.014 Score=38.37 Aligned_cols=39 Identities=36% Similarity=0.517 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++|++||-|.|||++.+.||--+.----.|.+.|.
T Consensus 25 ~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~~G~I~~~G~ 63 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPPQHGSITLDGK 63 (255)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 699899999999846999999997599889971857996
No 352
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.51 E-value=0.018 Score=37.57 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++||+||-|.|||+|.+.||--+.-.-=+|.++|.
T Consensus 26 ~~GE~~~llGpSGsGKSTLlr~iaGL~~p~sG~I~~~G~ 64 (352)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT 64 (352)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 999899999999846999999997699999569999999
No 353
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.50 E-value=0.018 Score=37.48 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 986056565027999999770882
Q gi|254780270|r 370 CFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 370 ~l~gppgvGKts~~~sia~al~r~ 393 (820)
.|+|.||-|||++|+++...+-+.
T Consensus 3 VLcGLPaAGKTTLar~L~~~l~~~ 26 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRE 26 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 432698787368999999998644
No 354
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.49 E-value=0.018 Score=37.61 Aligned_cols=39 Identities=36% Similarity=0.619 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++||+||-|.|||++-+.||--..-.--+|.++|-
T Consensus 28 ~~Ge~~~llGpSG~GKtTlLr~iaGl~~p~~G~I~~~g~ 66 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66 (353)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899999999999535999999997699998739999999
No 355
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.49 E-value=0.016 Score=37.94 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 467359986056565027999999770
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al 390 (820)
.+|..++++||-|.|||+|.+.|+..+
T Consensus 25 ~~Ge~v~i~G~sGsGKSTLl~~l~Gl~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 899999999589998899999986987
No 356
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.0031 Score=43.28 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 46735998605656502799999977088
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGR 392 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r 392 (820)
.+|.++|++||-|.|||++++++..-+..
T Consensus 27 ~~Ge~~aiiG~SGsGKStl~k~llgll~~ 55 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89999999999987899999999579988
No 357
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.49 E-value=0.033 Score=35.58 Aligned_cols=35 Identities=31% Similarity=0.619 Sum_probs=30.6
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 24446735998605656502799999977088249
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
....+-||+..=||-|.||+|+||.+|+.||-.|.
T Consensus 437 ~~~~~~pIIaIDGpagsGKsT~ak~lA~~l~~~yl 471 (662)
T PRK11860 437 AAAARIPVICIDGPTASGKGTLAAAVAQALGYHYL 471 (662)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 34567878996578756868999999999599676
No 358
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.47 E-value=0.015 Score=38.13 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 467359986056565027999999770882499861
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSL 399 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~isl 399 (820)
.+-++|+++||-|+|||.||-.+|+.++ ..-||.
T Consensus 2 ~~~~ii~i~GpTasGKs~la~~la~~~~--~eIIsa 35 (304)
T PRK00091 2 MKPKLIVLVGPTASGKTALAIELAKRLN--GEIISV 35 (304)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC--CEEEEE
T ss_conf 9997799989886589999999999879--989941
No 359
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.018 Score=37.55 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+|++||-|.|||++.|.|+-.+.-.-=+|.+.|
T Consensus 25 ~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~ 62 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79979999889998799999999778588985699999
No 360
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.02 Score=37.25 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++|++||-|.|||+|.+.||--+.-.--+|.+.|
T Consensus 23 ~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~p~~G~I~~~G 60 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG 60 (235)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999963599999999749999965999999
No 361
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.43 E-value=0.012 Score=38.78 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244467359986056565027999999770882
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
.-+.+|.++.|.|.||.|||+||+.+.+.|.-.
T Consensus 2 ~~~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~ 34 (176)
T PRK05541 2 QMKPNGYVIWITGLAGSGKTTIAKALYERLKLK 34 (176)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 878886799978999998999999999999975
No 362
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.43 E-value=0.021 Score=36.99 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++|++||-|.||||+.|.|+--+....-+|.+.|.
T Consensus 24 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~sG~i~~~g~ 62 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG 62 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 799599999999999999999996677888529999999
No 363
>PRK13808 adenylate kinase; Provisional
Probab=95.42 E-value=0.023 Score=36.69 Aligned_cols=58 Identities=26% Similarity=0.443 Sum_probs=43.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 9986056565027999999770882499861888888883563200145671289999983278873
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np 435 (820)
|+|.||||.||.+.|+-|++-+|.+. ||.|.+--+ +|.. |.--|..++.++..|--=|
T Consensus 3 IIlLGPPGsGKGTQA~~L~~~~gi~h--ISTGDmLR~-aI~~------~T~LG~kaK~im~~G~LVP 60 (297)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ--LSTGDMLRA-AVAA------GTPVGLKAKDIMASGGLVP 60 (297)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE--ECHHHHHHH-HHHC------CCHHHHHHHHHHHCCCCCC
T ss_conf 99978999985899999999869886--758699999-9975------9987999999997669888
No 364
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.38 E-value=0.023 Score=36.80 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=27.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCC
Q ss_conf 5998605656502799999977088-249986188
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGR-QYVRMSLGG 401 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r-~f~~islgg 401 (820)
|++..|++|.|||++|+.+++.|+- .-..+|+-+
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98988999885999999999980999858997888
No 365
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=95.37 E-value=0.071 Score=33.03 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=30.0
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 984244467359986056565027999999770882
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
-.+.|=.+|+=+|++||||+|||+|...|++.....
T Consensus 7 D~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~~~ 42 (213)
T pfam00006 7 DLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKAD 42 (213)
T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 201664578887787899998899999999856618
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.35 E-value=0.021 Score=36.99 Aligned_cols=26 Identities=35% Similarity=0.677 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 673599860565650279999997708
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
+| +.+++||-|.|||+|.+.|+-.||
T Consensus 22 ~G-itaIvGpsGsGKSTLl~~i~~~lg 47 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98-289999999988999999998747
No 367
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.34 E-value=0.021 Score=37.04 Aligned_cols=38 Identities=29% Similarity=0.529 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++||+||-|.|||++.+.||--+.---=.|.++|
T Consensus 28 ~~Ge~~~llGpsG~GKTTllr~iaGl~~p~~G~I~~~g 65 (358)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG 65 (358)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999863699999999769998862999999
No 368
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.33 E-value=0.017 Score=37.66 Aligned_cols=54 Identities=30% Similarity=0.497 Sum_probs=38.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEE
Q ss_conf 467359986056565027999999770882499861888888883563200145671-28999998327887399993
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP-GRIIQSLKRAKRSNPLLLLD 440 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~p-g~ii~~l~~~~~~npv~~ld 440 (820)
..|.++||.|+=|-|||+++|.||++||-. ..++---+|.|-..+ | ..||.-+|
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~------------~~V~SPTFtlv~~Y~~~-----------~~~lyH~D 77 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGVD------------GNVKSPTFTLVEEYEEG-----------RLPLYHFD 77 (149)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC------------CCCCCCCEEEEHHHCCC-----------CCCEEEEE
T ss_conf 899889997787688599999999974999------------75249876101211379-----------98779986
No 369
>PRK13764 ATPase; Provisional
Probab=95.33 E-value=0.023 Score=36.75 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=33.8
Q ss_pred HHHHHHHCHHH-HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 77665201168-9999999999998424446735998605656502799999977088
Q gi|254780270|r 336 ILDQDHFGLEK-VKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR 392 (820)
Q Consensus 336 iLd~~hyGl~~-vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r 392 (820)
.|.-+.|.|.+ .|+|+.+ ... -++..||||-|||++|.++|+-+..
T Consensus 239 ~~sledY~l~~~l~~Rl~~---------~a~--GilIaG~PGaGKsTfaqalA~~~~~ 285 (605)
T PRK13764 239 KLSLEDYNLSEKLKERLEE---------RAE--GILIAGAPGAGKSTFAQALAEFYAD 285 (605)
T ss_pred ECCHHHCCCCHHHHHHHHH---------CCC--EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8047771678999998873---------366--4999779999778999999999984
No 370
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.33 E-value=0.024 Score=36.64 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=27.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCC
Q ss_conf 599860565650279999997708---8249986188
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGG 401 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~---r~f~~islgg 401 (820)
|++..||.|-|||++|+.|++.|+ ...+.||+-+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~ 37 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9899898977899999999999846488539995466
No 371
>KOG2485 consensus
Probab=95.31 E-value=0.084 Score=32.46 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=54.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHH--HHHHHHHCCCCCEEEEEEC
Q ss_conf 46735998605656502799999977088249986188888888356320014567128--9999983278873999933
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGR--IIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~--ii~~l~~~~~~npv~~lde 441 (820)
...+-..++|-|+|||.||--++..+..|++-.++ +|+.||- =|+...+.-..+||.++|-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~-----------------vG~~pGVT~~V~~~iri~~rp~vy~iDT 203 (335)
T KOG2485 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAAR-----------------VGAEPGVTRRVSERIRISHRPPVYLIDT 203 (335)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE-----------------CCCCCCCEEEEHHHEEECCCCCEEEECC
T ss_conf 87026999738988808899999988765300001-----------------0688885223121257436896588668
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 155423117711556
Q gi|254780270|r 442 IDKMGSDLRGDPSAA 456 (820)
Q Consensus 442 idk~~~~~~gdp~~a 456 (820)
-.=+..+..+.-..+
T Consensus 204 PGil~P~I~~~e~~l 218 (335)
T KOG2485 204 PGILVPSIVDVEDGL 218 (335)
T ss_pred CCCCCCCCCCHHHHH
T ss_conf 875798877977754
No 372
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.30 E-value=0.03 Score=35.90 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHCHHHHHHHHHHHHHHHHHC----CCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 201168999999999999842----44467359986056565027999999
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRV----IKNKGLILCFVGPPGVGKTSLAQSIA 387 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~----~~~~g~il~l~gppgvGKts~~~sia 387 (820)
.+|..+.++.+.+........ ....+--++++|-|.|||.||--++.
T Consensus 86 ~~g~~~l~~~i~~~~~~~~~~~~~~~~~~~~~v~ivG~PNVGKSSlIN~L~ 136 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLR 136 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 657899999999973544445551567777179997379876179999974
No 373
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.28 E-value=0.021 Score=37.11 Aligned_cols=72 Identities=15% Similarity=0.346 Sum_probs=40.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf 9986056565027999999770882---4998618888888835632001456712899999832788739999331
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI 442 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei 442 (820)
+.|+|.||.|||++|+.+++.|..+ -+-++-..+++.... -.-.|....-|.+..+..++-..+-++++|-.
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d~~~~~~~~--~~~~~Ek~~r~~~~~~v~~~l~~~~~vI~D~~ 76 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTDLIRESFPV--WKEKYEEFIRDSTLYLIKTALKNKYSVIVDDT 76 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHH--CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 7896789998999999999999982996599655200212000--33677999899999999998433766997273
No 374
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.28 E-value=0.021 Score=37.00 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=28.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++|++||-|.|||||.+.|+--+.-.-=+|.+.|
T Consensus 25 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g 62 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG 62 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79989999999998599999999768888873799999
No 375
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.25 E-value=0.028 Score=36.06 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||++.+.++--+.-.--.|.+.|
T Consensus 26 ~~Ge~~~iiG~nGaGKSTLl~~l~gl~~p~~G~i~i~g 63 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 79989999999997199999999658888860899999
No 376
>PRK07004 replicative DNA helicase; Provisional
Probab=95.25 E-value=0.28 Score=28.56 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCC
Q ss_conf 24446735998605656502799999977----088249986188
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA----TGRQYVRMSLGG 401 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~a----l~r~f~~islgg 401 (820)
.+=.+|..+-+.|-||+|||++|-.||.. -|.+-..+||==
T Consensus 208 ~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~~g~~V~~FSLEM 252 (460)
T PRK07004 208 SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEM 252 (460)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 389877579997368764269999999999872588669984779
No 377
>PRK06762 hypothetical protein; Provisional
Probab=95.24 E-value=0.11 Score=31.67 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=62.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHH
Q ss_conf 73599860565650279999997708824998618888888835632001456712899999832788739999331554
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKM 445 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~ 445 (820)
...+++-|.-|-||||+|+.+-+.+||...-||=--+|- .-+|-|... =++-++-|-+..+-+.-..+.+++.-| +
T Consensus 2 t~LIiiRGNSgSGKtT~Ak~L~~~~G~g~lLvsQD~vRR-~mLr~kD~~-g~~~i~Li~~~~~yg~~~~~~VIlEGI--L 77 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR-DMLRVKDGP-GNLSIDLIEQLVRYGLQHCEFVILEGI--L 77 (166)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHH-HHHHCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEE--C
T ss_conf 528999788888878999999998688857853758999-984055779-997868999999999856998999741--0
Q ss_pred HHHCCCCHHHHHHHHCCCC-CCCCEEEEECCCCCC
Q ss_conf 2311771155665540600-168133201035236
Q gi|254780270|r 446 GSDLRGDPSAALLEVLDPA-QNSSFVDHYLEVEYD 479 (820)
Q Consensus 446 ~~~~~gdp~~allevldp~-qn~~f~d~y~~~~~d 479 (820)
+++. +..||+-|=.. ++..| -.|||+||+
T Consensus 78 ~a~~----Yg~ml~~l~~~~~~~~~-~YY~Di~Fe 107 (166)
T PRK06762 78 NSDR----YGPMLKELIHLFGGNAY-TYYFDLSFE 107 (166)
T ss_pred CHHH----HHHHHHHHHHHCCCCEE-EEEEECCHH
T ss_conf 0448----99999999986578669-999948779
No 378
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.024 Score=36.65 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++||+||-|.|||++.+.||--..----.|.++|
T Consensus 30 ~~Ge~~~llGpSG~GKTTlLr~iaGl~~p~~G~I~~~g 67 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDG 67 (351)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999964999999999769998836999999
No 379
>PRK01184 hypothetical protein; Provisional
Probab=95.22 E-value=0.022 Score=36.83 Aligned_cols=41 Identities=34% Similarity=0.635 Sum_probs=28.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC-CCHHHHCC
Q ss_conf 359986056565027999999770882499861888-88888356
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV-YDEADIRG 410 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~~islgg~-~d~~~i~g 410 (820)
.|+||+|+||.||++++. |++.+|-+. +++|-+ +.+..=+|
T Consensus 2 ~iIGlTG~iGSGKstva~-i~~e~G~~v--i~~~Divr~~v~~~g 43 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSK-IARELGIPV--VVMGDVIREEVKKRG 43 (183)
T ss_pred EEEEEECCCCCCHHHHHH-HHHHCCCEE--EECCHHHHHHHHHCC
T ss_conf 399996899887899999-999779939--986077899999838
No 380
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.22 E-value=0.016 Score=37.95 Aligned_cols=43 Identities=33% Similarity=0.550 Sum_probs=34.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 998605656502799999977088249986188888888356320014567128999998327887
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN 434 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n 434 (820)
+-|-||||.||=+.|+-||+-+|.+. ||=|- |.++-++++|..
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~H--ISTGD---------------------llR~~~~~~T~L 44 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPH--ISTGD---------------------LLRAAVKAGTPL 44 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC--CCCHH---------------------HHHHHHHHCCHH
T ss_conf 46755989876679999998608850--20258---------------------999998707977
No 381
>pfam01202 SKI Shikimate kinase.
Probab=95.22 E-value=0.014 Score=38.43 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 65650279999997708824998
Q gi|254780270|r 375 PGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 375 pgvGKts~~~sia~al~r~f~~i 397 (820)
+|+|||++|+.+|+.||++|+-.
T Consensus 1 mGsGKstigk~LA~~L~~~fiD~ 23 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPFIDT 23 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 98977999999999969997887
No 382
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.025 Score=36.40 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++||+||-|.|||++.+.||--+.---=.|.++|.
T Consensus 27 ~~Ge~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~ 65 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEK 65 (369)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 799899999999736999999997799999549999999
No 383
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.16 E-value=0.039 Score=34.96 Aligned_cols=47 Identities=28% Similarity=0.277 Sum_probs=34.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHH----HHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 446735998605656502799999----9770882499861888888883563
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSI----AKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~si----a~al~r~f~~islgg~~d~~~i~gh 411 (820)
=.+|....+.|+||+|||++|-.. |+..|.+...|+|.=- ..++..|
T Consensus 21 lp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~--~~~l~~~ 71 (501)
T PRK09302 21 LPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEES--PEDIIRN 71 (501)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHH
T ss_conf 88997799983899999999999999998855997899985799--9999999
No 384
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.14 E-value=0.2 Score=29.60 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=50.4
Q ss_pred CEEEEECCCCCCHHHH-HHHHHHHHCCC----EEEEE--------------------------CCCCCCH----HHHCCC
Q ss_conf 3599860565650279-99999770882----49986--------------------------1888888----883563
Q gi|254780270|r 367 LILCFVGPPGVGKTSL-AQSIAKATGRQ----YVRMS--------------------------LGGVYDE----ADIRGH 411 (820)
Q Consensus 367 ~il~l~gppgvGKts~-~~sia~al~r~----f~~is--------------------------lgg~~d~----~~i~gh 411 (820)
..+.+.+|+|.|||.. ...+...+.+. ..-++ .-|-.+. ..+...
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESG 104 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCC
T ss_conf 98899899996099999999999863389975999908599999999886010210204455652477379999999759
Q ss_pred CCCCCCCCCHHHHHHHHHC--CCCCE-EEEEECHHHHHHHCCCCHHHHHHHHC
Q ss_conf 2001456712899999832--78873-99993315542311771155665540
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRA--KRSNP-LLLLDEIDKMGSDLRGDPSAALLEVL 461 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~--~~~np-v~~ldeidk~~~~~~gdp~~allevl 461 (820)
+.--+=+.|+++.+.+.+. ...+. ++++||.+.+....++.-...++..+
T Consensus 105 ~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 105 KTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred CCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHHHHHC
T ss_conf 99899955899999997275452543199998967751257099999999967
No 385
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.14 E-value=0.023 Score=36.70 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+|++||-|.|||++.|.|+-.+.-.-=+|.+.|
T Consensus 32 ~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p~~G~I~~~G 69 (269)
T PRK11831 32 PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG 69 (269)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79989999939997599999999679888986699999
No 386
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.03 Score=35.87 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+++++||-|.|||+|.+.|+-.+.-.--.|.+.|.
T Consensus 23 ~~GE~v~iiG~nGaGKSTLl~~i~Gll~p~sG~I~i~G~ 61 (233)
T PRK10771 23 ERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLLINGV 61 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899899999999981999999996599998559999999
No 387
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.10 E-value=0.1 Score=31.76 Aligned_cols=213 Identities=22% Similarity=0.363 Sum_probs=106.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH------HHCCCEEEEECCCCCC---HHHHCCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf 4673599860565650279999997------7088249986188888---888356320-01456712899999832788
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAK------ATGRQYVRMSLGGVYD---EADIRGHRR-TYIGSMPGRIIQSLKRAKRS 433 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~------al~r~f~~islgg~~d---~~~i~gh~~-ty~ga~pg~ii~~l~~~~~~ 433 (820)
++.||| |+||.|.||.-||+-|-+ .+.-+|+.+.+.-++- .+-+-||-+ .+.||.-.| .+|-++--
T Consensus 207 sr~p~l-l~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r--~gllrsad- 282 (531)
T COG4650 207 SRAPIL-LNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESR--EGLLRSAD- 282 (531)
T ss_pred CCCCEE-EECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHH--HHHHCCCC-
T ss_conf 469768-64688743668999999999888753786278863000475288998764001314633455--44243377-
Q ss_pred CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEE----EEECCCCCCCCCEEEEE-ECCCC-C-C-----CHHHCCC
Q ss_conf 7399993315542311771155665540600168133----20103523644279999-34865-5-4-----4131172
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFV----DHYLEVEYDLSDVMFIM-TANTL-N-I-----PLPLMDR 501 (820)
Q Consensus 434 npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~----d~y~~~~~dls~v~fi~-tan~~-~-i-----~~~l~dr 501 (820)
....+||||..+|.+-+ +-||.-+. .+.|. |.-..-.|. .|+ |-.++ + . -.-|.-|
T Consensus 283 ggmlfldeigelgadeq----amllkaie---ekrf~pfgsdr~v~sdfq-----liagtvrdlrq~vaeg~fredl~ar 350 (531)
T COG4650 283 GGMLFLDEIGELGADEQ----AMLLKAIE---EKRFYPFGSDRQVSSDFQ-----LIAGTVRDLRQLVAEGKFREDLYAR 350 (531)
T ss_pred CCEEEHHHHHHCCCCHH----HHHHHHHH---HHCCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86575674332475278----89999988---712677887400031067-----7641188899998636137878876
Q ss_pred --EEEEEECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC-CCCHHHHHHHHH-HHHHHHHHHHH
Q ss_conf --47998258786-89998999860898998625781313228999999973177-410234788879-99989876542
Q gi|254780270|r 502 --MEIIRIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFT-HEAGVRSFERAL-MKIARKAVTKI 576 (820)
Q Consensus 502 --me~i~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt-~EaGvR~l~r~i-~~i~r~~~~~~ 576 (820)
+-..++||.-. .|-++---+|-+-+--.++ ..++.|.-++-......-| -+|--|.--|.+ +++.|-+.+
T Consensus 351 inlwtf~lpgl~qr~ediepnldyelerha~~~---g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatl-- 425 (531)
T COG4650 351 INLWTFTLPGLRQRQEDIEPNLDYELERHASLT---GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATL-- 425 (531)
T ss_pred HHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH---CCEEEEEHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHH--
T ss_conf 311354066311570006988347899988861---863552079888899750583011126688876899999887--
Q ss_pred HCCCCCEECCCHHHHHHHHCCCCCC
Q ss_conf 1178520127967867530520003
Q gi|254780270|r 577 VKNSDTTVSINENNLQDYLGVPRYK 601 (820)
Q Consensus 577 ~~~~~~~~~i~~~~l~~~lg~~~~~ 601 (820)
+ ..-.||.+.+++-++.-+|.
T Consensus 426 a----d~grit~~~ve~ei~rlr~~ 446 (531)
T COG4650 426 A----DSGRITLDVVEDEINRLRYN 446 (531)
T ss_pred H----CCCCEEHHHHHHHHHHHHHH
T ss_conf 1----27830088789999999987
No 388
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.08 E-value=0.018 Score=37.58 Aligned_cols=40 Identities=33% Similarity=0.639 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH---HHHCCCEEEEECCC-CC
Q ss_conf 467359986056565027999999---77088249986188-88
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIA---KATGRQYVRMSLGG-VY 403 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia---~al~r~f~~islgg-~~ 403 (820)
-+|-|.=++||||+|||.+|--.| ...|.+-+.|.==| ..
T Consensus 10 E~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS 53 (223)
T TIGR02237 10 ERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLS 53 (223)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 20358898758998678999999999986189589996289832
No 389
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.07 E-value=0.024 Score=36.62 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+++++||.|.|||||.+.|+.-+.-.--.|-++|.
T Consensus 25 ~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I~~~~~ 63 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNK 63 (218)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 699999999999980999999985556567764998986
No 390
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.05 E-value=0.12 Score=31.41 Aligned_cols=40 Identities=35% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH--H--HCCCEEEEECC
Q ss_conf 2444673599860565650279999997--7--08824998618
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK--A--TGRQYVRMSLG 400 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~--a--l~r~f~~islg 400 (820)
.+=.+|..+-+.|.||+|||++|-.||. | -|.+-..+||=
T Consensus 189 ~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLE 232 (421)
T TIGR03600 189 NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 69998868999854678745999999999998669838999257
No 391
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.04 E-value=0.04 Score=34.94 Aligned_cols=44 Identities=25% Similarity=0.473 Sum_probs=31.7
Q ss_pred HHHHHHH----HHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9999999----9999984244-467359986056565027999999770
Q gi|254780270|r 347 VKERIIE----YLAVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 347 vK~rile----~lav~~~~~~-~~g~il~l~gppgvGKts~~~sia~al 390 (820)
-|+.|++ .+||...+=+ .+|.|+|++||-|.|||++.+.|+.-.
T Consensus 26 ~k~~i~~~tg~~vAV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~GL~ 74 (382)
T TIGR03415 26 TREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred CHHHHHHHHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899988339999896517488799899999999734999999997599
No 392
>PRK05480 uridine kinase; Provisional
Probab=95.03 E-value=0.033 Score=35.53 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEECCC
Q ss_conf 467359986056565027999999770882-49986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ-YVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~-f~~islgg 401 (820)
.++-|+++.|++|.|||++|+.|++.|+.. ..-||+-+
T Consensus 4 k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~ 42 (209)
T PRK05480 4 KQPIIIGIAGGSGSGKTTVASTIYEELGDESIAVISQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 898899998999778999999999980868759995544
No 393
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.03 E-value=0.029 Score=35.95 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++|++||-|.|||+|.+.|+.-+.-.--+|.+.|
T Consensus 31 ~~Ge~~~i~G~sGsGKSTLlk~i~gl~~p~~G~I~~~g 68 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 59969999999999999999999646688876599999
No 394
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.023 Score=36.69 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|..+|++||.|-|||||.+.|..-+.-.--+|.++|.
T Consensus 25 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~ 63 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ 63 (236)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCE
T ss_conf 699999999999998999999974385488748999999
No 395
>PRK13768 GTPase; Provisional
Probab=95.02 E-value=0.038 Score=35.05 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=29.9
Q ss_pred CEEEEECCCCCCHHHHHHHHH---HHHCCCEEEEECCCCCC
Q ss_conf 359986056565027999999---77088249986188888
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIA---KATGRQYVRMSLGGVYD 404 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia---~al~r~f~~islgg~~d 404 (820)
.++..+||||-|||+.++++. +++||+..-|.|---.+
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e 43 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVE 43 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 18999899999889999999999997699759997898665
No 396
>PRK08082 consensus
Probab=95.02 E-value=0.32 Score=28.11 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=30.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH--HH--CCCEEEEECCC
Q ss_conf 444673599860565650279999997--70--88249986188
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAK--AT--GRQYVRMSLGG 401 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~--al--~r~f~~islgg 401 (820)
+=.+|..+.+.|-||+|||++|-.||. |+ |.+-..+||==
T Consensus 199 G~~~g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM 242 (453)
T PRK08082 199 GFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEM 242 (453)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 77758579998678875789999999999985599489973138
No 397
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.01 E-value=0.043 Score=34.67 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH--H--HCCCEEEEECC
Q ss_conf 2444673599860565650279999997--7--08824998618
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK--A--TGRQYVRMSLG 400 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~--a--l~r~f~~islg 400 (820)
.+=.+|...++.|+||+|||+++..+|. | -|.+...+||-
T Consensus 8 gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlE 51 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 69999818999968999999999999999999779959999333
No 398
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.01 E-value=0.027 Score=36.22 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+|++||-|.|||++.+.|+-.+.-.--+|.+.|
T Consensus 30 ~~GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G~I~~~g 67 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79979999888998899999998567888887399746
No 399
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.032 Score=35.66 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 446735998605656502799999977088249986188
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
+.+|.++|++||-|.|||++.+.||--+.-.--+|.++|
T Consensus 20 ~i~ge~~~iiGpSGsGKSTll~~i~GL~~p~sG~I~~~G 58 (214)
T cd03297 20 DLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNG 58 (214)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 629979999999973599999999849999964999999
No 400
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=94.99 E-value=0.089 Score=32.26 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=34.3
Q ss_pred HHHHHHHHH--HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 999999998--424446735998605656502799999977088249
Q gi|254780270|r 351 IIEYLAVQM--RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 351 ile~lav~~--~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
++.||...+ |++..|-..|+++|||-+||...+-|.-+-|+-+..
T Consensus 245 fi~Fl~alk~fLkg~PKknCivi~GPPnTGKS~F~mSLi~fL~G~Vi 291 (432)
T pfam00519 245 FISFLSALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLGGKVI 291 (432)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 99999999999648985246999899996676899999998498699
No 401
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.99 E-value=0.033 Score=35.54 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCC
Q ss_conf 467359986056565027999999770882--49986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ--YVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~--f~~islgg 401 (820)
.+|.++||+||-|.|||++-+.||--+.-. --+|.++|
T Consensus 29 ~~GE~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g 68 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD 68 (362)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 9998999999997459999999977767778817999999
No 402
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.99 E-value=0.031 Score=35.80 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=27.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+|++||-|-|||+|.+.|+--..-.--.|.++|
T Consensus 29 ~~Gei~~iiG~sGsGKSTLl~~i~gl~~p~~G~I~~~g 66 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG 66 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79979999989998199999999659999981899999
No 403
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.98 E-value=0.019 Score=37.41 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 4467359986056565027999999770882
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
=..|.|.-++||||+|||.+|-.+|-+..+|
T Consensus 16 i~~G~itEi~G~~GsGKTql~lqla~~~~~~ 46 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLP 46 (235)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 6478799999999984999999999998424
No 404
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.97 E-value=0.044 Score=34.61 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 467359986056565027999999
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIA 387 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia 387 (820)
.+|.+.+++||-|.|||||.+.+-
T Consensus 19 ~~Ge~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899899999999998999999888
No 405
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.97 E-value=0.033 Score=35.53 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=20.8
Q ss_pred EEECCCCCCHHHHHHHHH-HHH--CCCEEEEEC
Q ss_conf 986056565027999999-770--882499861
Q gi|254780270|r 370 CFVGPPGVGKTSLAQSIA-KAT--GRQYVRMSL 399 (820)
Q Consensus 370 ~l~gppgvGKts~~~sia-~al--~r~f~~isl 399 (820)
++.||||+|||++|..++ +++ |-+...+|+
T Consensus 3 Li~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~ 35 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 587689999999999999999876997899995
No 406
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=94.96 E-value=0.021 Score=37.10 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 5998605656502799999977088249
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
|++..||.|.|||++|+.|++.|+..-+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~ 28 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGV 28 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9899899857199999999999660587
No 407
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.96 E-value=0.031 Score=35.75 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++|++||-|.|||++.|.|+..+.-.--.|.++|-
T Consensus 26 ~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~sG~I~i~g~ 64 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64 (255)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 899799999999981999999997598888648999999
No 408
>PRK08006 replicative DNA helicase; Provisional
Probab=94.95 E-value=0.33 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH--H--HCCCEEEEECCC
Q ss_conf 2444673599860565650279999997--7--088249986188
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK--A--TGRQYVRMSLGG 401 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~--a--l~r~f~~islgg 401 (820)
.+=.+|..+-+.|-||+|||++|-.||. | -|.+-..+||==
T Consensus 219 ~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fSlEM 263 (471)
T PRK08006 219 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM 263 (471)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 688217389999469987699999999999986699579981679
No 409
>PRK04132 replication factor C small subunit; Provisional
Probab=94.94 E-value=0.12 Score=31.40 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=7.4
Q ss_pred CCCCEEEECCCCCE
Q ss_conf 50000000001680
Q gi|254780270|r 612 GIVTGLAWTEVGGE 625 (820)
Q Consensus 612 G~v~GLa~t~~GG~ 625 (820)
-.+|-|-.|++++.
T Consensus 742 kAIN~LQsaa~~~~ 755 (863)
T PRK04132 742 RAINVLQAAAALDT 755 (863)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999986169
No 410
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=94.94 E-value=0.028 Score=36.05 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+||+||-|.|||++.+.|+-.+...--+|.+.|
T Consensus 27 ~~Gei~~liGpNGaGKSTLl~~i~Gl~~~~~G~I~i~g 64 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD 64 (241)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 39979999889998699999999678888876277634
No 411
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.93 E-value=0.022 Score=36.82 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 4673599860565650279999997708
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
.+|.|+||+||-|.|||||.|.|+--+.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6994999989999989999999958878
No 412
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.92 E-value=0.026 Score=36.32 Aligned_cols=69 Identities=26% Similarity=0.364 Sum_probs=42.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCC---CCCHHHHH--HHHHCCCCCE-EE
Q ss_conf 467359986056565027999999770882499861888888883563200145---67128999--9983278873-99
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG---SMPGRIIQ--SLKRAKRSNP-LL 437 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~g---a~pg~ii~--~l~~~~~~np-v~ 437 (820)
.+|.|++++||-|.|||++.|.|+-.+.----.+.+-| ++-.|.- .+-|---| ++.++=..|| ++
T Consensus 23 ~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g---------~~~~~~pq~~~LSGGqrQRv~iAral~~~p~ll 93 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG---------ITPVYKPQYIDLSGGELQRVAIAAALLRNATFY 93 (177)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECC---------CCEECCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 89989999899999999999999688678899466668---------612215551507989999999999982399999
Q ss_pred EEEC
Q ss_conf 9933
Q gi|254780270|r 438 LLDE 441 (820)
Q Consensus 438 ~lde 441 (820)
+|||
T Consensus 94 lLDE 97 (177)
T cd03222 94 LFDE 97 (177)
T ss_pred EECC
T ss_conf 9748
No 413
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.91 E-value=0.036 Score=35.25 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+||+||-|.|||++.+.|+-.+...-=.|.+.|
T Consensus 24 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~G 61 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61 (222)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999998599999999779889960999999
No 414
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.90 E-value=0.029 Score=35.94 Aligned_cols=39 Identities=26% Similarity=0.515 Sum_probs=29.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+++++||-|-|||+|.+.|+-.+.-.--+|.+||+
T Consensus 25 ~~Ge~~aliG~sGsGKSTLl~~l~gl~~p~~G~i~~~~~ 63 (248)
T PRK11264 25 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI 63 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 799899999999980999999997589999867999999
No 415
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.037 Score=35.21 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++|++||-|.|||++.+.||.-+.----.|-+.|
T Consensus 25 ~~Ge~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~i~g 62 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62 (242)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 69989999999995699999999759999815999999
No 416
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=94.89 E-value=0.039 Score=34.96 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=29.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 652011689999999999998424446735998605656502799999
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSI 386 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~si 386 (820)
+++.|.+..++.|.++. ....+..-++++|-|+|||.||--++
T Consensus 79 ~~~~g~~~L~~~i~~~~-----~~~~~~~~v~ivG~PNVGKSTLIN~L 121 (156)
T cd01859 79 KERLGTKILRRTIKELA-----KIDGKEGKVGVVGYPNVGKSSIINAL 121 (156)
T ss_pred CCCCCHHHHHHHHHHHH-----CCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 26757999999999860-----23566628999814784598999997
No 417
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.87 E-value=0.034 Score=35.48 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++|++||-|.||||+.|.|+.-+.-.--+|.+.|
T Consensus 31 ~~Ge~~~iiGpNGaGKSTLlk~i~Gll~p~~G~I~l~g 68 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDG 68 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 59979999999883999999999749888852999999
No 418
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.85 E-value=0.034 Score=35.41 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.++|++||-|.|||+|.+.|+..+...--.|.++|
T Consensus 35 ~~Ge~~~liG~NGaGKSTLl~~l~gl~~p~~G~I~~~g 72 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79989999999998099999999568899873899997
No 419
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.039 Score=35.00 Aligned_cols=38 Identities=37% Similarity=0.393 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|.|++||-|.|||++.+.||--+.-.--+|.++|
T Consensus 22 ~~g~i~~l~GpsGaGKTTLl~~iaGl~~p~~G~I~~~g 59 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINLISGLTRPQKGRIVLNG 59 (352)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999996299999999768999965999999
No 420
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.82 E-value=0.031 Score=35.74 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||++++.|+--+.-.--+|.+.|
T Consensus 26 ~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~I~v~G 63 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63 (274)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 48999999999998099999999706858887299999
No 421
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.81 E-value=0.039 Score=34.99 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+|+.||-|.|||++.+.|+--+.-.-=+|.+.|
T Consensus 24 ~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~~G~I~~~G 61 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61 (230)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 99979999999994099999999779999954999999
No 422
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.80 E-value=0.047 Score=34.37 Aligned_cols=53 Identities=34% Similarity=0.510 Sum_probs=34.8
Q ss_pred CCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 735-9986056565027999999770882499861888888883563200145671289999983278873999933
Q gi|254780270|r 366 GLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 366 g~i-l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
.+| ++.||-|-|||.|+--++ +|-+++=+|+.||.- ..+......+-+.|+|-
T Consensus 117 ~~i~v~vVG~PNVGKSSlIN~L----------------------~~~k~~~v~~~PG~T-r~~q~i~l~~~i~llDt 170 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRL----------------------AGKKVAKVGNRPGVT-KGQQWIKLSDGLELLDT 170 (276)
T ss_pred CCEEEEEECCCCCCHHHHHHHH----------------------HCCCEEEECCCCCCC-CEEEEEEECCCEEEECC
T ss_conf 8638999727987589999987----------------------367258777965421-02589995797799668
No 423
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=94.79 E-value=0.035 Score=35.36 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++|+-|.|||+|++.|+.-+.-.--.|.+.|
T Consensus 36 ~~GE~l~ivGeSGsGKSTL~r~i~gl~~p~sG~I~~~g 73 (266)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLESPSQGNISWRG 73 (266)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999997799999999669999962998899
No 424
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.79 E-value=0.019 Score=37.28 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|..+|++||-|.|||||.+.|..-+.-.--.|.++|+
T Consensus 28 ~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 66 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGT 66 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 799999999999985999999996725478658999999
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=94.79 E-value=0.36 Score=27.67 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=60.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC-CCEEEEEECH
Q ss_conf 673599860565650279999997708-82499861888888883563200145671289999983278-8739999331
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATG-RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR-SNPLLLLDEI 442 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~-r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~-~npv~~ldei 442 (820)
+..+++|||.-|+|||+-+--+|.-+. +..-++-|... | ||- ||-+=|--.-+.. .-||+
T Consensus 99 ~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaa-D---------t~R---paA~eQL~~la~~~~v~~~----- 160 (453)
T PRK10867 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA-D---------VYR---PAAIKQLETLAEQVGVDFF----- 160 (453)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-C---------CCH---HHHHHHHHHHHHHCCCCEE-----
T ss_conf 996999974688851858999999999738983798558-8---------770---5899999999985198043-----
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCE
Q ss_conf 554231177115566554060016813320103523644279999348655441311724
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRM 502 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drm 502 (820)
+.....||++.--.-+.-...+. .+|+.|=||--+++...|.+-|
T Consensus 161 ---~~~~~~dp~~ia~~a~~~ak~~~------------~DvvivDTAGRl~~d~~Lm~El 205 (453)
T PRK10867 161 ---PSDVGQKPVDIVNAALKEAKLKF------------YDVLLVDTAGRLHVDEAMMDEI 205 (453)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHCC------------CCEEEEECCCCHHCCHHHHHHH
T ss_conf ---67889988999999999999779------------9999997876012108889999
No 426
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.78 E-value=0.047 Score=34.39 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-H--CCCEEEEECCC
Q ss_conf 446735998605656502799999977-0--88249986188
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKA-T--GRQYVRMSLGG 401 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~a-l--~r~f~~islgg 401 (820)
=.+|..++++|+||+|||+++.-.+.. + |.|...||+--
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 889978999938998689999999997762698589999206
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.77 E-value=0.037 Score=35.14 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHH-HHHHHHHHH----CCCEEEEECCCCC
Q ss_conf 67359986056565027-999999770----8824998618888
Q gi|254780270|r 365 KGLILCFVGPPGVGKTS-LAQSIAKAT----GRQYVRMSLGGVY 403 (820)
Q Consensus 365 ~g~il~l~gppgvGKts-~~~sia~al----~r~f~~islgg~~ 403 (820)
++.++.||||-|||||+ |||==|+.. .++---|++---|
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 68579998998875887999999999753257606899714411
No 428
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.77 E-value=0.025 Score=36.47 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 467359986056565027999999770
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al 390 (820)
.+|.+++++||.|.|||++.+.|+-.+
T Consensus 31 ~~Ge~~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 188099999899960999999996789
No 429
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.76 E-value=0.034 Score=35.44 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.|++++||-|.|||++.+.|+-.+.-.--+|.+.|.
T Consensus 26 ~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~~G~I~~~g~ 64 (257)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELPPSSGEVRLFGR 64 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECE
T ss_conf 699899999999987999999985675778756999365
No 430
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.74 E-value=0.042 Score=34.74 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++|++||-|.|||++.+.||--..-.--.|.++|.
T Consensus 24 ~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~ 62 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR 62 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 699899999999880999999997699998639999999
No 431
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.74 E-value=0.37 Score=27.58 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCH---
Q ss_conf 35898999998743247999999999999865566677775433332223321122101111000010124665504---
Q gi|254780270|r 190 LSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRD--- 266 (820)
Q Consensus 190 L~l~~eeKQeLLE~~Di~eRLe~Ll~lL~~EiEilkLq~eI~~kVk~kidk~QREyyLREQLKaIqkELGe~ed~~~--- 266 (820)
..++..+-+++-...+..-|.+-+ +++...++.+.+...+.+...+.-|.-|.- +...|-+||-.++...
T Consensus 113 ~g~s~rea~~~a~~ve~~lr~~g~-----~~i~~~~l~~~~~~~l~~~~g~~~r~~y~~--~~~~~g~l~v~~~~g~~r~ 185 (492)
T PRK12337 113 AGLSLREAYELASAVDLRLRQEGL-----REIPVKRLDKVVEETLARLYGEHLRLTYRA--LQLNRGKLGVESAEGGPPV 185 (492)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCHHEEECCCCCCCC
T ss_conf 598889999999999999998265-----047876789999999999867899999999--9983411125437899999
Q ss_pred HHH--HHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHH
Q ss_conf 678--9998522247885788888999999-98753110257899999876540415876632210688-9987766520
Q gi|254780270|r 267 EIS--DFEARISKIRLSKEAREKALSELQK-LRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDF-AIRILDQDHF 342 (820)
Q Consensus 267 Ei~--el~~Ki~~~~lp~e~~~~~~kEl~r-L~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~-a~~iLd~~hy 342 (820)
-.. =|-.-|-.+++.++..-.+-+|+.+ |..- +++.-.+-+|-+ +...|.+ .+
T Consensus 186 PFSkGiLarSltaaG~~P~~Ay~iA~eie~~L~~~----------------------~~~~i~~~elr~~v~~~L~~-~~ 242 (492)
T PRK12337 186 PFSKGLLVQSLLAAGVAPDVARKVARVTQRDLRGS----------------------GDRVVRRDEIREKVEALLRD-EV 242 (492)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC----------------------CCEEEEHHHHHHHHHHHHHH-HC
T ss_conf 85064799999980588889999999999999865----------------------88797099999999999987-30
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 11689999999999998424446735998605656502799999977088249
Q gi|254780270|r 343 GLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV 395 (820)
Q Consensus 343 Gl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~ 395 (820)
|-+ +-+| |+--+.+....+.-||++-|.+||||.++|-.+|.-||.+-+
T Consensus 243 ~~~-~A~r---Y~lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA~RLGI~~V 291 (492)
T PRK12337 243 GPD-VSAR---YRLLRVLRKPPRPLHVLLGGVSGTGKSVLAAELAYRLGITRV 291 (492)
T ss_pred CHH-HHHH---HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 388-9999---999999735688769996078886688899999996098810
No 432
>PRK05748 replicative DNA helicase; Provisional
Probab=94.73 E-value=0.37 Score=27.57 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH--H--HCCCEEEEECCC
Q ss_conf 2444673599860565650279999997--7--088249986188
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK--A--TGRQYVRMSLGG 401 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~--a--l~r~f~~islgg 401 (820)
.+=.+|..+.+.|.||+|||++|-.||. | -|.+...+||==
T Consensus 198 ~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM 242 (448)
T PRK05748 198 SGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM 242 (448)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 798867379998479987689999999999985698089981778
No 433
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.73 E-value=0.039 Score=34.99 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4673599860565650279999997
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAK 388 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~ 388 (820)
.+|.|+|++||-|.|||||.+.|+-
T Consensus 25 ~~Gei~~iiG~nGaGKSTLl~~i~G 49 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4997999999999999999999837
No 434
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.73 E-value=0.043 Score=34.71 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=27.7
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 424446735998605656502799999977088
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR 392 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r 392 (820)
-....+|.++-|.|.||.|||+||+.+.+.|..
T Consensus 18 ~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~ 50 (198)
T PRK03846 18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 986899869998799999889999999999997
No 435
>KOG3079 consensus
Probab=94.73 E-value=0.052 Score=34.05 Aligned_cols=66 Identities=27% Similarity=0.504 Sum_probs=54.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEE
Q ss_conf 44673599860565650279999997708824998618888888835632001456712899999832788739
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPL 436 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv 436 (820)
..+.||+-..|+||-||-+++.-|++-.| |+-+|.|-+= -+|+.- .|+.-|..|+.+++.|-.-|+
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLL-R~E~~~-----~gse~g~~I~~~i~~G~iVP~ 70 (195)
T KOG3079 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLL-RAEIAS-----AGSERGALIKEIIKNGDLVPV 70 (195)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC--CEEECHHHHH-HHHHCC-----CCCHHHHHHHHHHHCCCCCCH
T ss_conf 45798899976898882269999999769--5463287999-998805-----467678999999986996748
No 436
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.72 E-value=0.039 Score=34.96 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+.+++||-|.||||+.|.|+--+.---=.|.+.|
T Consensus 23 ~~Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i~i~g 60 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 59989999999998699999999768788975899999
No 437
>PRK09165 replicative DNA helicase; Provisional
Probab=94.72 E-value=0.38 Score=27.55 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.2
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2444673599860565650279999997
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK 388 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~ 388 (820)
.+=.+|..+-+.|-||+|||++|-.||.
T Consensus 200 ~G~~~GdLiIIAARPsmGKTafaLniA~ 227 (484)
T PRK09165 200 GGLHPSDLIILAGRPSMGKTALATNIAF 227 (484)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 5888773799960799977899999999
No 438
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.05 Score=34.19 Aligned_cols=26 Identities=38% Similarity=0.859 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 67359986056565027999999770
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al 390 (820)
+|.++||.||-||||+||.+.+-+.-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 86399998998888899999998634
No 439
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.72 E-value=0.034 Score=35.46 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|++++|+-|.|||++++.|+..+.-.--+|.+.|
T Consensus 348 ~~GE~l~lvG~sGsGKSTl~r~l~gl~~~~~G~I~~~G 385 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385 (623)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 89958999767876689999998566466786799999
No 440
>PRK13542 consensus
Probab=94.71 E-value=0.044 Score=34.60 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++|++||=|.|||++.|.|+-.+..---.|.+.|.
T Consensus 42 ~~Gei~~liGpNGaGKTTLlk~l~Gll~p~~G~I~~~G~ 80 (224)
T PRK13542 42 APGDLLQVMGPNGSGKTSLLRVLSGLMPPAEGDLYWRGR 80 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 599799999999999999999995797888528999999
No 441
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.033 Score=35.56 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=34.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 46735998605656502799999977088249986188888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD 404 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d 404 (820)
.+|.++|++||-|.|||++.+.|+-.+.-..-.|.++|+..
T Consensus 50 ~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p~~G~I~i~~~~~ 90 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYI 90 (320)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
T ss_conf 59989999949998499999999758889983599865871
No 442
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.69 E-value=0.04 Score=34.93 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=26.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||++-+.|+--..----.|.+.|
T Consensus 22 ~~Ge~~~i~GpSGsGKSTLL~~i~gl~~p~sG~i~~~g 59 (206)
T TIGR03608 22 EKGKMVAIVGESGSGKSTLLNIIGLLEKPDSGQVYLNG 59 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 69989999879997099999999759998975999999
No 443
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.69 E-value=0.075 Score=32.85 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=31.7
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHH----HHHCCCEEEEECCC
Q ss_conf 4244467359986056565027999999----77088249986188
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIA----KATGRQYVRMSLGG 401 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia----~al~r~f~~islgg 401 (820)
+.+=.+|...++.|+||+|||+++..+| ..-|.+...+||==
T Consensus 24 ~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm 69 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 3799998089999689986999999999999997699089997049
No 444
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.68 E-value=0.037 Score=35.20 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4673599860565650279999997
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAK 388 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~ 388 (820)
.+|.|+|++||-|.|||+|.+.|+-
T Consensus 30 ~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 30 NAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 7998999999999999999999727
No 445
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.67 E-value=0.041 Score=34.85 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 67359986056565027999999770882499861888
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
+|..+++|||-|.|||||.+-+..-..-.--.|.++|.
T Consensus 340 ~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~idg~ 377 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI 377 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECE
T ss_conf 99789987999998799999999776426787465010
No 446
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=94.67 E-value=0.26 Score=28.75 Aligned_cols=260 Identities=17% Similarity=0.210 Sum_probs=119.0
Q ss_pred HHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCC------CE----
Q ss_conf 06889-9877665201168999999999999842444673599860565650279999997---7088------24----
Q gi|254780270|r 329 NLDFA-IRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK---ATGR------QY---- 394 (820)
Q Consensus 329 dl~~a-~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~---al~r------~f---- 394 (820)
||+.+ -++=++.|.+|+.--...|. ....-.|..|.|-||+|||++-|.|++ .++= .+
T Consensus 335 ~~Q~hi~eve~~~~~~l~~~Qk~AL~--------~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd 406 (769)
T TIGR01448 335 DLQKHILEVEKKLRLKLSEEQKEALK--------TAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDD 406 (769)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH--------HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999998687506770688999999--------9860948998577888616899999999987168775531245677
Q ss_pred EEEECCCCCCH-----HHHCCCCCCC----CCCCCHHHHHH-HHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 99861888888-----8835632001----45671289999-98327887399993315542311771155665540600
Q gi|254780270|r 395 VRMSLGGVYDE-----ADIRGHRRTY----IGSMPGRIIQS-LKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPA 464 (820)
Q Consensus 395 ~~islgg~~d~-----~~i~gh~~ty----~ga~pg~ii~~-l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~ 464 (820)
..|-|.-=+=- +|+.|.+=.= .|--+--.... .-.-.-..-+++.||.-=|.. +|+.
T Consensus 407 ~~v~LaAPTGrAAkRl~E~TG~~a~TIHRLlG~~~~~~~~~k~~~~~~~~DL~IvDE~SM~Dt--------~L~~----- 473 (769)
T TIGR01448 407 LPVVLAAPTGRAAKRLAEVTGLEALTIHRLLGYGSDTKSENKNLEDPIDADLLIVDESSMVDT--------WLAS----- 473 (769)
T ss_pred CEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHH--------HHHH-----
T ss_conf 648873774378885110026212347786368988873211011347877699814621889--------9999-----
Q ss_pred CCCCEEEEEC-CCCCCCCCEEEEEECCCC-CCC--HHHCCCEEE-----EEECC-CCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1681332010-352364427999934865-544--131172479-----98258-7868999899986089899862578
Q gi|254780270|r 465 QNSSFVDHYL-EVEYDLSDVMFIMTANTL-NIP--LPLMDRMEI-----IRIAG-YTEEEKLQIAKNHLVKKVLTEHALK 534 (820)
Q Consensus 465 qn~~f~d~y~-~~~~dls~v~fi~tan~~-~i~--~~l~drme~-----i~~~~-y~~~ek~~i~~~~l~p~~~~~~~~~ 534 (820)
.+| .+|-+ ++++||==...| +.. .+|.|=++. +.|.- |=..++=.|+..= .-=.+|-.
T Consensus 474 -------~lL~a~P~~-a~lllVGD~DQLPSV~pG~VL~DLi~s~~iP~~~LT~vyRQ~~~S~Ii~~A----h~~~~G~~ 541 (769)
T TIGR01448 474 -------SLLAAVPDH-ARLLLVGDADQLPSVGPGQVLKDLIQSKVIPVTRLTKVYRQAEGSSIITLA----HKILQGEA 541 (769)
T ss_pred -------HHHHHCCCC-CEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEECCCCHHHHHH----HHHHCCCC
T ss_conf -------998617977-779888376888988644089999846886612121112411366467888----98731788
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC----C-------CEECCCH----HHHHHHHCCCC
Q ss_conf 1313228999999973177410234788879999898765421178----5-------2012796----78675305200
Q gi|254780270|r 535 QEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNS----D-------TTVSINE----NNLQDYLGVPR 599 (820)
Q Consensus 535 ~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~----~-------~~~~i~~----~~l~~~lg~~~ 599 (820)
+ +.-+..+...+-..-.-+++.-..-++|..+++++......+. + .+-.+.- +.|++.|-|++
T Consensus 542 P--vlnss~~~~Df~~~~~~~s~~e~~~~~i~~~v~~~~~~a~~~Gi~~~dIQVLaPM~kG~~Gi~~LN~~Lq~~LNP~q 619 (769)
T TIGR01448 542 P--VLNSSSAKKDFKFLKLDRSEPEEAAKHIPLMVEKIVGAAKKKGIPGADIQVLAPMYKGELGIKALNQELQDLLNPKQ 619 (769)
T ss_pred C--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 7--52324467667777640010106667899999887789871798600001525898984017888899999708832
Q ss_pred C-CCCCHHC-------C----------------CCCCCCCEEEECCCC
Q ss_conf 0-3320002-------2----------------336500000000016
Q gi|254780270|r 600 Y-KYGKIEG-------E----------------DQVGIVTGLAWTEVG 623 (820)
Q Consensus 600 ~-~~~~~~~-------~----------------~~~G~v~GLa~t~~G 623 (820)
- +...++- . .-.|++.++.|-..+
T Consensus 620 kG~~~~~~~~~~~~R~GDrV~Qt~Ndyn~e~FNGD~G~I~~i~~a~~~ 667 (769)
T TIGR01448 620 KGDQEVIELKEVEYRKGDRVMQTKNDYNKEVFNGDLGVIVEIEKAKEG 667 (769)
T ss_pred CCCCCEEEECCEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECHHCC
T ss_conf 378520651555446887246520076555336663044564002203
No 447
>COG4240 Predicted kinase [General function prediction only]
Probab=94.67 E-value=0.26 Score=28.79 Aligned_cols=202 Identities=20% Similarity=0.242 Sum_probs=101.8
Q ss_pred HHHHHHHHHH--HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCH-----HHHC---C-CCCCCC
Q ss_conf 9999999999--842444673599860565650279999997708824-99861888888-----8835---6-320014
Q gi|254780270|r 349 ERIIEYLAVQ--MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-VRMSLGGVYDE-----ADIR---G-HRRTYI 416 (820)
Q Consensus 349 ~rile~lav~--~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-~~islgg~~d~-----~~i~---g-h~~ty~ 416 (820)
+.+|++++-. ++....+.-|+.+.||-|.|||+++--|-.-|.++. .|+.--.+.|- ..++ - |-+---
T Consensus 31 dl~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~ 110 (300)
T COG4240 31 DLHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQT 110 (300)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHCCCHHCC
T ss_conf 98778898644544212796399852688876535999999999973653068866455310438999998733804302
Q ss_pred CCCCH--------HHHHHHHHCCCCCEEEEEECHHHH---HHHCCCCHHHHHHHHCCCCCCCCE-EEEEC------C-CC
Q ss_conf 56712--------899999832788739999331554---231177115566554060016813-32010------3-52
Q gi|254780270|r 417 GSMPG--------RIIQSLKRAKRSNPLLLLDEIDKM---GSDLRGDPSAALLEVLDPAQNSSF-VDHYL------E-VE 477 (820)
Q Consensus 417 ga~pg--------~ii~~l~~~~~~npv~~ldeidk~---~~~~~gdp~~allevldp~qn~~f-~d~y~------~-~~ 477 (820)
-..|| -...++.+-+. + ..+--.||- |.+-|++ -.|-..| .|-.+ + -|
T Consensus 111 RGlpGTHD~tlglnVLnai~~g~~--~-V~lPrfDKS~f~gagDR~p----------~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 111 RGLPGTHDPTLGLNVLNAIARGGP--T-VPLPRFDKSAFAGAGDRAP----------QTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC--C-CCCCCCCCHHCCCCCCCCC----------CCCCEECCEEEEEEEEEEEECCC
T ss_conf 699987761789999999965899--8-6666544020157787898----------65412212049998500641244
Q ss_pred CCCCCEEEEEECCCC----------------CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 364427999934865----------------5441311724799825878689998999860898998625781313228
Q gi|254780270|r 478 YDLSDVMFIMTANTL----------------NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCIS 541 (820)
Q Consensus 478 ~dls~v~fi~tan~~----------------~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~ 541 (820)
+| -.+|-+-+|++ .--.||.||+ ++...-+--.|..-|-|-.|.+.-=.....--++
T Consensus 178 id--p~ll~~p~n~l~~~ed~a~~~dvN~kLa~Y~pL~~rI-----dsLillta~din~vy~WRlQqEhkliAr~~kgms 250 (300)
T COG4240 178 ID--PELLAAPVNALEAAEDGAWRADVNDKLAPYRPLFDRI-----DSLILLTAPDINTVYAWRLQQEHKLIARLAKGMS 250 (300)
T ss_pred CC--HHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHH-----HHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89--9993798863022113227888775520107899986-----3425742551488999988878999998863686
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999731774102347888799998987654
Q gi|254780270|r 542 DGVLLDIIRLFTHEAGVRSFERALMKIARKAVTK 575 (820)
Q Consensus 542 ~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~ 575 (820)
|+.+...++.|- |.|+-.+..+.+.++..
T Consensus 251 deqv~efvn~ym-----rsl~lylq~ls~~~al~ 279 (300)
T COG4240 251 DEQVSEFVNAYM-----RSLELYLQRLSEWIALD 279 (300)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCC
T ss_conf 888999999888-----99999998888888718
No 448
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.045 Score=34.50 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++|++||-|.|||++.+.||--+.-.--.|.+.|.
T Consensus 24 ~~Ge~~~ivGpSG~GKSTllr~i~Gl~~p~~G~I~~~g~ 62 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE 62 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899899999999983999999998599999639999999
No 449
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=94.65 E-value=0.032 Score=35.63 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=27.1
Q ss_pred ECCCCCCHHHHHHHHH---HHHCCCEEEEECCCCCC
Q ss_conf 6056565027999999---77088249986188888
Q gi|254780270|r 372 VGPPGVGKTSLAQSIA---KATGRQYVRMSLGGVYD 404 (820)
Q Consensus 372 ~gppgvGKts~~~sia---~al~r~f~~islgg~~d 404 (820)
+||||.|||+.++++. +.+||+..-|.|---.+
T Consensus 2 iGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e 37 (234)
T pfam03029 2 VGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAE 37 (234)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 898989889999999999997799759997898665
No 450
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.65 E-value=0.043 Score=34.65 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|.+++||=|.|||++-+.|+-.+.----.|...|
T Consensus 24 ~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 61 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN 61 (195)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 79979999999998199999999679889840899999
No 451
>KOG0479 consensus
Probab=94.64 E-value=0.051 Score=34.12 Aligned_cols=159 Identities=26% Similarity=0.323 Sum_probs=94.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH-----CC-CCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCCC
Q ss_conf 987766520116899999999999984-----24-446735-9986056565027999999770882499861--88888
Q gi|254780270|r 334 IRILDQDHFGLEKVKERIIEYLAVQMR-----VI-KNKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSL--GGVYD 404 (820)
Q Consensus 334 ~~iLd~~hyGl~~vK~rile~lav~~~-----~~-~~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~isl--gg~~d 404 (820)
.+.|--..||++-||+-|+-.| ++-. |+ ..+|-| ++|||-|-|-|..|-+-+-++--|-...-.- .||.=
T Consensus 296 a~SLAPSI~GH~~vKkAillLL-lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGL 374 (818)
T KOG0479 296 ARSLAPSIYGHDYVKKAILLLL-LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGL 374 (818)
T ss_pred HHCCCCCCCCHHHHHHHHHHHH-HCCCEECCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 6503762035799999999998-545012057886222520389846952789999999984154001036888777551
Q ss_pred H-----HHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHH-------------------
Q ss_conf 8-----8835632001456712899999832788739999331554231177115566554-------------------
Q gi|254780270|r 405 E-----ADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEV------------------- 460 (820)
Q Consensus 405 ~-----~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allev------------------- 460 (820)
- -.=.|-||--.|||- =.-..|.-+||.||||.--|- |.-||
T Consensus 375 TAAVTtD~eTGERRLEAGAMV----------LADRGVVCIDEFDKMsDiDRv----AIHEVMEQqtVTIaKAGIHasLNA 440 (818)
T KOG0479 375 TAAVTTDQETGERRLEAGAMV----------LADRGVVCIDEFDKMSDIDRV----AIHEVMEQQTVTIAKAGIHASLNA 440 (818)
T ss_pred EEEEEECCCCCHHHHHCCCEE----------ECCCCEEEEHHCCCCCCHHHH----HHHHHHHCCEEEEEECCCHHHHCC
T ss_conf 467741555313434238368----------705855873100222430378----999998605388671100020235
Q ss_pred ------------------CCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHH---CCCEEEEEECCCC
Q ss_conf ------------------06001681332010352364427999934865-544131---1724799825878
Q gi|254780270|r 461 ------------------LDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPL---MDRMEIIRIAGYT 511 (820)
Q Consensus 461 ------------------ldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l---~drme~i~~~~y~ 511 (820)
.+|.||-...|..| --||| +||.+-..- ++..-+ -=||+.-.-+||-
T Consensus 441 RCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLL-SRFDL---lFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~ 509 (818)
T KOG0479 441 RCSVLAAANPVYGQYDQSKTPMENIGLPDSLL-SRFDL---LFVVLDDIDADIDRMISEHVLRMHRYLTPGEE 509 (818)
T ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCCHHHH-HHHCE---EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 11244313764434677788565158817777-54217---78872135505777889999988632688666
No 452
>KOG1803 consensus
Probab=94.64 E-value=0.036 Score=35.24 Aligned_cols=140 Identities=16% Similarity=0.281 Sum_probs=66.2
Q ss_pred CEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 27999934865544131172479982587868999899986089899862578131322899999997317741023478
Q gi|254780270|r 482 DVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSF 561 (820)
Q Consensus 482 ~v~fi~tan~~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l 561 (820)
-.+|+-|++.-. --+|-|--++.||+.+--..|+..|. +.+.+.|+.+.+|- ||.-|.-- |-
T Consensus 477 PlvlvDT~~~~~----~e~~~e~~~~~S~~N~gEa~Iv~~Hv--~~L~~~gV~p~dIa--------VIsPY~aQ--v~-- 538 (649)
T KOG1803 477 PLVLVDTQGEKD----EEKRGEEEELGSKYNEGEAKIVMEHV--KRLLEAGVQPSDIA--------VISPYNAQ--VS-- 538 (649)
T ss_pred CEEEEECCCCHH----HHHCCCHHHCCCCCCHHHHHHHHHHH--HHHHHCCCCHHHEE--------EECCCHHH--HH--
T ss_conf 679996566054----44042033324547778899999999--99998499856737--------86551688--88--
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC----CCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCC
Q ss_conf 88799998987654211785201279678675305200----03320002233650000000001680799999997489
Q gi|254780270|r 562 ERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR----YKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGK 637 (820)
Q Consensus 562 ~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~----~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~g~ 637 (820)
+.| .........+....+..+-|.++ |.--+......+|-. |+.=-.-+..+..+
T Consensus 539 ------llR------~~~~~~~~~veV~TVD~fQGrEkdvVIfsmVRSN~k~evGFL---------~e~RRLNVAiTRaR 597 (649)
T KOG1803 539 ------LLR------EEDEEDFRDVEVGTVDGFQGREKDVVIFSLVRSNDKGEVGFL---------GETRRLNVAITRAR 597 (649)
T ss_pred ------HHH------HCCCCCCCCCEEECCCCCCCCEEEEEEEEEEEECCCCCCCCC---------CCCCEEEEEEEECC
T ss_conf ------875------303566766346021253552101899999963676544434---------77643567887324
Q ss_pred CCEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 972443256899999999999999
Q gi|254780270|r 638 GEITITGNLKEIMKESILAASSYV 661 (820)
Q Consensus 638 g~l~lTG~lg~vmkES~~~A~s~~ 661 (820)
-.+.+-|. |.+|+|....-..|+
T Consensus 598 Rh~~vIgd-s~tl~~~~~~l~k~~ 620 (649)
T KOG1803 598 RHFVVIGD-SRTLKEGNEFLKKLV 620 (649)
T ss_pred CEEEEECC-CHHHHHHHHHHHHHH
T ss_conf 13899818-088876689999999
No 453
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.63 E-value=0.039 Score=34.96 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=28.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||+|.+.|+.-+.-.--.|.+.|
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~g 66 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG 66 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 69989999999998699999999728987886699899
No 454
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.62 E-value=0.05 Score=34.18 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=28.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|-|||+|.+.|+--+.-.--.|.+.|
T Consensus 34 ~~GE~v~ivG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G 71 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG 71 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 99989999999985899999999669999967999999
No 455
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.58 E-value=0.035 Score=35.36 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 673599860565650279999997708
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
||-++-|.|.||.|||+||+.+.+-|.
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~ 27 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLF 27 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 988999889899999999999999999
No 456
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.048 Score=34.29 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|++|+||-|.|||++.+.|+--+...--.|.+.|
T Consensus 25 ~~Gei~~liGpNGaGKSTLlk~l~Gl~~p~~G~I~~~G 62 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62 (271)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 38979999999998099999999668888860799999
No 457
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=94.56 E-value=0.049 Score=34.24 Aligned_cols=39 Identities=36% Similarity=0.542 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+++|+||-|.|||++.+.||--+.----.|.++|.
T Consensus 41 ~~GE~~~llGpSGsGKSTLlr~iaGl~~p~sG~I~~~G~ 79 (378)
T PRK09452 41 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ 79 (378)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 999899999899976999999997699998469999999
No 458
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=94.56 E-value=0.046 Score=34.45 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.++||+||-|-|||+|-|.|+..+.----+|.+.|.
T Consensus 26 ~~GEi~gLIGPNGAGKSTLLk~I~Gll~P~~G~V~l~G~ 64 (409)
T PRK09536 26 REGHLVGVVGPNGAGKTTLLRAMNGLITPTAGTVLVAGD 64 (409)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899899999998727999999996688889639999999
No 459
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.55 E-value=0.042 Score=34.75 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||+|.+.|+-.+...--.|.+.|
T Consensus 24 ~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g 61 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 69989999889999899999999568577787389999
No 460
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.044 Score=34.60 Aligned_cols=28 Identities=36% Similarity=0.644 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 4673599860565650279999997708
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
.+|.+++++||-|.|||++.++|+--+.
T Consensus 24 ~~Ge~~~iiG~SGsGKSTll~~i~gL~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999999999729999999975999
No 461
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.54 E-value=0.042 Score=34.72 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 599860565650279999997708824998618
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLG 400 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islg 400 (820)
+||+-|+-|+||||+++.+|+.++-++++=..+
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~~~~~~~Ep~~ 33 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE 33 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 989988888889999999999669948967888
No 462
>KOG0964 consensus
Probab=94.54 E-value=0.41 Score=27.26 Aligned_cols=11 Identities=0% Similarity=0.111 Sum_probs=6.2
Q ss_pred EEECCCEEEEE
Q ss_conf 87079819999
Q gi|254780270|r 120 YIEREDFLEAI 130 (820)
Q Consensus 120 i~~~~pyl~A~ 130 (820)
|....||+.+.
T Consensus 130 FSrsNPYyIV~ 140 (1200)
T KOG0964 130 FSRSNPYYIVP 140 (1200)
T ss_pred CCCCCCCEEEE
T ss_conf 66579826730
No 463
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.53 E-value=0.051 Score=34.15 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+||.||-|.|||++-+.|+-.+.-.-=+|.+.|
T Consensus 24 ~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~I~~~g 61 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 99959999999996199999999779999862999999
No 464
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.51 E-value=0.04 Score=34.95 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+++++||-|.|||++++.|+.-+.-.--.|.++|.
T Consensus 31 ~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~I~i~G~ 69 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69 (279)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 799899999999965999999997288888964999999
No 465
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.51 E-value=0.061 Score=33.52 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECC
Q ss_conf 24446735998605656502799999977----08824998618
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA----TGRQYVRMSLG 400 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~a----l~r~f~~islg 400 (820)
.+=.+|...++.|+||+|||+++-.+|.. .|++...+|+-
T Consensus 14 gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slE 57 (186)
T pfam03796 14 GGLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLE 57 (186)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 69888817999967999879999999999999709966875475
No 466
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.51 E-value=0.044 Score=34.60 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 4673599860565650279999997708
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
.+|..+|+|||.|-|||+|.+.|+.-+.
T Consensus 61 ~~Ge~vaIVG~sGSGKSTLl~lL~gl~~ 88 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 4999999999999819999999957872
No 467
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.50 E-value=0.038 Score=35.08 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|++++||-|.|||+|.+.|+-.+...--.|.+.|
T Consensus 25 ~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~I~~~g 62 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62 (211)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 49979999889999899999999646779888778999
No 468
>PRK13544 consensus
Probab=94.48 E-value=0.047 Score=34.35 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+.+|+||-|.|||+|-+.||.-+....-.|.+.|.
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p~~G~I~~~G~ 63 (208)
T PRK13544 25 KQNSLTLVIGNNGSGKTSLLRLLAGLIPITHGNIKYNGE 63 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 299499999999998999999995880689748999999
No 469
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.47 E-value=0.42 Score=27.14 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC---CCCCCHHHHHHHH-------HHHHCCCEEEEEC
Q ss_conf 68899877665201168999999999999842444673599860---5656502799999-------9770882499861
Q gi|254780270|r 330 LDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVG---PPGVGKTSLAQSI-------AKATGRQYVRMSL 399 (820)
Q Consensus 330 l~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~g---ppgvGKts~~~si-------a~al~r~f~~isl 399 (820)
+..+..+|..+ +..+-|-.+++-| .+.++..||++.|+- ..+=-|--.||++ |.|-||.|+-+..
T Consensus 242 ~~l~~~~L~~e-Fy~kl~e~kLl~Y----r~~gk~~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF 316 (437)
T COG2425 242 ASLADPILSVE-FYRKLVEKKLLTY----RLQGKSEGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILF 316 (437)
T ss_pred HHHHHHHHHHH-HHHHHHHCCCHHH----HHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 87652887899-9998524221135----651588798799995888857828899999999999999884305389995
Q ss_pred CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC-HHHHHHHCCC--CHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 888888883563200145671289999983278873999933-1554231177--1155665540600168133201035
Q gi|254780270|r 400 GGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE-IDKMGSDLRG--DPSAALLEVLDPAQNSSFVDHYLEV 476 (820)
Q Consensus 400 gg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde-idk~~~~~~g--dp~~allevldp~qn~~f~d~y~~~ 476 (820)
-. ...+-...-|.+-++| ||.++..|.| |+++||...++--++....+
T Consensus 317 ~s------------------------~~~~~el~~k~~~~~e~i~fL~~~f~GGTD~~~~l~~al~~~k~~~~~~----- 367 (437)
T COG2425 317 DS------------------------EVIEYELYEKKIDIEELIEFLSYVFGGGTDITKALRSALEDLKSRELFK----- 367 (437)
T ss_pred CC------------------------CCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC-----
T ss_conf 25------------------------2025550577457999999996506898885899999999864366567-----
Q ss_pred CCCCCCEEEEEECCC
Q ss_conf 236442799993486
Q gi|254780270|r 477 EYDLSDVMFIMTANT 491 (820)
Q Consensus 477 ~~dls~v~fi~tan~ 491 (820)
++.+||+-.-+
T Consensus 368 ----adiv~ITDg~~ 378 (437)
T COG2425 368 ----ADIVVITDGED 378 (437)
T ss_pred ----CCEEEEECCHH
T ss_conf ----77899804376
No 470
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.46 E-value=0.053 Score=33.97 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=27.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||+|.+.+..-+.-. -.|.++|
T Consensus 28 ~~Ge~vaIvG~sGsGKSTLl~lL~gl~~~~-G~I~idg 64 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDG 64 (275)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEECC
T ss_conf 799999999999997999999996035789-5399998
No 471
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.45 E-value=0.051 Score=34.12 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+++++||-|.|||++.+.|+..+..---+|.+.|.
T Consensus 23 ~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~~g~ 61 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 699799999899988999999995798998728999999
No 472
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=94.42 E-value=0.057 Score=33.72 Aligned_cols=50 Identities=34% Similarity=0.517 Sum_probs=33.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9986056565027999999770882499861888888883563200145671289999983278873999933
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
++.+|-|-|||.||--+++ |.+++=+|++||.- ..+......+-+.|+|-
T Consensus 124 v~vvG~PNVGKSSlIN~L~----------------------~~k~~~v~~~PG~T-k~~q~v~l~~~i~L~Dt 173 (282)
T PRK09563 124 AMIIGIPNVGKSTLINRLA----------------------GKKIAKTGNRPGVT-KSQQWIKLGKGLELLDT 173 (282)
T ss_pred EEEEECCCCCHHHHHHHHH----------------------CCCEEEECCCCCCE-EEEEEEEECCCEEEECC
T ss_conf 9997069776799999874----------------------77058767965410-02589995798899668
No 473
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.054 Score=33.94 Aligned_cols=38 Identities=32% Similarity=0.538 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||+|.+.||--..---=+|.+.|
T Consensus 26 ~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p~~G~I~~~g 63 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG 63 (239)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999997799999999769999863999999
No 474
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=94.38 E-value=0.3 Score=28.27 Aligned_cols=179 Identities=23% Similarity=0.314 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 04678999852224788578888899999998---753110257899999876540415876632210688998776652
Q gi|254780270|r 265 RDEISDFEARISKIRLSKEAREKALSELQKLR---QMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDH 341 (820)
Q Consensus 265 ~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~---~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~h 341 (820)
++-++||++-|-.+.+.-++-.++.++|+.-- +..+..-=+.++..||... +.+
T Consensus 4 e~~~EELE~~Ll~~Dv~~~~v~~i~~~l~~~~~~~~~~~~~~~~e~~~~~l~~~---------------------~~~-- 60 (284)
T TIGR00064 4 EDFFEELEEILLESDVGLEVVEKIIEELKKELVGKKVKDEEKLKEILKEALKEI---------------------LKE-- 60 (284)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH---------------------HHH--
T ss_conf 368998999999850518999999999887540355770789999999999998---------------------741--
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 0116899999999999984244467359986056565027-999999770882499861888888883563200145671
Q gi|254780270|r 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTS-LAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420 (820)
Q Consensus 342 yGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts-~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~p 420 (820)
...+.+.+....-.......++.++.|||==|||||| ||| +|+-|.-.=.++=|+= .| |+-.|==
T Consensus 61 ---~~~~~~~~~~~~~~~~~~~~kp~Vil~VGVNG~GKTTTIaK-LA~~l~~~Gk~V~laA-gD---------TFRAAA~ 126 (284)
T TIGR00064 61 ---ILDKDTLLDLEQIEELPEEKKPNVILFVGVNGVGKTTTIAK-LANKLKKQGKSVLLAA-GD---------TFRAAAI 126 (284)
T ss_pred ---CCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHH-HHHHHHHCCCEEEEEC-CC---------HHHHHHH
T ss_conf ---12321133443344301478977999984408860102889-9999987499089982-75---------2479999
Q ss_pred HHHHHHHHHCCCCCEEEEEECHHHHHHHCC-CCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHC
Q ss_conf 289999983278873999933155423117-7115566554060016813320103523644279999348655441311
Q gi|254780270|r 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLR-GDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLM 499 (820)
Q Consensus 421 g~ii~~l~~~~~~npv~~ldeidk~~~~~~-gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~ 499 (820)
=.+=+=-.+.|| ||| +.... .||||.-..=.+-..-.+. +|+||=||==++.-..|+
T Consensus 127 EQL~~Wa~R~gv--~vi--------~~~~gn~DPAaV~fDAi~~Ak~~ni------------DvvliDTAGRLqnk~NLm 184 (284)
T TIGR00064 127 EQLEVWAKRLGV--DVI--------KQKEGNADPAAVIFDAIQAAKARNI------------DVVLIDTAGRLQNKVNLM 184 (284)
T ss_pred HHHHHHHHHHCC--EEE--------ECCCCCCCCHHHHHHHHHHHHHCCC------------CEEEEECCCCCCCCHHHH
T ss_conf 999998988387--554--------0788988717899998999987499------------789973475454662039
Q ss_pred CCE
Q ss_conf 724
Q gi|254780270|r 500 DRM 502 (820)
Q Consensus 500 drm 502 (820)
|=|
T Consensus 185 ~EL 187 (284)
T TIGR00064 185 DEL 187 (284)
T ss_pred HHH
T ss_conf 999
No 475
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.38 E-value=0.33 Score=28.00 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=33.1
Q ss_pred EECCCCCCHHHHCCC--CCCCCCCCCHHHHHHHHHCC--CCC-EEEEEECHHHHHH-HCCCC
Q ss_conf 861888888883563--20014567128999998327--887-3999933155423-11771
Q gi|254780270|r 397 MSLGGVYDEADIRGH--RRTYIGSMPGRIIQSLKRAK--RSN-PLLLLDEIDKMGS-DLRGD 452 (820)
Q Consensus 397 islgg~~d~~~i~gh--~~ty~ga~pg~ii~~l~~~~--~~n-pv~~ldeidk~~~-~~~gd 452 (820)
...||..-+.+++-- .---+=|.|||+++-+++.. ..+ -.+.|||.|+|-. +|..|
T Consensus 117 ~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD~lld~gF~~~ 178 (423)
T PRK04837 117 LAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKD 178 (423)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCCCHHH
T ss_conf 99899887999998717999899891899999864221236642899634465430263999
No 476
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.033 Score=35.55 Aligned_cols=38 Identities=29% Similarity=0.412 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|.+|+||-|-|||++-+.|+--+.---=.|.+.|
T Consensus 24 ~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i~G 61 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61 (210)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79959999989998499999999600266899899999
No 477
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.37 E-value=0.06 Score=33.59 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|..++++||-|.|||+|.+.|+.-+.-.--.|.+.|.
T Consensus 32 ~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G~I~idg~ 70 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI 70 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCE
T ss_conf 699999999999987999999999872888878999999
No 478
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.063 Score=33.44 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4673599860565650279999997
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAK 388 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~ 388 (820)
.+|.+++++||.|.|||+|.+.|+-
T Consensus 31 ~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 2883999999999988999999837
No 479
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.048 Score=34.31 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 73599860565650279999997708824
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQY 394 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f 394 (820)
.++|.+.||=|+||||||.++|+-||-+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 60899844644687899999998838850
No 480
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.29 E-value=0.054 Score=33.95 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 4673599860565650279999997708
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
.+|.|++|+||-|-|||+|.+.|+-.+.
T Consensus 48 ~~GEivgllG~NGaGKSTLlk~I~Gl~~ 75 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5998999998998619999999967988
No 481
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.29 E-value=0.23 Score=29.10 Aligned_cols=98 Identities=24% Similarity=0.394 Sum_probs=59.8
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH--HCCCCCCC
Q ss_conf 6652011689999999999998424446735998605656502799999977088249986188888888--35632001
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD--IRGHRRTY 415 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~--i~gh~~ty 415 (820)
+-+-.|+..-....++ .+.....| ++.+.||+|-|||+...++-..++++-.. +=-+.|..| +.|-..+-
T Consensus 58 ~L~~LG~~~~~~~~l~-----~~~~~~~G-lilitGptGSGKtTtl~a~l~~~~~~~~~--i~tiEdPvE~~~~~~~Q~~ 129 (264)
T cd01129 58 DLEKLGLKPENLEIFR-----KLLEKPHG-IILVTGPTGSGKTTTLYSALSELNTPEKN--IITVEDPVEYQIPGINQVQ 129 (264)
T ss_pred CHHHHCCCHHHHHHHH-----HHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCCCCCEEE
T ss_conf 9879579999999999-----99708998-89997899997799999999864368850--8998676314568873576
Q ss_pred CCCCCH-HHHHHHHHCCCCCE-EEEEECHH
Q ss_conf 456712-89999983278873-99993315
Q gi|254780270|r 416 IGSMPG-RIIQSLKRAKRSNP-LLLLDEID 443 (820)
Q Consensus 416 ~ga~pg-~ii~~l~~~~~~np-v~~ldeid 443 (820)
++.-.| -.-++|+.+--.+| ||+++||.
T Consensus 130 v~~~~g~~~~~~lr~~LR~dPDvi~igEiR 159 (264)
T cd01129 130 VNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ECCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 166668789999999855699988746889
No 482
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.28 E-value=0.038 Score=35.11 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC
Q ss_conf 4673599860565650279999997708824998618888888835
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~ 409 (820)
.+|..++++||-|-||||+.+.|+.-+.-.-=.|-++|. |-+++.
T Consensus 26 ~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~-~i~~~~ 70 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV-PVSDLE 70 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCE-EHHHHH
T ss_conf 699999999999875999999998617667886999999-889978
No 483
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.25 E-value=0.065 Score=33.32 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.|+||+||-|-|||++.+.|+-.+.---=.|.+.|.
T Consensus 26 ~~Gei~~liGpNGaGKSTLl~~i~Gl~~p~~G~I~~~G~ 64 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGT 64 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899899999899975999999996795788559999999
No 484
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.24 E-value=0.059 Score=33.61 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 467359986056565027999999770
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al 390 (820)
.+|.+++++||-|.|||++.+.|+-.+
T Consensus 33 ~~GE~v~iiG~sGsGKSTLl~~i~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899899999999940999999996699
No 485
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.23 E-value=0.051 Score=34.09 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=25.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 4467359986056565027999999770882
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
=..|.|.-++||||+|||++|-.+|.....+
T Consensus 16 ip~G~ItEi~G~~gsGKT~l~lqla~~~q~~ 46 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 8888399999999998999999999998542
No 486
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.23 E-value=0.058 Score=33.71 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|..+++|||.|-|||||.+.|+.-+.-.--+|.++|.
T Consensus 27 ~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~ 65 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGV 65 (238)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCE
T ss_conf 699999999999998999999982386188518999999
No 487
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.057 Score=33.77 Aligned_cols=39 Identities=38% Similarity=0.538 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+.+++||-|.|||+|-+.||--+.-.--+|.+.|.
T Consensus 22 ~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G~ 60 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV 60 (211)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899899999999955999999997699988529999999
No 488
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.23 E-value=0.057 Score=33.76 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 467359986056565027999999770882
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
.+|.|++++||-|.|||+|.|.|+..+.-.
T Consensus 23 ~~GEiv~liGpNGaGKSTLlk~l~Gll~p~ 52 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPD 52 (246)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 579899999799976999999997787888
No 489
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.23 E-value=0.051 Score=34.09 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 4673599860565650279999997708
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
.+|..++++||=|.|||+|.|.|+-.+.
T Consensus 343 ~~Ge~ialvG~NGsGKSTLlk~l~G~l~ 370 (632)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQ 370 (632)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7887799988988427799998606668
No 490
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.22 E-value=0.049 Score=34.27 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHH-HHHHHC--CCEEEEE
Q ss_conf 444673599860565650279999-997708--8249986
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQS-IAKATG--RQYVRMS 398 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~s-ia~al~--r~f~~is 398 (820)
+=.+|.++.+.||||+|||.+|.. ++.++. .+...++
T Consensus 28 G~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~ 67 (241)
T PRK06067 28 GIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAIT 67 (241)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9779908999807998879999999999986798299999
No 491
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.055 Score=33.85 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 46735998605656502799999977088
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGR 392 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r 392 (820)
.+|.+++++||-|.|||++++.|+.-+.-
T Consensus 31 ~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~ 59 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999996899999999638998
No 492
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.22 E-value=0.051 Score=34.09 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9842444673599860565650279999997
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK 388 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~ 388 (820)
++++...+-+=++++|++|+|||||.+.+..
T Consensus 6 ~~~k~~~~~~Ki~ilG~~~sGKTsll~~l~~ 36 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7765568775899997999988999999856
No 493
>PRK10744 phosphate transporter subunit; Provisional
Probab=94.21 E-value=0.033 Score=35.50 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=27.3
Q ss_pred HHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9984244-4673599860565650279999997708
Q gi|254780270|r 357 VQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 357 v~~~~~~-~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
+...+=+ .+|.++||+||-|.|||++.|.|+.-++
T Consensus 26 L~~vsl~i~~Ge~~~liG~nGaGKSTLlk~i~gl~~ 61 (257)
T PRK10744 26 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMYE 61 (257)
T ss_pred ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 814289988998999999999819999999987651
No 494
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.067 Score=33.22 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.+++++||-|.|||+|.+.|+..+.-.--.|.+.|
T Consensus 25 ~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p~~G~I~~~g 62 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62 (241)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 99989999999983399999999749999855999999
No 495
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.026 Score=36.35 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|..+|++||.|-|||||.+.|+.-+.-.--.|.++|.
T Consensus 27 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~ 65 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 799999999999980999999996686678738999999
No 496
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.063 Score=33.40 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
.+|.+++++||-|-|||+|++.|+--+.-..-.|.+||.
T Consensus 18 ~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~~~g~ 56 (276)
T PRK13634 18 PSGSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVTIGER 56 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899899999999969999999997499988749999999
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.067 Score=33.19 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|+|++||-|.|||++.+.|+--+.---=+|.+.|
T Consensus 24 ~~Gei~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g 61 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989999999997399999999759998970899999
No 498
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.12 E-value=0.074 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 467359986056565027999999770
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al 390 (820)
.+|.+++++||-|-|||++.+.|+-.+
T Consensus 25 ~~Ge~~aliG~nGaGKSTLl~~i~G~l 51 (273)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKVLAGEL 51 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999976999999995678
No 499
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.12 E-value=0.044 Score=34.62 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 46735998605656502799999977088249986188
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg 401 (820)
.+|.|++|+||-|.|||++.+.|+-.+.-.--+|.+.|
T Consensus 24 ~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~~~G 61 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG 61 (182)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEECC
T ss_conf 59969999888999926377876698678877599999
No 500
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.12 E-value=0.17 Score=30.06 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-----CC----CEEEEEC-----CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 7359986056565027999999770-----88----2499861-----88888888356320014567128999998327
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKAT-----GR----QYVRMSL-----GGVYDEADIRGHRRTYIGSMPGRIIQSLKRAK 431 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al-----~r----~f~~isl-----gg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~ 431 (820)
..++.+.||=.-|||++-|+||-+. |- ...+++. --+.+...+....=||..-|- ++-+.++.+
T Consensus 29 ~~~~iiTGpN~gGKSt~lkti~l~~ilaq~G~~vpa~~~~~~~~~~i~~~i~~~d~~~~~~StF~~E~~-~~~~il~~~- 106 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLY-QVSKALRLA- 106 (213)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCEEEEECCHHHHHCCCCHHHHHHH-HHHHHHHHC-
T ss_conf 259999899987659999999999999985885767403997212237676764344413258999999-999999858-
Q ss_pred CCCEEEEEECHHHHHHHCCC-CHHHHHHHHCCCCCCC----CEEEEECCC
Q ss_conf 88739999331554231177-1155665540600168----133201035
Q gi|254780270|r 432 RSNPLLLLDEIDKMGSDLRG-DPSAALLEVLDPAQNS----SFVDHYLEV 476 (820)
Q Consensus 432 ~~npv~~ldeidk~~~~~~g-dp~~allevldp~qn~----~f~d~y~~~ 476 (820)
+.+-++|+||+-+=++..-| --+.|++|-|---.|. -|.-||.++
T Consensus 107 ~~~sLvliDEl~~GT~~~eg~ala~a~le~l~~~~~~~~~~~~tTH~~~L 156 (213)
T cd03281 107 TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH
T ss_conf 88865877313478883567999999999999658876649998972787
Done!