HHsearch alignment for GI: 254780270 and conserved domain: pfam00308

Probab=98.49  E-value=4.7e-07  Score=72.23  Aligned_cols=172  Identities=23%  Similarity=0.324  Sum_probs=107.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf             5998605656502799999977088-----24998618888888835632001456712899999832788739999331
Q gi|254780270|r  368 ILCFVGPPGVGKTSLAQSIAKATGR-----QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI  442 (820)
Q Consensus       368 il~l~gppgvGKts~~~sia~al~r-----~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei  442 (820)
T Consensus        36 pl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~------~~~~---~~~~~~l~~~~~~~f~~~l~~~d~l~iDDi  106 (219)
T pfam00308        36 PLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTS------EEFL---NDFVDALRDNKIEAFKKSYRNVDLLLIDDI  106 (219)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEH------HHHH---HHHHHHHHCCCHHHHHHHHHHCCHHHHCCH
T ss_conf             2699889999888999999999998499982888439------9999---988999981888899999763233652236


Q ss_pred             HHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--CC-CCHHHCCCE---EEEEECCCCHHHHH
Q ss_conf             5542311771155665540600168133201035236442799993486--55-441311724---79982587868999
Q gi|254780270|r  443 DKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--LN-IPLPLMDRM---EIIRIAGYTEEEKL  516 (820)
Q Consensus       443 dk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~~-i~~~l~drm---e~i~~~~y~~~ek~  516 (820)
T Consensus       107 ~~l~~~~--~~ee~lf~l~N~~~~~~------------~~lllts~~~p~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~  172 (219)
T pfam00308       107 QFLAGKE--KTQEEFFHTFNALHENN------------KQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRL  172 (219)
T ss_pred             HHHCCCH--HHHHHHHHHHHHHHHCC------------CEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHH
T ss_conf             7656864--78999999999999729------------869997799810024532779999868756611699999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8999860898998625781313228999999973177410234788879999898765
Q gi|254780270|r  517 QIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVT  574 (820)
Q Consensus       517 ~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~  574 (820)
T Consensus       173 ~iL~~~a-----~-----~r~l~l~~~v~~yl~~r~~R~--~r~L~~~L~~L~~~~~~  218 (219)
T pfam00308       173 AILRKKA-----E-----EENINIPNEVLNFIAQRITDN--VRELEGALNRLLAFASF  218 (219)
T ss_pred             HHHHHHH-----H-----HCCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHCC
T ss_conf             9999999-----9-----849999999999999842798--99999999999985507