HHsearch alignment for GI: 254780270 and conserved domain: pfam00437
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.89 E-value=0.044 Score=34.58 Aligned_cols=100 Identities=22% Similarity=0.391 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH--HCCCCCCCCCCCCH--HH
Q ss_conf 999999999998424446735998605656502799999977088249986188888888--35632001456712--89
Q gi|254780270|r 348 KERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEAD--IRGHRRTYIGSMPG--RI 423 (820)
Q Consensus 348 K~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~--i~gh~~ty~ga~pg--~i 423 (820)
T Consensus 125 ~~~~~~~L~~~v---~~~~-~ilIsG~TGSGKTT~l~all~~i~~~~~riit--iED~~El~l~~~~~v~l~~~~~~~t~ 198 (283)
T pfam00437 125 DADIAEFLRQAV---QARG-NILVSGGTGSGKTTLLYALLNEINTDDERIVT--IEDPVEIQLEGPNQVQLNTRLAGVTF 198 (283)
T ss_pred HHHHHHHHHHHH---HCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE--ECCCCEECCCCCCEEEEEECCCCCCH
T ss_conf 599999999999---8197-59998899998899999999840877762787--33785231798878999855887699
Q ss_pred HHHHHHCCCCCE-EEEEECHHHHHHHCCCCHHHHHHHH
Q ss_conf 999983278873-9999331554231177115566554
Q gi|254780270|r 424 IQSLKRAKRSNP-LLLLDEIDKMGSDLRGDPSAALLEV 460 (820)
Q Consensus 424 i~~l~~~~~~np-v~~ldeidk~~~~~~gdp~~allev 460 (820)
T Consensus 199 ~~ll~~~LR~~PD~IivGEi-------R~~Ea~~~l~a 229 (283)
T pfam00437 199 ADLLRAALRQRPDRIMVGEI-------RDGETADILRA 229 (283)
T ss_pred HHHHHHHHCCCCCEEEECCC-------CCHHHHHHHHH
T ss_conf 99999963889998975786-------99899999999