HHsearch alignment for GI: 254780270 and conserved domain: pfam00493
>pfam00493 MCM MCM2/3/5 family.
Probab=99.04 E-value=6.4e-09 Score=86.38 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=111.7
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHC--C---CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
Q ss_conf 877665201168999999999999842--4---44673-59986056565027999999770882499861888888883
Q gi|254780270|r 335 RILDQDHFGLEKVKERIIEYLAVQMRV--I---KNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADI 408 (820)
Q Consensus 335 ~iLd~~hyGl~~vK~rile~lav~~~~--~---~~~g~-il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i 408 (820)
T Consensus 20 ~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~t-sg~~ss-~~GL 97 (327)
T pfam00493 20 RSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYT-SGKGSS-AAGL 97 (327)
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEE-CCCCCC-CCCC
T ss_conf 98597124987999999999808987658888620365118984699815609999999868870883-177665-6776
Q ss_pred CC--------CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 56--------3200145671289999983278873999933155423117711556655406001681332010352364
Q gi|254780270|r 409 RG--------HRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 (820)
Q Consensus 409 ~g--------h~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl 480 (820)
T Consensus 98 Ta~~~~d~~~~~~~l---eaGalv------lAd~Gv~cIDEfdk~~~~d~----saL~EAM--EqqtVsIaKa-Gi~~tL 161 (327)
T pfam00493 98 TAAVVRDPDTGEWTL---EAGALV------LADGGVCCIDEFDKMNEEDR----VAIHEAM--EQQTISIAKA-GIVATL 161 (327)
T ss_pred EEEEEEECCCCCEEE---ECCCEE------ECCCCEEEEECCCCCCHHHH----HHHHHHH--HHCEEEEECC-CEEEEE
T ss_conf 158998068883698---368477------55898278500555887679----9999999--8681776338-538972
Q ss_pred -CCEEEEEECCCC--------------CCCHHHCCCEEEEEEC-CCCH-HHHHHHHHHHHH-----------------HH
Q ss_conf -427999934865--------------5441311724799825-8786-899989998608-----------------98
Q gi|254780270|r 481 -SDVMFIMTANTL--------------NIPLPLMDRMEIIRIA-GYTE-EEKLQIAKNHLV-----------------KK 526 (820)
Q Consensus 481 -s~v~fi~tan~~--------------~i~~~l~drme~i~~~-~y~~-~ek~~i~~~~l~-----------------p~ 526 (820)
T Consensus 162 ~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~~~~~~~~~~~~~~~ 241 (327)
T pfam00493 162 NARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHGEEEEIETEDYVDPE 241 (327)
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 58717998527767737888898885589767745010798840689868899999999998744688655568879999
Q ss_pred HHHHH-CCCC--CCCCCCHHHHHHHHHCCC
Q ss_conf 99862-5781--313228999999973177
Q gi|254780270|r 527 VLTEH-ALKQ--EECCISDGVLLDIIRLFT 553 (820)
Q Consensus 527 ~~~~~-~~~~--~~~~~~~~~i~~ii~~Yt 553 (820)
T Consensus 242 ~l~~yi~~ar~~~~P~ls~ea~~~i~~~y~ 271 (327)
T pfam00493 242 LLRKYIAYARENIFPKLSDEAREKLVNYYV 271 (327)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999999852788779899999999999