HHsearch alignment for GI: 254780270 and conserved domain: pfam01768
>pfam01768 Birna_VP4 Birnavirus VP4 protein. VP4 is a viral protease. The large RNA segment of birnaviruses codes for a polyprotein (N-VP2-VP4-VP3-C).
Probab=96.44 E-value=0.0052 Score=41.60 Aligned_cols=65 Identities=35% Similarity=0.388 Sum_probs=48.4
Q ss_pred CEEE-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEE
Q ss_conf 1474-4888847888730689999999998368887561066368503025000656899999997099699
Q gi|254780270|r 680 IHVH-VPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKV 750 (820)
Q Consensus 680 iHih-~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~v 750 (820)
T Consensus 179 i~v~k~~~~pi--~G~S~qLai~--l~~~~~~~gVP~-~afTG~l~~~-sv~~I~gv~iKa~aAh~lGLpL~ 244 (264)
T pfam01768 179 IVVSKIPAGPI--MGPSAQLAIY--ALVDDIKEGVPR-MAFTGELVGD-SVGEICGVDIKLIAAHELGLPLL 244 (264)
T ss_pred EEEEECCCCCC--CCCHHHHHHH--HHHHHHCCCCCE-EEEEEEECCC-CEEEEECCCHHHHHHHHCCCCCC
T ss_conf 68751347875--5843455699--987510048872-8885102377-35404030122333554288511