HHsearch alignment for GI: 254780270 and conserved domain: pfam03969

>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.15  E-value=0.051  Score=34.12  Aligned_cols=176  Identities=22%  Similarity=0.285  Sum_probs=93.6

Q ss_pred             HHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf             789998522247-8857888889999999875311025789999987654041587663221068899877665201168
Q gi|254780270|r  268 ISDFEARISKIR-LSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEK  346 (820)
Q Consensus       268 i~el~~Ki~~~~-lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~  346 (820)
T Consensus         4 ~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~---------------l~~-~~~~~~~~~------~~~-----------   50 (361)
T pfam03969         4 PQRYTAQLQRGAIFPDVAQANAVPALDRLYQR---------------LQA-ADFVRQSGA------GGK-----------   50 (361)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH---------------HHH-CCCCCCCCH------HHH-----------
T ss_conf             99999998679999998999999999999999---------------971-556555523------444-----------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEE----CCCCCCH-HHHCCCCCCCCCCCC
Q ss_conf             9999999999998424446735998605656502799999977088-249986----1888888-883563200145671
Q gi|254780270|r  347 VKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMS----LGGVYDE-ADIRGHRRTYIGSMP  420 (820)
Q Consensus       347 vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~is----lgg~~d~-~~i~gh~~ty~ga~p  420 (820)
T Consensus        51 --------~-~~~~~~~~~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~~------~dp  115 (361)
T pfam03969        51 --------L-WGRKRSHQPVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQGG------DDP  115 (361)
T ss_pred             --------H-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC------CCC
T ss_conf             --------3-1578879999868988998886999999999867753444566789999999999997667------763


Q ss_pred             HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C------
Q ss_conf             289999983278873999933155423117711556655406001681332010352364427999934865-5------
Q gi|254780270|r  421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N------  493 (820)
Q Consensus       421 g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~------  493 (820)
T Consensus       116 --l~~va~~l~~~~~lLCfDEFq------V~DIaDAMIL-------~rLf~~L----f~-~gvvlV~TSN~~P~~LY~~G  175 (361)
T pfam03969       116 --LPIAADRFANEARLLCFDEFE------VDDIGDAMIL-------GRLFEAL----FA-RGVSLVATSNTAPEQLYRNG  175 (361)
T ss_pred             --HHHHHHHHHHCCCEEEEEEEE------ECCHHHHHHH-------HHHHHHH----HH-CCCEEEEECCCCHHHHHCCC
T ss_conf             --899999997258779976356------1678889999-------9999999----97-79789980899989983687


Q ss_pred             ------CCH--HHCCCEEEEEECCCC
Q ss_conf             ------441--311724799825878
Q gi|254780270|r  494 ------IPL--PLMDRMEIIRIAGYT  511 (820)
Q Consensus       494 ------i~~--~l~drme~i~~~~y~  511 (820)
T Consensus       176 LqR~~FlPfI~ll~~~~~v~~l~~~~  201 (361)
T pfam03969       176 LNRQRFLPAIDLLESHFEVVRVDGPV  201 (361)
T ss_pred             CCHHHHHHHHHHHHHHCEEEEECCCC
T ss_conf             41778899999999867899815987