HHsearch alignment for GI: 254780270 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.58 E-value=4.4e-13 Score=117.90 Aligned_cols=198 Identities=25% Similarity=0.319 Sum_probs=116.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCC
Q ss_conf 65201168999999999999842444673599860565650279999997708824998618888888835632001456
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGS 418 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga 418 (820)
T Consensus 24 ~e~vGQehl~~~l~~~i~a~~~~~~~l~-h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~--------------- 87 (234)
T pfam05496 24 DEYIGQEKVKENLKIFIEAAKKRGEALD-HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--------------- 87 (234)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHH---------------
T ss_conf 6606949999999999998874277766-278878999988899999998408753761426664---------------
Q ss_pred CCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECC-------CCCCCCCEEEE-EECC
Q ss_conf 712899999832788739999331554231177115566554060016813320103-------52364427999-9348
Q gi|254780270|r 419 MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE-------VEYDLSDVMFI-MTAN 490 (820)
Q Consensus 419 ~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~-------~~~dls~v~fi-~tan 490 (820)
T Consensus 88 ~~~di~~~l~~~~-~~~ILFIDEIHr~nK~qq----d~Llp~----vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe 158 (234)
T pfam05496 88 KPGDLAAILTNLE-PGDVLFIDEIHRLNRAVE----EILYPA----MEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTR 158 (234)
T ss_pred HHHHHHHHHHHCC-CCCEEEEECHHHCCHHHH----HHCCCC----CCCCEEEEEECCCCCCEEEECCCCCEEEEEECCC
T ss_conf 3899999998458-998899966543587688----744553----3461699996367663246526897599852156
Q ss_pred CCCCCHHHCCCEEE-EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 65544131172479-98258786899989998608989986257813132289999999731774102347888799998
Q gi|254780270|r 491 TLNIPLPLMDRMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIA 569 (820)
Q Consensus 491 ~~~i~~~l~drme~-i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~ 569 (820)
T Consensus 159 ~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r-----~~~~-----l~i~i~~eal~~IA~~s--~Gd~R~ALnlLe~v~ 226 (234)
T pfam05496 159 AGLLTSPLRDRFGIVLRLEFYSVEELEEIVKR-----SARI-----LGVEIDEEGAAEIARRS--RGTPRIANRLLRRVR 226 (234)
T ss_pred CCCCCHHHHHHHHHEEECCCCCHHHHHHHHHH-----HHHH-----CCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_conf 66477779976211244246899999999999-----9998-----39995999999999977--998999989999999
Q ss_pred HHHH
Q ss_conf 9876
Q gi|254780270|r 570 RKAV 573 (820)
Q Consensus 570 r~~~ 573 (820)
T Consensus 227 d~a~ 230 (234)
T pfam05496 227 DFAQ 230 (234)
T ss_pred HHHH
T ss_conf 9998