HHsearch alignment for GI: 254780270 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.94 E-value=4.8e-08 Score=79.74 Aligned_cols=190 Identities=31% Similarity=0.538 Sum_probs=115.4
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCCCC------HHH-----------HCCCCCCCCC--
Q ss_conf 8424446735998605656502799999977088--249986188888------888-----------3563200145--
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR--QYVRMSLGGVYD------EAD-----------IRGHRRTYIG-- 417 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r--~f~~islgg~~d------~~~-----------i~gh~~ty~g-- 417 (820)
T Consensus 43 Ik~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKTE~L~qafRrsIGvrIkE~~eVyEGEV 122 (395)
T pfam06068 43 IKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEALTQAFRKAIGVRIKEEKEVYEGEV 122 (395)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEE
T ss_conf 97277577389987799988899999999974879973450011121256548899999998875568678889999999
Q ss_pred -----------------------------------CCCHHHHHHHHHCCCCC-EEEEEEC----HHHHHHHCC-------
Q ss_conf -----------------------------------67128999998327887-3999933----155423117-------
Q gi|254780270|r 418 -----------------------------------SMPGRIIQSLKRAKRSN-PLLLLDE----IDKMGSDLR------- 450 (820)
Q Consensus 418 -----------------------------------a~pg~ii~~l~~~~~~n-pv~~lde----idk~~~~~~------- 450 (820)
T Consensus 123 ~ei~~~~~~~p~~~~~k~~~~~~itLkT~~~~~~l~l~~~i~e~l~kekV~~GDVI~Id~~sG~V~klGRs~~~a~~~D~ 202 (395)
T pfam06068 123 VELEIEEAENPLSGYGKTIKHGKITLKTTKMEKTLKLGPKIYEQLQKEKVQAGDVIYIDKNTGKVKKLGRSFARATDFDL 202 (395)
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCHHHHHHCCC
T ss_conf 99997414688898765403799999975881787258899999997498668789998587159997623203433266
Q ss_pred ----------CC-----------------HHHH----HHHHCCCCCC----------------------------CCEEE
Q ss_conf ----------71-----------------1556----6554060016----------------------------81332
Q gi|254780270|r 451 ----------GD-----------------PSAA----LLEVLDPAQN----------------------------SSFVD 471 (820)
Q Consensus 451 ----------gd-----------------p~~a----llevldp~qn----------------------------~~f~d 471 (820)
T Consensus 203 ~~~~~V~~P~Gev~K~KEvv~~vTLHDlDv~Nar~qg~~slf~~~~~EIt~elR~eInk~V~~~i~eG~AElvpGVLFID 282 (395)
T pfam06068 203 EATEFVPCPKGEVHKRKEVVQTVTLHDIDVANARPQGILSLFSPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFID 282 (395)
T ss_pred CCCEEEECCCCCCEEEEEEEEEEEHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
T ss_conf 65479778998624688999986123412221575256764179876069999999999999998648679842746885
Q ss_pred E----------ECC--CCCCCCCEEEEEEC---------C--CCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 0----------103--52364427999934---------8--655-4413117247998258786899989998608989
Q gi|254780270|r 472 H----------YLE--VEYDLSDVMFIMTA---------N--TLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKV 527 (820)
Q Consensus 472 ~----------y~~--~~~dls~v~fi~ta---------n--~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~ 527 (820)
T Consensus 283 EvHMLDiEcFsfLnralEs~laPivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRllII~T~py~~~ei~~Ii~iR----- 357 (395)
T pfam06068 283 EVHMLDIECFSFLNRALESELAPIVILATNRGICTIRGTDIISPHGIPLDLLDRLLIITTEPYTREEIKQILEIR----- 357 (395)
T ss_pred CCHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHHH-----
T ss_conf 000000589988877650567876999844652035256775888998777730258856889989999999987-----
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 98625781313228999999973177410234
Q gi|254780270|r 528 LTEHALKQEECCISDGVLLDIIRLFTHEAGVR 559 (820)
Q Consensus 528 ~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR 559 (820)
T Consensus 358 -----a~~E~v~l~~~al~~L~~i-g~~~SLR 383 (395)
T pfam06068 358 -----AQEEGVEISEEALDLLAKI-GEETSLR 383 (395)
T ss_pred -----HHHHCCCCCHHHHHHHHHH-HHHCCHH
T ss_conf -----7760787798999999986-5320299