HHsearch alignment for GI: 254780270 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.66 E-value=6.9e-16 Score=139.13 Aligned_cols=115 Identities=29% Similarity=0.543 Sum_probs=100.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCH---HHHCCCCCCCCCCC-CHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5998605656502799999977088---2499861888888---88356320014567-128999998327887399993
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDE---ADIRGHRRTYIGSM-PGRIIQSLKRAKRSNPLLLLD 440 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~---~~i~gh~~ty~ga~-pg~ii~~l~~~~~~npv~~ld 440 (820)
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~--~p~~VillD 82 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRR--KPYSIVLID 82 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH--CCCCEEEEH
T ss_conf 999889899899999999999967985344885575654256999870589987262426507899983--898489865
Q ss_pred CHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 3155423117711556655406001681332010352364427999934865
Q gi|254780270|r 441 EIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL 492 (820)
Q Consensus 441 eidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~ 492 (820)
T Consensus 83 EIeKa~~----~V~~~LL~ild---~g~~~d~~-g~~v~~~n~i~i~Tsn~g 126 (168)
T pfam07724 83 EIEKAHP----GVQNDLLQILE---GGTLTDKQ-GRKVDFRNTLFIMTGNFG 126 (168)
T ss_pred HHHHHCH----HHHHHHHHHCC---CCCEECCC-CCEEECCCEEEEECCCCC
T ss_conf 7766589----99999998705---87063699-967844647999768737