RPSBLAST alignment for GI: 254780270 and conserved domain: TIGR00416

>gnl|CDD|161868 TIGR00416, sms, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). Length = 454

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 692 DGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVL 751
             P+A +A+  AIVS     P+  ++   GE+ L G + P+  L+E+L  A + G  + +
Sbjct: 369 SEPAADLALLIAIVSSFRDRPLDPDLVFLGEVGLAGEIRPVPSLEERLKEAAKLGFKRAI 428

Query: 752 IPEENIKDLMDIPENVKNGLEIIPVSFMGEVL 783
           +P+ N       P+    G+++I V  +G+ L
Sbjct: 429 VPKAN------SPKTAPEGIKVIGVKKVGDAL 454