HHsearch alignment for GI: 254780271 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=100.00 E-value=0 Score=348.19 Aligned_cols=286 Identities=24% Similarity=0.371 Sum_probs=217.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHH
Q ss_conf 899999742030859999999999986588752121013552256835884073321769999999871---85313101
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMAD 145 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vd 145 (424)
T Consensus 501 ~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~----~~~rPi--gsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~D 574 (823)
T CHL00095 501 IHMEETLHKRIIGQDEAVVAVSKAIRRARVGLK----NPNRPI--ASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLD 574 (823)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----CCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 878887877840769999999999999970899----899974--68998789988779999999999747820258853
Q ss_pred HHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2211111-----------10355633035778876542277654223332233320023333334432102568988753
Q gi|254780271|r 146 ATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLK 214 (424)
Q Consensus 146 aT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLk 214 (424)
T Consensus 575 MSEy~E~hsvsrLIGaPPGYVGy~eGG~-------LTeaVrr~PysVvLfDEIEKAHpd--------------V~nilLQ 633 (823)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQ-------LTEAVRKKPYTVVLFDEIEKAHPD--------------IFNLLLQ 633 (823)
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCC-------HHHHHHCCCCEEEEECHHHHCCHH--------------HHHHHHH
T ss_conf 5101554207674589987667787882-------019887199869986213113889--------------9998876
Q ss_pred HCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 1058701025655643222430243100012322000467898876412343332111100000-001689996410567
Q gi|254780271|r 215 IMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSD-NRPVGEVLRNLESED 293 (424)
Q Consensus 215 ileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D 293 (424)
T Consensus 634 vlDdG--~LtD~~Gr~vdF~NtIIImTSNl-----Gs-----~~i~~--~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~ 699 (823)
T CHL00095 634 ILDDG--RLTDSKGRTIDFKNTLIIMTSNL-----GS-----KVIEK--GGGSLGFKLLEDGTKLDEKQYKRLSNLVNEE 699 (823)
T ss_pred HCCCC--CCCCCCCCEEECEEEEEEECCCC-----CH-----HHHHH--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 51688--43489999884310399971650-----55-----88874--1344343334454322023589999999999
Q ss_pred HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77522068987207842672111057899998742677999999998744989999689999999955106787423689
Q gi|254780271|r 294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRS 373 (424)
Q Consensus 294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~Lrt 373 (424)
T Consensus 700 -l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv----~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R 774 (823)
T CHL00095 700 -LKQYFRPEFLNRLDEIIVFRPLTKDEVWEIA----EIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRR 774 (823)
T ss_pred -HHHHCCHHHHHHCCEEEEECCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf -9843798787327827861899999999999----99999999999968985998889999999958797768136889
Q ss_pred HHHHHHHHHHHCCCC---CCCCCEEEECHH
Q ss_conf 999996777402767---898419998377
Q gi|254780271|r 374 ILEKILLDTMFELPM---LKGVSSVIISDD 400 (424)
Q Consensus 374 IiE~iLedimFe~P~---~~~~~~v~Id~~ 400 (424)
T Consensus 775 ~I~~~i~~~ls~~il~g~~~~g~~v~v~~~ 804 (823)
T CHL00095 775 AIMRLLEDPLAEEVLSFKIKPGDSLVVDVD 804 (823)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 999998899999997488899698999975