HHsearch alignment for GI: 254780271 and conserved domain: COG0324
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis].
Probab=97.29 E-value=0.00031 Score=50.19 Aligned_cols=45 Identities=33% Similarity=0.485 Sum_probs=35.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCC
Q ss_conf 6835884073321769999999871853131012211111103556330
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVEN 161 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dves 161 (424)
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv----Yr~mdIGT 47 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV----YRGLDIGT 47 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHH----CCCCCCCC
T ss_conf 6379998988757789999999982992893023553----18886307