HHsearch alignment for GI: 254780271 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=99.60 E-value=8.1e-14 Score=117.31 Aligned_cols=266 Identities=22% Similarity=0.319 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 878999997420308599999999--999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLA--VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavA--vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
T Consensus 313 Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-------~~~kGp----ILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 313 DLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-------KKLKGP----ILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCC----EEEEECCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 299999874435567116899999999999861-------467885----799978998870118999999958977999
Q ss_pred HHHHHH-HH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 122111-11-------1035563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 145 DATTLT-EA-------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 145 daT~~T-E~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
T Consensus 382 sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~------~NPv~LLDEIDKm~ss~-----rGDPa-----SALLEVL 445 (782)
T COG0466 382 SLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKMGSSF-----RGDPA-----SALLEVL 445 (782)
T ss_pred ECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCC------CCCEEEEECHHHCCCCC-----CCCHH-----HHHHHHC
T ss_conf 54765427775355312335687289999998677------68747864033316777-----78868-----8888626
Q ss_pred CCCEEECCCCCCCCCCCC-C--EEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 587010256556432224-3--0243100012322000467898876412343332111100000001689996410567
Q gi|254780271|r 217 EGTIASVPPQGGRKHPQQ-E--FLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESED 293 (424)
Q Consensus 217 eg~~~~v~~~~grk~~~~-~--~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 293 (424)
T Consensus 446 DPEQN~---------~F~DhYLev~yDLS~VmFiaTANsl------------------------~t-------------- 478 (782)
T COG0466 446 DPEQNN---------TFSDHYLEVPYDLSKVMFIATANSL------------------------DT-------------- 478 (782)
T ss_pred CHHHCC---------CHHHCCCCCCCCHHHEEEEEECCCC------------------------CC--------------
T ss_conf 976567---------6122201676644325888603751------------------------32--------------
Q ss_pred HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77522068987207842672111057899998742677999999998744989999689999999955106787423689
Q gi|254780271|r 294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRS 373 (424)
Q Consensus 294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~Lrt 373 (424)
T Consensus 479 -----IP~PLlDRME-iI~lsgYt~~EKl~IA---k~~LiPk~~~~~gL~~~el~i~d~ai~~iI~-~YTREAGVR~LeR 548 (782)
T COG0466 479 -----IPAPLLDRME-VIRLSGYTEDEKLEIA---KRHLIPKQLKEHGLKKGELTITDEAIKDIIR-YYTREAGVRNLER 548 (782)
T ss_pred -----CCHHHHCCEE-EEEECCCCHHHHHHHH---HHHCCHHHHHHCCCCCCCEEECHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf -----9867843030-5642688869999999---9844568999759982335565899999999-8767621038999
Q ss_pred HHHHHHHHHHHCCCCCCCCCE-EEECHHHHCCCCCEEEEECCCCH
Q ss_conf 999996777402767898419-99837785587881687256511
Q gi|254780271|r 374 ILEKILLDTMFELPMLKGVSS-VIISDDVVKGKACPLNVYTDRRD 417 (424)
Q Consensus 374 IiE~iLedimFe~P~~~~~~~-v~Id~~~V~~~~~p~~~~~~~~~ 417 (424)
T Consensus 549 ~i~ki~RK~~~~i~~~~-~k~~~~i~~~~l~~yLG~~~f~~~~~~ 592 (782)
T COG0466 549 EIAKICRKAAKKILLKK-EKSIVKIDEKNLKKYLGVPVFRYGKAE 592 (782)
T ss_pred HHHHHHHHHHHHHHHCC-CCCCEEECHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999997257-566244278899997398634753112