HHsearch alignment for GI: 254780271 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.35 E-value=6.8e-07 Score=68.84 Aligned_cols=115 Identities=26% Similarity=0.281 Sum_probs=72.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE---------------
Q ss_conf 03085999999999998658875212101355225683588407332176999999987185313---------------
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT--------------- 142 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~--------------- 142 (424)
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-~~------------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~ 68 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-GR------------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLI 68 (325)
T ss_pred CCCCCHHHHHHHHHHHHHC-CC------------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 6433235899999999865-88------------8761003799999789999999999658664334552002244432
Q ss_pred ----EHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf ----1012211111103556-33035778876542277654223332233320023333334432102568988753105
Q gi|254780271|r 143 ----MADATTLTEAGYVGED-VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 143 ----~vdaT~~TE~GYvG~D-vesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
T Consensus 69 ~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE 134 (325)
T COG0470 69 PAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE 134 (325)
T ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCC
T ss_conf 0256886599773213333006999999998604465667726999732032698--------------88876754332
Q ss_pred CC
Q ss_conf 87
Q gi|254780271|r 218 GT 219 (424)
Q Consensus 218 g~ 219 (424)
T Consensus 135 ep 136 (325)
T COG0470 135 EP 136 (325)
T ss_pred CC
T ss_conf 48