HHsearch alignment for GI: 254780271 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=1.4e-45 Score=341.50 Aligned_cols=278 Identities=23% Similarity=0.330 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC---CCEEE
Q ss_conf 878999997420308599999999999865887521210135522568358840733217699999998718---53131
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID---VPFTM 143 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~---~PF~~ 143 (424)
T Consensus 481 kll~le~~L~~rViGQd~AV~~v~~aI----rraRaGL~dp~rPig--sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR 554 (786)
T COG0542 481 KLLNLERRLKKRVIGQDEAVEAVSDAI----RRARAGLGDPNRPIG--SFLFLGPTGVGKTELAKALAEALFGDEQALIR 554 (786)
T ss_pred HHHHHHHHHHCCEECHHHHHHHHHHHH----HHHHCCCCCCCCCCE--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 998679997365017399999999999----998569999998735--78866788656999999999996599744455
Q ss_pred HHHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 012211111-----------103556330357788765422776542233322333200233333344321025689887
Q gi|254780271|r 144 ADATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQAL 212 (424)
Q Consensus 144 vdaT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~L 212 (424)
T Consensus 555 ~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~-------LTEaVRr~PySViLlDEIEKAHpd--------------V~nil 613 (786)
T COG0542 555 IDMSEYMEKHSVSRLIGAPPGYVGYEEGGQ-------LTEAVRRKPYSVILLDEIEKAHPD--------------VFNLL 613 (786)
T ss_pred ECHHHHHHHHHHHHHHCCCCCCCEECCCCC-------HHHHHHCCCCEEEEECHHHHCCHH--------------HHHHH
T ss_conf 456877778779987279998720065540-------037660699868884126440889--------------99999
Q ss_pred HHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 53105870102565564322243024310001232200046789887641234333211110000000168999641056
Q gi|254780271|r 213 LKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESE 292 (424)
Q Consensus 213 Lkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
T Consensus 614 LQVlDdGr--LTD~~Gr~VdFrNtiIImTSN~-----Gs~-~i~~~--------~-~~-------~~~~~~~~~~~~v-~ 668 (786)
T COG0542 614 LQVLDDGR--LTDGQGRTVDFRNTIIIMTSNA-----GSE-EILRD--------A-DG-------DDFADKEALKEAV-M 668 (786)
T ss_pred HHHHCCCC--EECCCCCEEECCEEEEEEECCC-----CHH-HHHHH--------C-CC-------CCCCHHHHHHHHH-H
T ss_conf 99846780--5548998884300289984502-----659-89753--------1-34-------3210046788999-9
Q ss_pred HHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 77752206898720784267211105789999874267799999999874498999968999999995510678742368
Q gi|254780271|r 293 DLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLR 372 (424)
Q Consensus 293 DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~Lr 372 (424)
T Consensus 669 ~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv----~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~ 744 (786)
T COG0542 669 EELKKHFRPEFLNRIDEIIPFNPLSKEVLERIV----DLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLR 744 (786)
T ss_pred HHHHHHCCHHHHHHCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999853899898512617850679989999999----9999999999986895599888999999996468776736799
Q ss_pred HHHHHHHHHHHHCCCC---CCCCCEEEECHH
Q ss_conf 9999996777402767---898419998377
Q gi|254780271|r 373 SILEKILLDTMFELPM---LKGVSSVIISDD 400 (424)
Q Consensus 373 tIiE~iLedimFe~P~---~~~~~~v~Id~~ 400 (424)
T Consensus 745 R~Iq~~i~~~La~~iL~~~~~~~~~v~v~~~ 775 (786)
T COG0542 745 RAIQQEIEDPLADEILFGKIEDGGTVKVDVD 775 (786)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9999999899999998466579967999951