HHsearch alignment for GI: 254780271 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=93.79 E-value=0.32 Score=29.08 Aligned_cols=128 Identities=26% Similarity=0.290 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHH-CCC-----HHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9878999997420-308-----5999999999998658875212--1013552256835884073321769999999871
Q gi|254780271|r 66 PNPQEILRVLDEY-VIG-----QGQAKKVLAVAVHNHYKRLAHS--SKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 66 ~tP~eI~~~Ld~y-VIG-----Q~~AKkavAvAv~nh~rR~~~~--~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
T Consensus 84 e~~~~i~~~l~~~~~~~~~~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 84 ETAEEIIEELRKREGKKKKIKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999999999875102368988999999999999984655444436552358986799999348886371799999999
Q ss_pred ---CCCEEEHHHHHHHHH------------------HHCCCCCCCHHHHHHHHHHHH---H------HHHHHHHHHHHHH
Q ss_conf ---853131012211111------------------103556330357788765422---7------7654223332233
Q gi|254780271|r 138 ---DVPFTMADATTLTEA------------------GYVGEDVENIILKLLQAADYN---V------ERAQRGIVYIDEV 187 (424)
Q Consensus 138 ---~~PF~~vdaT~~TE~------------------GYvG~Dvesii~~L~~~a~~~---v------~~a~~~iv~iDEi 187 (424)
T Consensus 164 ~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL 243 (340)
T COG0552 164 KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDEL 243 (340)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 97898699982334789999999999999599278259999808999999999997699999996755445736689999
Q ss_pred HHHCCC
Q ss_conf 320023
Q gi|254780271|r 188 DKISRK 193 (424)
Q Consensus 188 dKi~~~ 193 (424)
T Consensus 244 ~KI~rV 249 (340)
T COG0552 244 KKIVRV 249 (340)
T ss_pred HHHHHH
T ss_conf 999998