HHsearch alignment for GI: 254780271 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=753.94 Aligned_cols=297 Identities=43% Similarity=0.680 Sum_probs=269.1
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~q-L~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQ-LEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 8887999999876740717778899999998999975-478776225755358888888768899999999848983788
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH------------------------------------------------
Q ss_conf 12211111103556330357788765422776------------------------------------------------
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVER------------------------------------------------ 176 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~------------------------------------------------ 176 (424)
T Consensus 82 EATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rk 161 (444)
T COG1220 82 EATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRK 161 (444)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 76421340325645899999999999999999999999999999999999998669875546667300002679999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780271|r 177 -------------------------------------------------------------------------------- 176 (424)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (424)
T Consensus 162 kLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~ 241 (444)
T COG1220 162 KLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIK 241 (444)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99758877617999972267875346899857899999999998646887303665699999987777887626999999
Q ss_pred -------HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf -------5422333223332002333333443210256898875310587010256556432224302431000123220
Q gi|254780271|r 177 -------AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICG 249 (424)
Q Consensus 177 -------a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~ 249 (424)
T Consensus 242 ~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T-----------KyG~VkTdHILFIas 308 (444)
T COG1220 242 QEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST-----------KYGPVKTDHILFIAS 308 (444)
T ss_pred HHHHHHHHHCCEEEEEHHHHHHHCCC--CCCCCCCHHHHCCCCCCCCCCCEEEC-----------CCCCCCCCEEEEEEC
T ss_conf 99999988569089734667874378--89988664320102103105754431-----------544401443788714
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 00467898876412343332111100000001689996410567775220689872078426721110578999987426
Q gi|254780271|r 250 GAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPK 329 (424)
Q Consensus 250 gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepk 329 (424)
T Consensus 309 GAFh----------------------------------~s-----KPSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~ 349 (444)
T COG1220 309 GAFH----------------------------------VA-----KPSDLIPELQGRFPIRVELDALTKEDFERILTEPK 349 (444)
T ss_pred CCEE----------------------------------CC-----CHHHCCHHHCCCCCEEEECCCCCHHHHHHHHCCCH
T ss_conf 8200----------------------------------37-----81321766627773488704489989999963760
Q ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCC
Q ss_conf 7799999999874498999968999999995510-----67874236899999967774027678984199983778558
Q gi|254780271|r 330 NALIKQYQCLFDMEDVELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKG 404 (424)
Q Consensus 330 nsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-----~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~ 404 (424)
T Consensus 350 ~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFeA~d~~g-~~v~Id~~yV~~ 428 (444)
T COG1220 350 ASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEAPDMSG-QKVTIDAEYVEE 428 (444)
T ss_pred HHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEECHHHHHH
T ss_conf 7899999999731583488537999999999998554300011788999999999870705877899-758975899999
Q ss_pred CCCEEEEECCC
Q ss_conf 78816872565
Q gi|254780271|r 405 KACPLNVYTDR 415 (424)
Q Consensus 405 ~~~p~~~~~~~ 415 (424)
T Consensus 429 ~l~~l~~n~DL 439 (444)
T COG1220 429 KLGDLVANEDL 439 (444)
T ss_pred HHHHHHCCCCH
T ss_conf 99877517415