HHsearch alignment for GI: 254780271 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=98.62 E-value=1.2e-07 Score=74.18 Aligned_cols=284 Identities=22% Similarity=0.292 Sum_probs=135.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEHHHHHHHHHHHC
Q ss_conf 030859999999999986588752121013552256835884073321769999999871--853131012211111103
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII--DVPFTMADATTLTEAGYV 155 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l--~~PF~~vdaT~~TE~GYv 155 (424)
T Consensus 40 G~VGQ~~AReAaGvIv----~mik~g------k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi----YS 105 (450)
T COG1224 40 GLVGQEEAREAAGVIV----KMIKQG------KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI----YS 105 (450)
T ss_pred CCCCHHHHHHHHHHHH----HHHHHC------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEE----EE
T ss_conf 6112498887625999----999717------666617999789997688999999998589998215013322----33
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------CCCCCCCCCCCCHHHHHH-HH
Q ss_conf 556330-3577887654227765422333223332002---------------------333333443210256898-87
Q gi|254780271|r 156 GEDVEN-IILKLLQAADYNVERAQRGIVYIDEVDKISR---------------------KSDNPSITRDVSGEGVQQ-AL 212 (424)
Q Consensus 156 G~Dves-ii~~L~~~a~~~v~~a~~~iv~iDEidKi~~---------------------~~~~~~~~~dvs~~gvq~-~L 212 (424)
T Consensus 106 ~E~kKTE~L~qa~RraIG-vrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~ 184 (450)
T COG1224 106 LEVKKTEALTQALRRAIG-VRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVK 184 (450)
T ss_pred ECCCHHHHHHHHHHHHHC-EEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHH
T ss_conf 100088999999998645-4864666888778999987623579987665545328999963664576259899999998
Q ss_pred HHHCCCCEEECCCCCCC-----------------------------CCCCCCEEE------EECC-----HHHHHHHCCH
Q ss_conf 53105870102565564-----------------------------322243024------3100-----0123220004
Q gi|254780271|r 213 LKIMEGTIASVPPQGGR-----------------------------KHPQQEFLQ------VDTT-----NILFICGGAF 252 (424)
Q Consensus 213 Lkileg~~~~v~~~~gr-----------------------------k~~~~~~~~------Idt~-----nilfi~~gaf 252 (424)
T Consensus 185 ~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~ 264 (450)
T COG1224 185 EGVEEGDVIYIDAETGRVKKLGRSKARAREDFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGT 264 (450)
T ss_pred HCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCC
T ss_conf 37445878999825667999422423354223344217987798852566778999870031343204111375652776
Q ss_pred HHHHHHHHHHCCCCCCCCCCCC------------CCC-CCCCHHHHHHHHHHHHH---------------------HHHC
Q ss_conf 6789887641234333211110------------000-00016899964105677---------------------7522
Q gi|254780271|r 253 AGLDRIISARGEKASIGFSAVV------------KDS-DNRPVGEVLRNLESEDL---------------------VKFG 298 (424)
Q Consensus 253 ~~l~~i~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~DL---------------------~~~g 298 (424)
T Consensus 265 ~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhG 344 (450)
T COG1224 265 GEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHG 344 (450)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCC
T ss_conf 65788999999999999985495786134289732134557899999987631467579997177500121667768888
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 06898720784267211105789999874267799999999874498999968999999995510678742368999999
Q gi|254780271|r 299 LIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKI 378 (424)
Q Consensus 299 liPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~i 378 (424)
T Consensus 345 IP~DlLDRllII-~t~py~~~EireIi~i-----------Ra~e--e~i~l~~~Ale~L~~ig~e-----tSLRYa~q-- 403 (450)
T COG1224 345 IPLDLLDRLLII-STRPYSREEIREIIRI-----------RAKE--EDIELSDDALEYLTDIGEE-----TSLRYAVQ-- 403 (450)
T ss_pred CCHHHHHHEEEE-ECCCCCHHHHHHHHHH-----------HHHH--HCCCCCHHHHHHHHHHCHH-----HHHHHHHH--
T ss_conf 987666225677-4477988999999997-----------6435--4030488899999751503-----44899998--
Q ss_pred HHHHHHCCCCCCCCCEEEE
Q ss_conf 6777402767898419998
Q gi|254780271|r 379 LLDTMFELPMLKGVSSVII 397 (424)
Q Consensus 379 LedimFe~P~~~~~~~v~I 397 (424)
T Consensus 404 LL~pa~iiA~~rg~~~V~~ 422 (450)
T COG1224 404 LLTPASIIAKRRGSKRVEV 422 (450)
T ss_pred HCCHHHHHHHHHCCCEEEH
T ss_conf 6168889998717974656