HHsearch alignment for GI: 254780271 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=98.82 E-value=6.3e-08 Score=76.07 Aligned_cols=201 Identities=19% Similarity=0.326 Sum_probs=127.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871---853131012211111----103556330357788765422776542233322
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYID 185 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD 185 (424)
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAF-TGA~~~r~G~fE~A~GGTLfLD 242 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAF-TGAITRRIGRFEQANGGTLFLD 242 (464)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCEEECCCCEEEEE
T ss_conf 997899778987589999999860744589925633464898887777614565676-7764345761577379658732
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 33320023333334432102568988753105870102565564322243024310001232200046789887641234
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEK 265 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~ 265 (424)
T Consensus 243 EI~~mpl~--------------~Q~kLLRvLqe~~--~~rvG~~~~i~vdvRiIaaT~~---------dL---------- 287 (464)
T COG2204 243 EIGEMPLE--------------LQVKLLRVLQERE--FERVGGNKPIKVDVRIIAATNR---------DL---------- 287 (464)
T ss_pred CCCCCCHH--------------HHHHHHHHHHCCE--EEECCCCCEECEEEEEEEECCC---------CH----------
T ss_conf 31109999--------------9999999987070--6735888600001699960577---------89----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 333211110000000168999641056777522068987207842-67211105--789999874267799999999874
Q gi|254780271|r 266 ASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLFDM 342 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll~~ 342 (424)
T Consensus 288 -----------------~~~v~~G--------~FReDLyyRLnV~~i~iPpLRER~EDIp~L~----~hfl~~~~~~~~- 337 (464)
T COG2204 288 -----------------EEEVAAG--------RFREDLYYRLNVVPLRLPPLRERKEDIPLLA----EHFLKRFAAELG- 337 (464)
T ss_pred -----------------HHHHHCC--------CCHHHHHHHHCCCEECCCCCCCCCHHHHHHH----HHHHHHHHHHHC-
T ss_conf -----------------9998819--------7378888652331104876223620079999----999999999809-
Q ss_pred CCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 4989999689999999955106787423689999996777
Q gi|254780271|r 343 EDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 343 egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
T Consensus 338 -~~~~~~s~~a~~~L~~y~WPGNV--REL~N~ver~~il~ 374 (464)
T COG2204 338 -RPPKGFSPEALAALLAYDWPGNV--RELENVVERAVILS 374 (464)
T ss_pred -CCCCCCCHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCC
T ss_conf -99888799999999738998189--99999999998517