HHsearch alignment for GI: 254780271 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.20 E-value=1.9e-10 Score=93.68 Aligned_cols=207 Identities=27% Similarity=0.414 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
T Consensus 19 ~lRP~~----l~ef-iGQ~~vk~~L~ifI~AAk~r~----e------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t 83 (332)
T COG2255 19 SLRPKT----LDEF-IGQEKVKEQLQIFIKAAKKRG----E------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT 83 (332)
T ss_pred CCCCCC----HHHH-CCHHHHHHHHHHHHHHHHHCC----C------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 358654----8885-183999999999999998449----8------767478647998768889999999856773763
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 12211111103556330357788765422776542233322333200233333344321025689887531058701025
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVP 224 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~ 224 (424)
T Consensus 84 sGp~leK~g-----------DlaaiLt~---Le~~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~ 135 (332)
T COG2255 84 SGPALEKPG-----------DLAAILTN---LEEGDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDII 135 (332)
T ss_pred CCCCCCCHH-----------HHHHHHHC---CCCCCEEEEEHHHHCCHH--------------HHHHHHHHHHHEEEEEE
T ss_conf 662015726-----------59999863---986776777255314742--------------89896467531057789
Q ss_pred CCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHH-HHH
Q ss_conf 6556432224302431000123220004678988764123433321111000000016899964105677752206-898
Q gi|254780271|r 225 PQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI-PEF 303 (424)
Q Consensus 225 ~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gli-PEl 303 (424)
T Consensus 136 IG~g---p~Arsv~ldLpp--FTLIGAT---------------------T---------------------r~G~lt~PL 168 (332)
T COG2255 136 IGKG---PAARSIRLDLPP--FTLIGAT---------------------T---------------------RAGMLTNPL 168 (332)
T ss_pred ECCC---CCCCEEECCCCC--EEEEEEC---------------------C---------------------CCCCCCCHH
T ss_conf 7248---755347637998--1375101---------------------3---------------------466456336
Q ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCCCCHHHHHH
Q ss_conf 720784267211105789999874267799999999874498999968999999995510-67874236899
Q gi|254780271|r 304 IGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKTGARGLRSI 374 (424)
Q Consensus 304 ~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~niGAR~LrtI 374 (424)
T Consensus 169 rdRFGi~~rlefY~~~eL~~Iv~--------r~a~~l-----~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 169 RDRFGIIQRLEFYTVEELEEIVK--------RSAKIL-----GIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred HHHCCCEEEEECCCHHHHHHHHH--------HHHHHH-----CCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88628604540588899999999--------888873-----877685799999986369938999999999