HHsearch alignment for GI: 254780271 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.09 E-value=1.7e-09 Score=87.02 Aligned_cols=170 Identities=25% Similarity=0.355 Sum_probs=111.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 68358840733217699999998718531310122111111035563303577887654227765422333223332002
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISR 192 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~ 192 (424)
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvk---------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVK---------DLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHH---------HHHHHHHHHHHHHHCCCCEEEEEEHHHHCCH
T ss_conf 8605777899988889999998761776699515234679---------9999999999987258834998722533374
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33333344321025689887531058701025655643222430243100012322000467898876412343332111
Q gi|254780271|r 193 KSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSA 272 (424)
Q Consensus 193 ~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~ 272 (424)
T Consensus 119 ~--------------QQD~lLp~vE~G~iil-------------IGATTENPsF~l------------------------ 147 (436)
T COG2256 119 A--------------QQDALLPHVENGTIIL-------------IGATTENPSFEL------------------------ 147 (436)
T ss_pred H--------------HHHHHHHHHCCCEEEE-------------EECCCCCCCEEE------------------------
T ss_conf 4--------------5655103324886899-------------962678987140------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 10000000168999641056777522068987207842672111057899998742677999999998744989999689
Q gi|254780271|r 273 VVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHED 352 (424)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~Ftde 352 (424)
T Consensus 148 ---------------------------n~ALlSR~~-vf~lk~L~~~di~~~l~r---a~~~~---~rgl~~~~~~i~~~ 193 (436)
T COG2256 148 ---------------------------NPALLSRAR-VFELKPLSSEDIKKLLKR---ALLDE---ERGLGGQIIVLDEE 193 (436)
T ss_pred ---------------------------CHHHHHHHH-EEEEECCCHHHHHHHHHH---HHHHH---HCCCCCCCCCCCHH
T ss_conf ---------------------------388861104-156516998999999999---98654---13777655668889
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999955106787423689999996
Q gi|254780271|r 353 ALREIARCAIAHKTGARGLRSILEKIL 379 (424)
Q Consensus 353 Ai~~IA~~A~~~niGAR~LrtIiE~iL 379 (424)
T Consensus 194 a~~~l~~~s~---GD~R~aLN~LE~~~ 217 (436)
T COG2256 194 ALDYLVRLSN---GDARRALNLLELAA 217 (436)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHH
T ss_conf 9999998628---61999988999999