HHsearch alignment for GI: 254780271 and conserved domain: COG3284
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].
Probab=98.16 E-value=1.7e-05 Score=59.10 Aligned_cols=191 Identities=25% Similarity=0.426 Sum_probs=118.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH--HCCCEEEHHHHHHHHH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 683588407332176999999987--1853131012211111-------1035563303577887654227765422333
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARI--IDVPFTMADATTLTEA-------GYVGEDVENIILKLLQAADYNVERAQRGIVY 183 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~--l~~PF~~vdaT~~TE~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~ 183 (424)
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~---~g~~~~A~gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGY---KGKLEQADGGTLF 412 (606)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCC---CCCCEECCCCCCH
T ss_conf 7876853876556899999998536556983799850344776467774457656433001066---5541015787608
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 22333200233333344321025689887531058701025655643222430243100012322000467898876412
Q gi|254780271|r 184 IDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARG 263 (424)
Q Consensus 184 iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~ 263 (424)
T Consensus 413 ldeIgd~p~--------------~~Qs~LLrVl~e~--~v~p~g~~~-~~vdirvi~ath~---------dl~~lv---- 462 (606)
T COG3284 413 LDEIGDMPL--------------ALQSRLLRVLQEG--VVTPLGGTR-IKVDIRVIAATHR---------DLAQLV---- 462 (606)
T ss_pred HHHHHHCHH--------------HHHHHHHHHHHHC--CEECCCCCC-EEEEEEEEECCCC---------CHHHHH----
T ss_conf 987611418--------------9999999998618--252358852-1577999834675---------799998----
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 343332111100000001689996410567775220689872078-4267211105-78999987426779999999987
Q gi|254780271|r 264 EKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP-VLATLEDLDE-NSLIRILSEPKNALIKQYQCLFD 341 (424)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP-iiV~L~~Lt~-edl~rILtepknsLikQy~~Ll~ 341 (424)
T Consensus 463 -----------------------~~g~--------fredLyyrL~~~~i~lP~lr~R~d~~~~l----~~~~~~~~---- 503 (606)
T COG3284 463 -----------------------EQGR--------FREDLYYRLNAFVITLPPLRERSDRIPLL----DRILKREN---- 503 (606)
T ss_pred -----------------------HCCC--------CHHHHHHHHCCEEECCCCHHCCCCCHHHH----HHHHHHCC----
T ss_conf -----------------------7597--------14878887447155068611046657899----99998726----
Q ss_pred HCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 44989999689999999955106787423689999996
Q gi|254780271|r 342 MEDVELVFHEDALREIARCAIAHKTGARGLRSILEKIL 379 (424)
Q Consensus 342 ~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iL 379 (424)
T Consensus 504 --~~~~~l~~~~~~~l~~~~WPGNi--rel~~v~~~~~ 537 (606)
T COG3284 504 --DWRLQLDDDALARLLAYRWPGNI--RELDNVIERLA 537 (606)
T ss_pred --CCCCCCCHHHHHHHHHCCCCCCH--HHHHHHHHHHH
T ss_conf --87756899999999857899828--99999999998