HHsearch alignment for GI: 254780271 and conserved domain: KOG2004
>KOG2004 consensus.
Probab=99.33 E-value=1.5e-11 Score=101.42 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=120.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH--------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 835884073321769999999871853131012211111--------103556330357788765422776542233322
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA--------GYVGEDVENIILKLLQAADYNVERAQRGIVYID 185 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~--------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD 185 (424)
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v------~t~NPliLiD 512 (906)
T KOG2004 439 KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV------KTENPLILID 512 (906)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEECCCCHHHHHHHHHH------CCCCCEEEEE
T ss_conf 3799868998773218999999848746998536634277642542110014884899999861------7788658853
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 33320023333334432102568988753105870102565564322243024310001232200046789887641234
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEK 265 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~ 265 (424)
T Consensus 513 EvDKlG~g-----~qGDPa-----sALLElLDPEQ------NanFlDHYLdVp~DLSkVLFicTAN~i--dtI------- 567 (906)
T KOG2004 513 EVDKLGSG-----HQGDPA-----SALLELLDPEQ------NANFLDHYLDVPVDLSKVLFICTANVI--DTI------- 567 (906)
T ss_pred HHHHHCCC-----CCCCHH-----HHHHHHCCHHH------CCCHHHHCCCCCCCHHHEEEEEECCCC--CCC-------
T ss_conf 22341788-----779868-----99987439653------553454202664211106889853644--569-------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 33321111000000016899964105677752206898720784267211105789999874267799999999874498
Q gi|254780271|r 266 ASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDV 345 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV 345 (424)
T Consensus 568 ------------------------------P----~pLlDRMEv-IelsGYv~eEKv~IA---~~yLip~a~~~~gl~~e 609 (906)
T KOG2004 568 ------------------------------P----PPLLDRMEV-IELSGYVAEEKVKIA---ERYLIPQALKDCGLKPE 609 (906)
T ss_pred ------------------------------C----HHHHHHHHE-EECCCCCHHHHHHHH---HHHHHHHHHHHCCCCHH
T ss_conf ------------------------------8----566412232-203672279899999---98412578987499878
Q ss_pred EEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99996899999999551067874236899999967774027
Q gi|254780271|r 346 ELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFEL 386 (424)
Q Consensus 346 ~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~ 386 (424)
T Consensus 610 ~v~is~~al~~lI~-~YcrEaGVRnLqk~iekI~Rk~Al~v 649 (906)
T KOG2004 610 QVKISDDALLALIE-RYCREAGVRNLQKQIEKICRKVALKV 649 (906)
T ss_pred HCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65862999999999-99888767789999999999999999