HHsearch alignment for GI: 254780271 and conserved domain: PRK00080

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.43  E-value=1.8e-12  Score=107.89  Aligned_cols=210  Identities=27%  Similarity=0.401  Sum_probs=140.5

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             26998789999974203085999999999998658875212101355225683588407332176999999987185313
Q gi|254780271|r   63 EGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT  142 (424)
Q Consensus        63 ~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~  142 (424)
T Consensus        16 ~~~lRP~~l----~ef-iGQ~~i~~~L~v~i~Aak~r~----e------~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~   80 (328)
T PRK00080         16 ERSLRPKSL----DEF-IGQEKVKENLKIFIEAAKKRG----E------ALDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCCCCCCH----HHC-CCHHHHHHHHHHHHHHHHHCC----C------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf             005598857----663-595999999999999999649----9------9880576588998899999999998688815


Q ss_pred             EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             10122111111035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r  143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS  222 (424)
Q Consensus       143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~  222 (424)
T Consensus        81 ~tsGP~lek~~-----------DL~~iLt---~l~~~dvLFIDEIHRl~~~--------------vEE~LY~AMEDf~iD  132 (328)
T PRK00080         81 ITSGPALEKAG-----------DLAALLT---NLEEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLD  132 (328)
T ss_pred             ECCCCCCCCHH-----------HHHHHHH---HCCCCCEEEEHHHHHCCHH--------------HHHHHHHHHHHCEEE
T ss_conf             62450016747-----------8999996---0887876765065324888--------------998857987752345


Q ss_pred             CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-HHH
Q ss_conf             2565564322243024310001232200046789887641234333211110000000168999641056777522-068
Q gi|254780271|r  223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFG-LIP  301 (424)
Q Consensus       223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~g-liP  301 (424)
T Consensus       133 i~iG~g---~~Ar~~~i~L~p--FTLIGAT---------------------T---------------------r~g~Ls~  165 (328)
T PRK00080        133 IMIGKG---PAARSIRLDLPP--FTLIGAT---------------------T---------------------RAGLLTS  165 (328)
T ss_pred             EEECCC---CCCEEEECCCCC--EEEEECC---------------------C---------------------CCCCCCH
T ss_conf             786478---653245558998--3474013---------------------6---------------------7665776


Q ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf             98720784267211105789999874267799999999874498999968999999995510-678742368999
Q gi|254780271|r  302 EFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKTGARGLRSIL  375 (424)
Q Consensus       302 El~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~niGAR~LrtIi  375 (424)
T Consensus       166 PLrdRFGi~~~l~~Y~~eeL~~Ii~r--------sa~~l-----~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvr  227 (328)
T PRK00080        166 PLRDRFGIVQRLEFYTVEELEKIVKR--------SARIL-----GIEIDEEGALEIARRSRGTPRIANRLLRRVR  227 (328)
T ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHH--------HHHHH-----CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             78975793366345899999999999--------99983-----9887899999999863898399999999999