HHsearch alignment for GI: 254780271 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.43 E-value=1.8e-12 Score=107.89 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=140.5
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 26998789999974203085999999999998658875212101355225683588407332176999999987185313
Q gi|254780271|r 63 EGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 63 ~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
T Consensus 16 ~~~lRP~~l----~ef-iGQ~~i~~~L~v~i~Aak~r~----e------~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~ 80 (328)
T PRK00080 16 ERSLRPKSL----DEF-IGQEKVKENLKIFIEAAKKRG----E------ALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCCCCCH----HHC-CCHHHHHHHHHHHHHHHHHCC----C------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 005598857----663-595999999999999999649----9------9880576588998899999999998688815
Q ss_pred EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 10122111111035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
T Consensus 81 ~tsGP~lek~~-----------DL~~iLt---~l~~~dvLFIDEIHRl~~~--------------vEE~LY~AMEDf~iD 132 (328)
T PRK00080 81 ITSGPALEKAG-----------DLAALLT---NLEEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLD 132 (328)
T ss_pred ECCCCCCCCHH-----------HHHHHHH---HCCCCCEEEEHHHHHCCHH--------------HHHHHHHHHHHCEEE
T ss_conf 62450016747-----------8999996---0887876765065324888--------------998857987752345
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-HHH
Q ss_conf 2565564322243024310001232200046789887641234333211110000000168999641056777522-068
Q gi|254780271|r 223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFG-LIP 301 (424)
Q Consensus 223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~g-liP 301 (424)
T Consensus 133 i~iG~g---~~Ar~~~i~L~p--FTLIGAT---------------------T---------------------r~g~Ls~ 165 (328)
T PRK00080 133 IMIGKG---PAARSIRLDLPP--FTLIGAT---------------------T---------------------RAGLLTS 165 (328)
T ss_pred EEECCC---CCCEEEECCCCC--EEEEECC---------------------C---------------------CCCCCCH
T ss_conf 786478---653245558998--3474013---------------------6---------------------7665776
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 98720784267211105789999874267799999999874498999968999999995510-678742368999
Q gi|254780271|r 302 EFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKTGARGLRSIL 375 (424)
Q Consensus 302 El~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~niGAR~LrtIi 375 (424)
T Consensus 166 PLrdRFGi~~~l~~Y~~eeL~~Ii~r--------sa~~l-----~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvr 227 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKR--------SARIL-----GIEIDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHH--------HHHHH-----CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 78975793366345899999999999--------99983-----9887899999999863898399999999999