HHsearch alignment for GI: 254780271 and conserved domain: PRK00440

Probab=99.13  E-value=5.5e-10  Score=90.49  Aligned_cols=103  Identities=33%  Similarity=0.439  Sum_probs=66.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-----EEEHHHHHHHHHH
Q ss_conf             30859999999999986588752121013552256835884073321769999999871853-----1310122111111
Q gi|254780271|r   79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-----FTMADATTLTEAG  153 (424)
Q Consensus        79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-----F~~vdaT~~TE~G  153 (424)
T Consensus        18 i~g~~~~~~~L~~~i~~------------~-~--~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r---   79 (318)
T PRK00440         18 VVGQEEIVERLKSFVKE------------K-N--MPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER---   79 (318)
T ss_pred             HCCCHHHHHHHHHHHHC------------C-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC---
T ss_conf             41969999999999987------------9-9--8669888959988999999999997698643476895164566---


Q ss_pred             HCCCCCCCHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             0355633035778876-54-22776542233322333200233333344321025689887531058
Q gi|254780271|r  154 YVGEDVENIILKLLQA-AD-YNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG  218 (424)
Q Consensus       154 YvG~Dvesii~~L~~~-a~-~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg  218 (424)
T Consensus        80 --~id---~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~--------------aq~aL~~~mE~  127 (318)
T PRK00440         80 --GID---VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEM  127 (318)
T ss_pred             --CHH---HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH--------------HHHHHHHHHHC
T ss_conf             --717---8999999999726778997389998685532255--------------67888764310