HHsearch alignment for GI: 254780271 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.10 E-value=6.4e-05 Score=55.02 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=101.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHH---CCCEEEHHHH
Q ss_conf 9997420308599999999999865887521210135522568358-84073321769999999871---8531310122
Q gi|254780271|r 72 LRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLARII---DVPFTMADAT 147 (424)
Q Consensus 72 ~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NIL-liGPTGvGKTelAr~LAk~l---~~PF~~vdaT 147 (424)
T Consensus 15 ~~tfdnFi~g~N~~a--~~~~-----~~l~~~--~~~---~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~ 82 (234)
T PRK05642 15 DATFANYYPGANAAA--LGYV-----ERLCEA--DAG---WTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCHHCCCCCCCHHH--HHHH-----HHHHHC--CCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 777303571875999--9999-----998760--678---7788389988999988999999999998079967997899
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 11111103556330357788765422776542233322333200233333344321025689887531058701025655
Q gi|254780271|r 148 TLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQG 227 (424)
Q Consensus 148 ~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~ 227 (424)
T Consensus 83 ~~~~~~-----~~-~~-~~---------l~~~d~l~IDDi~~i~g~~------------~~e~~lF~l~N~~~~------ 128 (234)
T PRK05642 83 ELLDRG-----PE-LL-DN---------LEQYELVCIDDLDVIAGKA------------DWEEALFHLFNRLRD------ 128 (234)
T ss_pred HHHHHH-----HH-HH-HH---------HHHCCEEEEECHHHHCCCH------------HHHHHHHHHHHHHHH------
T ss_conf 987544-----99-98-62---------4227989893645546885------------999999999999998------
Q ss_pred CCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC
Q ss_conf 64322243024310001232200046789887641234333211110000000168999641056777522068987207
Q gi|254780271|r 228 GRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL 307 (424)
Q Consensus 228 grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl 307 (424)
T Consensus 129 ------~~~~llits~~---------------------------------------------~P~~l~--~~l~DL~SRl 155 (234)
T PRK05642 129 ------SGRRLLLAASK---------------------------------------------SPRELP--VKLPDLKSRL 155 (234)
T ss_pred ------CCCEEEEECCC---------------------------------------------CHHHHC--CCHHHHHHHH
T ss_conf ------39959995787---------------------------------------------955523--0016799999
Q ss_pred C--CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 8--4267211105789999874267799999999874498999968999999995510678742368999999
Q gi|254780271|r 308 P--VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKI 378 (424)
Q Consensus 308 P--iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~i 378 (424)
T Consensus 156 ~~~~~~~i~~l~d~~~~~iL~~-----------~a~~rg--i~l~~~v~~yl~~r~~---R~~~~L~~~l~~L 212 (234)
T PRK05642 156 TLALVFQMRGLSDEDKLRALQL-----------RASRRG--LHLTDEVGHFILTRGT---RSMSALFDLLERL 212 (234)
T ss_pred HCCCEEEECCCCHHHHHHHHHH-----------HHHHCC--CCCCHHHHHHHHHHCC---CCHHHHHHHHHHH
T ss_conf 5781275148998999999999-----------977546--8999899999999735---8899999999999