HHsearch alignment for GI: 254780271 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=97.66 E-value=0.0012 Score=46.14 Aligned_cols=191 Identities=14% Similarity=0.203 Sum_probs=101.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHH
Q ss_conf 99742030859999999999986588752121013552256835884073321769999999871---853131012211
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTL 149 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~ 149 (424)
T Consensus 13 ~tfdnF~~~~n~~---~~~~l~~~~~~-----~~------~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~ 78 (229)
T PRK06893 13 ETLDNFYSDNNLL---LLDSLRKNFID-----LK------QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCHHCCCCCCHHH---HHHHHHHHCCC-----CC------CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 6543154687499---99999975502-----46------9879998999998899999999999971898599973775
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 11110355633035778876542277654223332233320023333334432102568988753105870102565564
Q gi|254780271|r 150 TEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGR 229 (424)
Q Consensus 150 TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~gr 229 (424)
T Consensus 79 ~---~~~~---~~l~~l----------~~~d~l~iDDi~~i~g~~------------~~e~~lF~l~N~l~----~---- 122 (229)
T PRK06893 79 Q---YFSP---AVLENL----------EQQDLVCLDDLQAVIGNE------------EWELAIFDLFNRIK----E---- 122 (229)
T ss_pred H---HCCH---HHHHHH----------HHCCEEEEECHHHHCCCH------------HHHHHHHHHHHHHH----H----
T ss_conf 6---4069---999876----------547979996723424883------------89999999999999----7----
Q ss_pred CCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-
Q ss_conf 3222430243100012322000467898876412343332111100000001689996410567775220689872078-
Q gi|254780271|r 230 KHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP- 308 (424)
Q Consensus 230 k~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP- 308 (424)
T Consensus 123 ---~~~~~ll~ss~~---------------------------------------------~p~~l~--~~l~DL~SRl~~ 152 (229)
T PRK06893 123 ---SGKTLLLISANQ---------------------------------------------SPHALQ--IKLPDLASRLTW 152 (229)
T ss_pred ---CCCCEEEEECCC---------------------------------------------CHHHHC--CHHHHHHHHHHC
T ss_conf ---599179985798---------------------------------------------833221--002679999968
Q ss_pred -CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf -42672111057899998742677999999998744989999689999999955106787423689999996
Q gi|254780271|r 309 -VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKIL 379 (424)
Q Consensus 309 -iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iL 379 (424)
T Consensus 153 ~~~~~i~~~dd~~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~r~~R---~~~~l~~~l~~Ld 208 (229)
T PRK06893 153 GEIYQLNDLTDEQKIEVLQ-----------RNAYQRGI--ELSDETANFLLKRLDR---DMHTLFDALDLLD 208 (229)
T ss_pred CEEEEECCCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHHCC---CHHHHHHHHHHHH
T ss_conf 8369966777579999999-----------99996499--9998999999998347---8999999999999