HHsearch alignment for GI: 254780271 and conserved domain: PRK06893

>PRK06893 DNA replication initiation factor; Validated.
Probab=97.66  E-value=0.0012  Score=46.14  Aligned_cols=191  Identities=14%  Similarity=0.203  Sum_probs=101.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHH
Q ss_conf             99742030859999999999986588752121013552256835884073321769999999871---853131012211
Q gi|254780271|r   73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTL  149 (424)
Q Consensus        73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~  149 (424)
T Consensus        13 ~tfdnF~~~~n~~---~~~~l~~~~~~-----~~------~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~   78 (229)
T PRK06893         13 ETLDNFYSDNNLL---LLDSLRKNFID-----LK------QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS   78 (229)
T ss_pred             CCHHCCCCCCHHH---HHHHHHHHCCC-----CC------CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf             6543154687499---99999975502-----46------9879998999998899999999999971898599973775


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             11110355633035778876542277654223332233320023333334432102568988753105870102565564
Q gi|254780271|r  150 TEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGR  229 (424)
Q Consensus       150 TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~gr  229 (424)
T Consensus        79 ~---~~~~---~~l~~l----------~~~d~l~iDDi~~i~g~~------------~~e~~lF~l~N~l~----~----  122 (229)
T PRK06893         79 Q---YFSP---AVLENL----------EQQDLVCLDDLQAVIGNE------------EWELAIFDLFNRIK----E----  122 (229)
T ss_pred             H---HCCH---HHHHHH----------HHCCEEEEECHHHHCCCH------------HHHHHHHHHHHHHH----H----
T ss_conf             6---4069---999876----------547979996723424883------------89999999999999----7----


Q ss_pred             CCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-
Q ss_conf             3222430243100012322000467898876412343332111100000001689996410567775220689872078-
Q gi|254780271|r  230 KHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP-  308 (424)
Q Consensus       230 k~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP-  308 (424)
T Consensus       123 ---~~~~~ll~ss~~---------------------------------------------~p~~l~--~~l~DL~SRl~~  152 (229)
T PRK06893        123 ---SGKTLLLISANQ---------------------------------------------SPHALQ--IKLPDLASRLTW  152 (229)
T ss_pred             ---CCCCEEEEECCC---------------------------------------------CHHHHC--CHHHHHHHHHHC
T ss_conf             ---599179985798---------------------------------------------833221--002679999968


Q ss_pred             -CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             -42672111057899998742677999999998744989999689999999955106787423689999996
Q gi|254780271|r  309 -VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKIL  379 (424)
Q Consensus       309 -iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iL  379 (424)
T Consensus       153 ~~~~~i~~~dd~~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~r~~R---~~~~l~~~l~~Ld  208 (229)
T PRK06893        153 GEIYQLNDLTDEQKIEVLQ-----------RNAYQRGI--ELSDETANFLLKRLDR---DMHTLFDALDLLD  208 (229)
T ss_pred             CEEEEECCCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHHCC---CHHHHHHHHHHHH
T ss_conf             8369966777579999999-----------99996499--9998999999998347---8999999999999