HHsearch alignment for GI: 254780271 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=98.72 E-value=1.2e-07 Score=74.14 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-------EEEHHHHHHH
Q ss_conf 308-59999999999986588752121013552256835884073321769999999871853-------1310122111
Q gi|254780271|r 79 VIG-QGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-------FTMADATTLT 150 (424)
Q Consensus 79 VIG-Q~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-------F~~vdaT~~T 150 (424)
T Consensus 7 ~~~~Q~~i~~~L~~~i~~~-----------r---l~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~ 72 (329)
T PRK08058 7 LTALQPIVVKMLQNSIAKN-----------R---LAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHHHHHHHHHHHHHCC-----------C---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 8831899999999999859-----------9---6615655789998899999999999739999999988788899998
Q ss_pred HHH------HCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 111------03556-----3303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAG------YVGED-----VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~G------YvG~D-----vesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
T Consensus 73 ~~~~HPD~~~i~p~~~~i~idq-iR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~--------------AaNALLKtLEEP 137 (329)
T PRK08058 73 ESGNHPDVHLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTAS--------------AANSLLKFLEEP 137 (329)
T ss_pred HCCCCCCEEEECCCCCCCCHHH-HHHHHHHHCCCCCCCCCEEEEEECHHHHCHH--------------HHHHHHHHHHCC
T ss_conf 7699997677456614077999-9999999643875788679997347762999--------------999999986468