HHsearch alignment for GI: 254780271 and conserved domain: PRK08116

>PRK08116 hypothetical protein; Validated.
Probab=98.40  E-value=4.9e-06  Score=62.84  Aligned_cols=190  Identities=23%  Similarity=0.357  Sum_probs=92.9

Q ss_pred             CCEEEECCCCCCHHHHHCCCCCCC---CEECH-HHHH-HHHHHHHHHHHHHCCHH----C-CCCCCHHHHHHHHHHHCC-
Q ss_conf             672561689888657422113899---13431-7999-99999898742100000----0-269987899999742030-
Q gi|254780271|r   12 KNALYCSFCGKSQHEVRKLIAGPT---VFICD-ECVE-LCMDIIREENKSSITKS----H-EGIPNPQEILRVLDEYVI-   80 (424)
Q Consensus        12 ~~~~~CsfCg~~~~~v~~li~g~~---~~iC~-~Ci~-~~~~i~~~e~~~~~~~~----~-~~~~tP~eI~~~Ld~yVI-   80 (424)
T Consensus         5 ~~~~~c~~Cg~~~~~~~~~~~~~g~~~~~~~~C~C~~~~~~~~~~~~~~~~~q~ri~rl~~~s~i~~~f~~~tFeN~~~~   84 (262)
T PRK08116          5 EEGYYCEVCGKCIEAITVEVPQLGRKRKIPPMCECKREREEAKIEEEENKEKQLRLERLISNSLLDEKFRNSTFENWLFR   84 (262)
T ss_pred             CCCEECCCCCCCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
T ss_conf             48814788898689738986356466457978878399999999999999999999999986599988981922255689


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHH---HH
Q ss_conf             -859999999999986588752121013552256835884073321769999999871---85313101221111---11
Q gi|254780271|r   81 -GQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTE---AG  153 (424)
Q Consensus        81 -GQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE---~G  153 (424)
T Consensus        85 ~~~~~a~~-~a~~Y~~~f~~~~------~---~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~  154 (262)
T PRK08116         85 KGSEKAYK-VAVKYVKKFEEMK------K---ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKST  154 (262)
T ss_pred             CCHHHHHH-HHHHHHHHHHHHC------C---CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_conf             52599999-9999999898736------4---686189989899989999999999999879939998899999999999


Q ss_pred             HCCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf             0355--633-0357788765422776542233322333200233333344321025689887531058701025655643
Q gi|254780271|r  154 YVGE--DVE-NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRK  230 (424)
Q Consensus       154 YvG~--Dve-sii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk  230 (424)
T Consensus       155 ~~~~~~~~~~e~l~~l~----------~~dLLIiDDlG~e------------~~t~w~~e~lf~IIn~Ry~~--------  204 (262)
T PRK08116        155 YNSEGKEDENEIIRALD----------NADLLILDDLGAE------------KDTEWVREKLYNIIDSRYRK--------  204 (262)
T ss_pred             HHCCCCHHHHHHHHHHH----------CCCEEEEEHHCCC------------CCCHHHHHHHHHHHHHHHHC--------
T ss_conf             86356101999999861----------2998998322145------------69878999999999999976--------


Q ss_pred             CCCCCEEEEECCHHH
Q ss_conf             222430243100012
Q gi|254780271|r  231 HPQQEFLQVDTTNIL  245 (424)
Q Consensus       231 ~~~~~~~~Idt~nil  245 (424)
T Consensus       205 ----~kptIiTTNl~  215 (262)
T PRK08116        205 ----GLPTIFTTNLS  215 (262)
T ss_pred             ----CCCEEEECCCC
T ss_conf             ----99989987999