HHsearch alignment for GI: 254780271 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=96.85 E-value=0.0058 Score=41.34 Aligned_cols=167 Identities=18% Similarity=0.315 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHCCHHCCCCCCHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 99998987421000000269987899999-74203085999999999998658875212101355225683588407332
Q gi|254780271|r 46 CMDIIREENKSSITKSHEGIPNPQEILRV-LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGC 124 (424)
Q Consensus 46 ~~~i~~~e~~~~~~~~~~~~~tP~eI~~~-Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGv 124 (424)
T Consensus 97 c~~~~~~~~~~~~~~~i~s~~mpk~i~~as~~d~~~~d~~R~~a~~~a~--~F~~~y-~~---~--~~~kGlyl~G~~G~ 168 (306)
T PRK08939 97 TPEKIEADEERAIEERIQSIYMPKDLLQATLADIDLDDLDRLDALMAAL--DFLEAY-KP---G--EKVKGLYLYGDFGV 168 (306)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHHHHH--HHHHHH-CC---C--CCCCEEEEECCCCC
T ss_conf 8999999999999998776357799980989864889778999999999--999973-76---9--88877889899999
Q ss_pred CHHHHHHHHHHHH---CCCEEEHHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1769999999871---853131012211111---1035563303577887654227765422333223332002333333
Q gi|254780271|r 125 GKTYLAQTLARII---DVPFTMADATTLTEA---GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPS 198 (424)
Q Consensus 125 GKTelAr~LAk~l---~~PF~~vdaT~~TE~---GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~ 198 (424)
T Consensus 169 GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s~-~d~--s-~~~~i~~----~k--~~~vLiLDDiGa--------- 229 (306)
T PRK08939 169 GKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNAI-SDG--S-VKEKIDA----VK--EAPVLMLDDIGA--------- 229 (306)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH-CCC--C-HHHHHHH----HH--CCCEEEEECCCC---------
T ss_conf 899999999999998699299987599999999986-489--8-8999999----84--499899844465---------
Q ss_pred CCCCCCHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHH
Q ss_conf 443210256898875-31058701025655643222430243100012322000467898876
Q gi|254780271|r 199 ITRDVSGEGVQQALL-KIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIS 260 (424)
Q Consensus 199 ~~~dvs~~gvq~~LL-kileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~ 260 (424)
T Consensus 230 ---E~~t~W~rd~vl~~IL~~Rm~------------~~lPTffTSN~------~~~eLe~~l~ 271 (306)
T PRK08939 230 ---EQMSSWVRDEVLGVILQYRMQ------------EELPTFFTSNF------DFDELEHHLA 271 (306)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHH------------CCCCEEEECCC------CHHHHHHHHH
T ss_conf ---426777899899999999997------------49997997799------9999999986