HHsearch alignment for GI: 254780271 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=99.72 E-value=9.9e-16 Score=130.70 Aligned_cols=268 Identities=20% Similarity=0.290 Sum_probs=185.7
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 9878999997420308599999999--99986588752121013552256835884073321769999999871853131
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLA--VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavA--vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
T Consensus 311 ~dl~~A~~iLd~dHyGL~~vKeRile~lAv~~~-------~~~~k----g~IlclvGpPGvGKTSl~~sIA~al~r~f~r 379 (784)
T PRK10787 311 KDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-------VNKIK----GPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------CCCCC----CCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 699999998765430657799999999999986-------24677----8779964699877246999999985898699
Q ss_pred HHHHHHH-HH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0122111-11-------103556330357788765422776542233322333200233333344321025689887531
Q gi|254780271|r 144 ADATTLT-EA-------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI 215 (424)
Q Consensus 144 vdaT~~T-E~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLki 215 (424)
T Consensus 380 islGGv~DeaeirGHrrTYvgampGrii~~l~~a~~------~nPv~llDEiDK~~~~~-----~Gdp~-----salLEv 443 (784)
T PRK10787 380 MALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV------KNPLFLLDEIDKMSSDM-----RGDPA-----SALLEV 443 (784)
T ss_pred EECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCC------CCCEEEEHHHHHHCCCC-----CCCHH-----HHHHHH
T ss_conf 806887888882564334344368389999997489------88566500355522455-----89988-----999984
Q ss_pred CCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 05870102565564322243024310001232200046789887641234333211110000000168999641056777
Q gi|254780271|r 216 MEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLV 295 (424)
Q Consensus 216 leg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~ 295 (424)
T Consensus 444 LDpeQN~------~F~Dhyl~~~~DlS~v~Fi~TaN~~--~--------------------------------------- 476 (784)
T PRK10787 444 LDPEQNV------AFSDHYLEVDYDLSDVMFVATSNSM--N--------------------------------------- 476 (784)
T ss_pred CCHHHCC------CCCCCEEECCCCHHHEEEEEECCCC--C---------------------------------------
T ss_conf 5976556------4000322046452225899732767--7---------------------------------------
Q ss_pred HHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 52206898720784267211105789999874267799999999874498999968999999995510678742368999
Q gi|254780271|r 296 KFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSIL 375 (424)
Q Consensus 296 ~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIi 375 (424)
T Consensus 477 ---ip~pLlDRmE-~i~~~gYt~~eK~~Ia~---~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~-~ytrEaGvR~ler~i 548 (784)
T PRK10787 477 ---IPAPLLDRME-VIRLSGYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREI 548 (784)
T ss_pred ---CCHHHHHHEE-EEEECCCCHHHHHHHHH---HHCHHHHHHHHCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCHHHHH
T ss_conf ---8767763121-55411676788999999---745399999828996567439999999875-336544425168899
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCEEEEECCC
Q ss_conf 9996777402767898419998377855878816872565
Q gi|254780271|r 376 EKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDR 415 (424)
Q Consensus 376 E~iLedimFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~ 415 (424)
T Consensus 549 ~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~~~~~ 588 (784)
T PRK10787 549 SKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGR 588 (784)
T ss_pred HHHHHHHHHHHHCCCCCCCEEECHHHHHHHHCCCCCCHHH
T ss_conf 9999999999970788785588899999982998788124