HHsearch alignment for GI: 254780271 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=100.00 E-value=0 Score=346.20 Aligned_cols=295 Identities=23% Similarity=0.344 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHH
Q ss_conf 78999997420308599999999999865887521210135522568358840733217699999998718531310122
Q gi|254780271|r 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADAT 147 (424)
Q Consensus 68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT 147 (424)
T Consensus 449 l~~le~~l~~~viGQ~~Ai~~v~~ai~~~raGL~----~~~rPi--gsFlf~GPTGVGKTElak~LA~~L~~~lir~DMS 522 (758)
T PRK11034 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLG----HEHKPV--GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS 522 (758)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC----CCCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9989999877874549999999999999863888----999970--5899978998777999999999986677214266
Q ss_pred HHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 11111-----------1035563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 148 TLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 148 ~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
T Consensus 523 Ey~e~hsvsrLiGaPPGYVGy~eGG~L-------te~Vr~~PysVvL~DEIEKAhpd--------------V~nilLQvl 581 (758)
T PRK11034 523 EYMERHTVSRLIGAPPGYVGFDQGGLL-------TDAVIKHPHAVLLLDEIEKAHPD--------------VFNLLLQVM 581 (758)
T ss_pred HHCCHHHHHHHCCCCCCCCCCCCCCCC-------CHHHHHCCCEEEEEHHHHHHCHH--------------HHHHHHHHC
T ss_conf 531201477744899866676777701-------28787398779973367563989--------------999887323
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 58701025655643222430243100012322000467898876412343332111100000001689996410567775
Q gi|254780271|r 217 EGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVK 296 (424)
Q Consensus 217 eg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~ 296 (424)
T Consensus 582 D~G--~LtD~~Gr~vdF~NtiIImTSN~-----Ga~~---------~~~~~~gf~~~~~~~------~~~------~~l~ 633 (758)
T PRK11034 582 DNG--TLTDNNGRKADFRNVVLVMTTNA-----GVRE---------TERKSIGLIHQDNST------DAM------EEIK 633 (758)
T ss_pred CCC--CCCCCCCCEEECEEEEEEEECCC-----CHHH---------HHHHCCCCCCCCCHH------HHH------HHHH
T ss_conf 778--30179999884400199982561-----7487---------864214755420359------999------9999
Q ss_pred HCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 22068987207842672111057899998742677999999998744989999689999999955106787423689999
Q gi|254780271|r 297 FGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILE 376 (424)
Q Consensus 297 ~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE 376 (424)
T Consensus 634 ~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~----~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~ 709 (758)
T PRK11034 634 KIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HHCCHHHHHHCCEEEEECCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 547986772367478638899999999999----9999999999978985998899999999848894537112889999
Q ss_pred HHHHHHHHCCCC---CCCCCEEEECHHHHCCCCCEEEEECCCCHHHHHHC
Q ss_conf 996777402767---89841999837785587881687256511455531
Q gi|254780271|r 377 KILLDTMFELPM---LKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS 423 (424)
Q Consensus 377 ~iLedimFe~P~---~~~~~~v~Id~~~V~~~~~p~~~~~~~~~~~~~~s 423 (424)
T Consensus 710 ~~i~~~La~~il~g~~~~g~~v~v~~~--~~~~~l~f~~~~~~~~~~~~~ 757 (758)
T PRK11034 710 DNLKKPLANELLFGSLVDGGQVTVALD--KEKNELTYGFQSAQKHKAEAA 757 (758)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEE--CCCCEEEEEEECCCCCCHHHC
T ss_conf 998899999997298889898999997--899879999605775202214